Difference between revisions of "NONHSAT004769"
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sequence = <dnaseq>AAAAATGCTCCGGCTTCTGCCTCGGCTCTGGCAAATGCCGTTCCCGGCTCGGCTCTGGCAGCCCCAGCTCGGCACTTGGCAGCTCTGTCCCTAAGGCGACGCACCTGGGCTGCTCTGCTGGCAGCCCCTGGTTCCTGCTTCACCGTCGCGTGGAGGCCTGGGGCACTGCTTTCTGCTACACCTCTCCTAGGAGCGCGAAACAGATGGAGTGACACTCGTCGAGGGCCTCTGCGGGACTGTCTGTTTGCAGAGGGTGCCAAGGTGTCCACTGCGTAAGGAAGGGCAAAGCCCTTTGGGGCAAAGAACCCTGAGAGGAACGGGGAGATGGATTTTGAAAGCAAACGAACCCTCTCCTAAAAGTGACTGTCACTGACCTGAAAACAACCAGATTAGCTATGGCAAAGGCTGCCAACCAACCAGTGGTCTGCAAGAAGGCTTGTTCTTCCACTTCACCCACCCTGACTGAGATCTTGAGACTGAAGGAAACCCAAAGCCGTACCACCAATGGGCCTAGTGTCATCAACCGGGAGAGGAAAAAGAAAACTGGGCCCAGAGGATTGCAGAGTTATGAGGGACCAACCCCTTCCTGGCTGCATGGATCACAGCATTACCTTTTAAAAGTGTTCCAGTAGCTGTGTTGGAAACCCTCTAACCACGGCAGCCCATTCAGGTGATGAACAGGCTGAAATCAGTACTTCAGGTTCAGCTGGATTATCAAATAAGCGAATAGGATTATCTCTTTTTGTTAACTCAGGGCTGCTATAAATTAAGCCTATGTCTCTTTATATTGCAAATGATTAAAACCATGTCCAAGAGAGACATACTTAGAAAAAAAGTGATATTGAAGAAAAATAAGTAACTGTATTAGAGTAGAATAACTGGTTTTAAAATTTTCTGCAATACAGTCTTGAGAAAATTCCTGGATGGTAAAATACATATTAGATCTTAATACATGCCCAGTTTTTTTTGAAACCAAAATGTGCCTGTTAGATGATGATAACAGCATGCCTCGTTTTATTGTGATTTGCTTTATTGCTCTTCACAGACATTGCTTTTGTTTTTTTGTTTTTTTTTTACAAATTGAAGGTTTGTGGCAACCTTGCCTCAAGCACATCTATTGGTGCCATTTTTCCAACAGCATGTGCTCACTTTGTGTCTCTGTGTCACATAATATTCAATAATTTTTGCAATATTTAAATTTGTTCATCATTATTATATCTGGTATAGTGCTTTGTGATCAATGATCTTTGATGTTACTATGGTAATTGTTTTGGGGTGCTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCAACTTGAACTGTATCTCCCAGAATTCCCACGTGTTGAGGGAGAGACCTAGGGGGAGATAATTGAATCATGGGGGCCAGTCTTTCCTGTGCTATTCTCATGATAGTGAATAAGTCTCATGAAGTCCGATGGGTTTATCTGGGGTTTCTGATTTTGCTTCTTCCTCATTTTTCTCTTGCTGCAGCCATGTAAGCAAGTACCTTTCACCTCCCGCCATGATTCTGAGGCCTCCCCCGCCATGTGGAACTGTAGGTCCAATTAAACTTCTTTTTCTTCCCAGTCTCGGGTATGTCTTTATCAGCACCATGAAAATGGACTAATACAGGTGCCATGTACTGCACTCATATAGAAAGGCAAACTTAATTAATAAATGTTATGTGTGTTCTGACTACTCC</dnaseq>| | sequence = <dnaseq>AAAAATGCTCCGGCTTCTGCCTCGGCTCTGGCAAATGCCGTTCCCGGCTCGGCTCTGGCAGCCCCAGCTCGGCACTTGGCAGCTCTGTCCCTAAGGCGACGCACCTGGGCTGCTCTGCTGGCAGCCCCTGGTTCCTGCTTCACCGTCGCGTGGAGGCCTGGGGCACTGCTTTCTGCTACACCTCTCCTAGGAGCGCGAAACAGATGGAGTGACACTCGTCGAGGGCCTCTGCGGGACTGTCTGTTTGCAGAGGGTGCCAAGGTGTCCACTGCGTAAGGAAGGGCAAAGCCCTTTGGGGCAAAGAACCCTGAGAGGAACGGGGAGATGGATTTTGAAAGCAAACGAACCCTCTCCTAAAAGTGACTGTCACTGACCTGAAAACAACCAGATTAGCTATGGCAAAGGCTGCCAACCAACCAGTGGTCTGCAAGAAGGCTTGTTCTTCCACTTCACCCACCCTGACTGAGATCTTGAGACTGAAGGAAACCCAAAGCCGTACCACCAATGGGCCTAGTGTCATCAACCGGGAGAGGAAAAAGAAAACTGGGCCCAGAGGATTGCAGAGTTATGAGGGACCAACCCCTTCCTGGCTGCATGGATCACAGCATTACCTTTTAAAAGTGTTCCAGTAGCTGTGTTGGAAACCCTCTAACCACGGCAGCCCATTCAGGTGATGAACAGGCTGAAATCAGTACTTCAGGTTCAGCTGGATTATCAAATAAGCGAATAGGATTATCTCTTTTTGTTAACTCAGGGCTGCTATAAATTAAGCCTATGTCTCTTTATATTGCAAATGATTAAAACCATGTCCAAGAGAGACATACTTAGAAAAAAAGTGATATTGAAGAAAAATAAGTAACTGTATTAGAGTAGAATAACTGGTTTTAAAATTTTCTGCAATACAGTCTTGAGAAAATTCCTGGATGGTAAAATACATATTAGATCTTAATACATGCCCAGTTTTTTTTGAAACCAAAATGTGCCTGTTAGATGATGATAACAGCATGCCTCGTTTTATTGTGATTTGCTTTATTGCTCTTCACAGACATTGCTTTTGTTTTTTTGTTTTTTTTTTACAAATTGAAGGTTTGTGGCAACCTTGCCTCAAGCACATCTATTGGTGCCATTTTTCCAACAGCATGTGCTCACTTTGTGTCTCTGTGTCACATAATATTCAATAATTTTTGCAATATTTAAATTTGTTCATCATTATTATATCTGGTATAGTGCTTTGTGATCAATGATCTTTGATGTTACTATGGTAATTGTTTTGGGGTGCTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCAACTTGAACTGTATCTCCCAGAATTCCCACGTGTTGAGGGAGAGACCTAGGGGGAGATAATTGAATCATGGGGGCCAGTCTTTCCTGTGCTATTCTCATGATAGTGAATAAGTCTCATGAAGTCCGATGGGTTTATCTGGGGTTTCTGATTTTGCTTCTTCCTCATTTTTCTCTTGCTGCAGCCATGTAAGCAAGTACCTTTCACCTCCCGCCATGATTCTGAGGCCTCCCCCGCCATGTGGAACTGTAGGTCCAATTAAACTTCTTTTTCTTCCCAGTCTCGGGTATGTCTTTATCAGCACCATGAAAATGGACTAATACAGGTGCCATGTACTGCACTCATATAGAAAGGCAAACTTAATTAATAAATGTTATGTGTGTTCTGACTACTCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG002202]] | + | [[Category:Intergenic]][[Category:NONHSAG002202]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:33, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004769 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1706 nt |
Genomic location |
chr1-:100433823..100435528 |
Exon number |
1 |
Exons |
100433823..100435528 |
Genome context |
|
Sequence |
000001 AAAAATGCTC CGGCTTCTGC CTCGGCTCTG GCAAATGCCG TTCCCGGCTC GGCTCTGGCA GCCCCAGCTC GGCACTTGGC 000080
000081 AGCTCTGTCC CTAAGGCGAC GCACCTGGGC TGCTCTGCTG GCAGCCCCTG GTTCCTGCTT CACCGTCGCG TGGAGGCCTG 000160 000161 GGGCACTGCT TTCTGCTACA CCTCTCCTAG GAGCGCGAAA CAGATGGAGT GACACTCGTC GAGGGCCTCT GCGGGACTGT 000240 000241 CTGTTTGCAG AGGGTGCCAA GGTGTCCACT GCGTAAGGAA GGGCAAAGCC CTTTGGGGCA AAGAACCCTG AGAGGAACGG 000320 000321 GGAGATGGAT TTTGAAAGCA AACGAACCCT CTCCTAAAAG TGACTGTCAC TGACCTGAAA ACAACCAGAT TAGCTATGGC 000400 000401 AAAGGCTGCC AACCAACCAG TGGTCTGCAA GAAGGCTTGT TCTTCCACTT CACCCACCCT GACTGAGATC TTGAGACTGA 000480 000481 AGGAAACCCA AAGCCGTACC ACCAATGGGC CTAGTGTCAT CAACCGGGAG AGGAAAAAGA AAACTGGGCC CAGAGGATTG 000560 000561 CAGAGTTATG AGGGACCAAC CCCTTCCTGG CTGCATGGAT CACAGCATTA CCTTTTAAAA GTGTTCCAGT AGCTGTGTTG 000640 000641 GAAACCCTCT AACCACGGCA GCCCATTCAG GTGATGAACA GGCTGAAATC AGTACTTCAG GTTCAGCTGG ATTATCAAAT 000720 000721 AAGCGAATAG GATTATCTCT TTTTGTTAAC TCAGGGCTGC TATAAATTAA GCCTATGTCT CTTTATATTG CAAATGATTA 000800 000801 AAACCATGTC CAAGAGAGAC ATACTTAGAA AAAAAGTGAT ATTGAAGAAA AATAAGTAAC TGTATTAGAG TAGAATAACT 000880 000881 GGTTTTAAAA TTTTCTGCAA TACAGTCTTG AGAAAATTCC TGGATGGTAA AATACATATT AGATCTTAAT ACATGCCCAG 000960 000961 TTTTTTTTGA AACCAAAATG TGCCTGTTAG ATGATGATAA CAGCATGCCT CGTTTTATTG TGATTTGCTT TATTGCTCTT 001040 001041 CACAGACATT GCTTTTGTTT TTTTGTTTTT TTTTTACAAA TTGAAGGTTT GTGGCAACCT TGCCTCAAGC ACATCTATTG 001120 001121 GTGCCATTTT TCCAACAGCA TGTGCTCACT TTGTGTCTCT GTGTCACATA ATATTCAATA ATTTTTGCAA TATTTAAATT 001200 001201 TGTTCATCAT TATTATATCT GGTATAGTGC TTTGTGATCA ATGATCTTTG ATGTTACTAT GGTAATTGTT TTGGGGTGCT 001280 001281 GATATGGTTT GGCTGTGTCC CCACCCAAAT CTCAACTTGA ACTGTATCTC CCAGAATTCC CACGTGTTGA GGGAGAGACC 001360 001361 TAGGGGGAGA TAATTGAATC ATGGGGGCCA GTCTTTCCTG TGCTATTCTC ATGATAGTGA ATAAGTCTCA TGAAGTCCGA 001440 001441 TGGGTTTATC TGGGGTTTCT GATTTTGCTT CTTCCTCATT TTTCTCTTGC TGCAGCCATG TAAGCAAGTA CCTTTCACCT 001520 001521 CCCGCCATGA TTCTGAGGCC TCCCCCGCCA TGTGGAACTG TAGGTCCAAT TAAACTTCTT TTTCTTCCCA GTCTCGGGTA 001600 001601 TGTCTTTATC AGCACCATGA AAATGGACTA ATACAGGTGC CATGTACTGC ACTCATATAG AAAGGCAAAC TTAATTAATA 001680 001681 AATGTTATGT GTGTTCTGAC TACTCC |
Predicted Small Protein
Name | NONHSAT004769_smProtein_923:1180 |
Length | 86 |
Molecular weight | 10133.004 |
Aromaticity | 0.164705882353 |
Instability index | 55.0623529412 |
Isoelectric point | 6.47064208984 |
Runs | 14 |
Runs residual | 0.0281639928699 |
Runs probability | 0.0791821232997 |
Amino acid sequence | MVKYILDLNTCPVFFETKMCLLDDDNSMPRFIVICFIALHRHCFCFFVFFLQIEGLWQPC LKHIYWCHFSNSMCSLCVSVSHNIQ |
Secondary structure | LEEEEELLLLLLLEEEEEEEELLLLLLLLLEEEEEEELLLLLLEEEEEEEHHHHHHHHHH HHLEEEEEELLLLEEEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHH HHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTT TTTTTTTTTTTTTTTTiiiiiiiii |