Difference between revisions of "NONHSAT004769"

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sequence = <dnaseq>AAAAATGCTCCGGCTTCTGCCTCGGCTCTGGCAAATGCCGTTCCCGGCTCGGCTCTGGCAGCCCCAGCTCGGCACTTGGCAGCTCTGTCCCTAAGGCGACGCACCTGGGCTGCTCTGCTGGCAGCCCCTGGTTCCTGCTTCACCGTCGCGTGGAGGCCTGGGGCACTGCTTTCTGCTACACCTCTCCTAGGAGCGCGAAACAGATGGAGTGACACTCGTCGAGGGCCTCTGCGGGACTGTCTGTTTGCAGAGGGTGCCAAGGTGTCCACTGCGTAAGGAAGGGCAAAGCCCTTTGGGGCAAAGAACCCTGAGAGGAACGGGGAGATGGATTTTGAAAGCAAACGAACCCTCTCCTAAAAGTGACTGTCACTGACCTGAAAACAACCAGATTAGCTATGGCAAAGGCTGCCAACCAACCAGTGGTCTGCAAGAAGGCTTGTTCTTCCACTTCACCCACCCTGACTGAGATCTTGAGACTGAAGGAAACCCAAAGCCGTACCACCAATGGGCCTAGTGTCATCAACCGGGAGAGGAAAAAGAAAACTGGGCCCAGAGGATTGCAGAGTTATGAGGGACCAACCCCTTCCTGGCTGCATGGATCACAGCATTACCTTTTAAAAGTGTTCCAGTAGCTGTGTTGGAAACCCTCTAACCACGGCAGCCCATTCAGGTGATGAACAGGCTGAAATCAGTACTTCAGGTTCAGCTGGATTATCAAATAAGCGAATAGGATTATCTCTTTTTGTTAACTCAGGGCTGCTATAAATTAAGCCTATGTCTCTTTATATTGCAAATGATTAAAACCATGTCCAAGAGAGACATACTTAGAAAAAAAGTGATATTGAAGAAAAATAAGTAACTGTATTAGAGTAGAATAACTGGTTTTAAAATTTTCTGCAATACAGTCTTGAGAAAATTCCTGGATGGTAAAATACATATTAGATCTTAATACATGCCCAGTTTTTTTTGAAACCAAAATGTGCCTGTTAGATGATGATAACAGCATGCCTCGTTTTATTGTGATTTGCTTTATTGCTCTTCACAGACATTGCTTTTGTTTTTTTGTTTTTTTTTTACAAATTGAAGGTTTGTGGCAACCTTGCCTCAAGCACATCTATTGGTGCCATTTTTCCAACAGCATGTGCTCACTTTGTGTCTCTGTGTCACATAATATTCAATAATTTTTGCAATATTTAAATTTGTTCATCATTATTATATCTGGTATAGTGCTTTGTGATCAATGATCTTTGATGTTACTATGGTAATTGTTTTGGGGTGCTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCAACTTGAACTGTATCTCCCAGAATTCCCACGTGTTGAGGGAGAGACCTAGGGGGAGATAATTGAATCATGGGGGCCAGTCTTTCCTGTGCTATTCTCATGATAGTGAATAAGTCTCATGAAGTCCGATGGGTTTATCTGGGGTTTCTGATTTTGCTTCTTCCTCATTTTTCTCTTGCTGCAGCCATGTAAGCAAGTACCTTTCACCTCCCGCCATGATTCTGAGGCCTCCCCCGCCATGTGGAACTGTAGGTCCAATTAAACTTCTTTTTCTTCCCAGTCTCGGGTATGTCTTTATCAGCACCATGAAAATGGACTAATACAGGTGCCATGTACTGCACTCATATAGAAAGGCAAACTTAATTAATAAATGTTATGTGTGTTCTGACTACTCC</dnaseq>|
 
sequence = <dnaseq>AAAAATGCTCCGGCTTCTGCCTCGGCTCTGGCAAATGCCGTTCCCGGCTCGGCTCTGGCAGCCCCAGCTCGGCACTTGGCAGCTCTGTCCCTAAGGCGACGCACCTGGGCTGCTCTGCTGGCAGCCCCTGGTTCCTGCTTCACCGTCGCGTGGAGGCCTGGGGCACTGCTTTCTGCTACACCTCTCCTAGGAGCGCGAAACAGATGGAGTGACACTCGTCGAGGGCCTCTGCGGGACTGTCTGTTTGCAGAGGGTGCCAAGGTGTCCACTGCGTAAGGAAGGGCAAAGCCCTTTGGGGCAAAGAACCCTGAGAGGAACGGGGAGATGGATTTTGAAAGCAAACGAACCCTCTCCTAAAAGTGACTGTCACTGACCTGAAAACAACCAGATTAGCTATGGCAAAGGCTGCCAACCAACCAGTGGTCTGCAAGAAGGCTTGTTCTTCCACTTCACCCACCCTGACTGAGATCTTGAGACTGAAGGAAACCCAAAGCCGTACCACCAATGGGCCTAGTGTCATCAACCGGGAGAGGAAAAAGAAAACTGGGCCCAGAGGATTGCAGAGTTATGAGGGACCAACCCCTTCCTGGCTGCATGGATCACAGCATTACCTTTTAAAAGTGTTCCAGTAGCTGTGTTGGAAACCCTCTAACCACGGCAGCCCATTCAGGTGATGAACAGGCTGAAATCAGTACTTCAGGTTCAGCTGGATTATCAAATAAGCGAATAGGATTATCTCTTTTTGTTAACTCAGGGCTGCTATAAATTAAGCCTATGTCTCTTTATATTGCAAATGATTAAAACCATGTCCAAGAGAGACATACTTAGAAAAAAAGTGATATTGAAGAAAAATAAGTAACTGTATTAGAGTAGAATAACTGGTTTTAAAATTTTCTGCAATACAGTCTTGAGAAAATTCCTGGATGGTAAAATACATATTAGATCTTAATACATGCCCAGTTTTTTTTGAAACCAAAATGTGCCTGTTAGATGATGATAACAGCATGCCTCGTTTTATTGTGATTTGCTTTATTGCTCTTCACAGACATTGCTTTTGTTTTTTTGTTTTTTTTTTACAAATTGAAGGTTTGTGGCAACCTTGCCTCAAGCACATCTATTGGTGCCATTTTTCCAACAGCATGTGCTCACTTTGTGTCTCTGTGTCACATAATATTCAATAATTTTTGCAATATTTAAATTTGTTCATCATTATTATATCTGGTATAGTGCTTTGTGATCAATGATCTTTGATGTTACTATGGTAATTGTTTTGGGGTGCTGATATGGTTTGGCTGTGTCCCCACCCAAATCTCAACTTGAACTGTATCTCCCAGAATTCCCACGTGTTGAGGGAGAGACCTAGGGGGAGATAATTGAATCATGGGGGCCAGTCTTTCCTGTGCTATTCTCATGATAGTGAATAAGTCTCATGAAGTCCGATGGGTTTATCTGGGGTTTCTGATTTTGCTTCTTCCTCATTTTTCTCTTGCTGCAGCCATGTAAGCAAGTACCTTTCACCTCCCGCCATGATTCTGAGGCCTCCCCCGCCATGTGGAACTGTAGGTCCAATTAAACTTCTTTTTCTTCCCAGTCTCGGGTATGTCTTTATCAGCACCATGAAAATGGACTAATACAGGTGCCATGTACTGCACTCATATAGAAAGGCAAACTTAATTAATAAATGTTATGTGTGTTCTGACTACTCC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG002202]]
+
[[Category:Intergenic]][[Category:NONHSAG002202]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:33, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004769

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1706 nt

Genomic location

chr1-:100433823..100435528

Exon number

1

Exons

100433823..100435528

Genome context

Sequence
000001 AAAAATGCTC CGGCTTCTGC CTCGGCTCTG GCAAATGCCG TTCCCGGCTC GGCTCTGGCA GCCCCAGCTC GGCACTTGGC 000080
000081 AGCTCTGTCC CTAAGGCGAC GCACCTGGGC TGCTCTGCTG GCAGCCCCTG GTTCCTGCTT CACCGTCGCG TGGAGGCCTG 000160
000161 GGGCACTGCT TTCTGCTACA CCTCTCCTAG GAGCGCGAAA CAGATGGAGT GACACTCGTC GAGGGCCTCT GCGGGACTGT 000240
000241 CTGTTTGCAG AGGGTGCCAA GGTGTCCACT GCGTAAGGAA GGGCAAAGCC CTTTGGGGCA AAGAACCCTG AGAGGAACGG 000320
000321 GGAGATGGAT TTTGAAAGCA AACGAACCCT CTCCTAAAAG TGACTGTCAC TGACCTGAAA ACAACCAGAT TAGCTATGGC 000400
000401 AAAGGCTGCC AACCAACCAG TGGTCTGCAA GAAGGCTTGT TCTTCCACTT CACCCACCCT GACTGAGATC TTGAGACTGA 000480
000481 AGGAAACCCA AAGCCGTACC ACCAATGGGC CTAGTGTCAT CAACCGGGAG AGGAAAAAGA AAACTGGGCC CAGAGGATTG 000560
000561 CAGAGTTATG AGGGACCAAC CCCTTCCTGG CTGCATGGAT CACAGCATTA CCTTTTAAAA GTGTTCCAGT AGCTGTGTTG 000640
000641 GAAACCCTCT AACCACGGCA GCCCATTCAG GTGATGAACA GGCTGAAATC AGTACTTCAG GTTCAGCTGG ATTATCAAAT 000720
000721 AAGCGAATAG GATTATCTCT TTTTGTTAAC TCAGGGCTGC TATAAATTAA GCCTATGTCT CTTTATATTG CAAATGATTA 000800
000801 AAACCATGTC CAAGAGAGAC ATACTTAGAA AAAAAGTGAT ATTGAAGAAA AATAAGTAAC TGTATTAGAG TAGAATAACT 000880
000881 GGTTTTAAAA TTTTCTGCAA TACAGTCTTG AGAAAATTCC TGGATGGTAA AATACATATT AGATCTTAAT ACATGCCCAG 000960
000961 TTTTTTTTGA AACCAAAATG TGCCTGTTAG ATGATGATAA CAGCATGCCT CGTTTTATTG TGATTTGCTT TATTGCTCTT 001040
001041 CACAGACATT GCTTTTGTTT TTTTGTTTTT TTTTTACAAA TTGAAGGTTT GTGGCAACCT TGCCTCAAGC ACATCTATTG 001120
001121 GTGCCATTTT TCCAACAGCA TGTGCTCACT TTGTGTCTCT GTGTCACATA ATATTCAATA ATTTTTGCAA TATTTAAATT 001200
001201 TGTTCATCAT TATTATATCT GGTATAGTGC TTTGTGATCA ATGATCTTTG ATGTTACTAT GGTAATTGTT TTGGGGTGCT 001280
001281 GATATGGTTT GGCTGTGTCC CCACCCAAAT CTCAACTTGA ACTGTATCTC CCAGAATTCC CACGTGTTGA GGGAGAGACC 001360
001361 TAGGGGGAGA TAATTGAATC ATGGGGGCCA GTCTTTCCTG TGCTATTCTC ATGATAGTGA ATAAGTCTCA TGAAGTCCGA 001440
001441 TGGGTTTATC TGGGGTTTCT GATTTTGCTT CTTCCTCATT TTTCTCTTGC TGCAGCCATG TAAGCAAGTA CCTTTCACCT 001520
001521 CCCGCCATGA TTCTGAGGCC TCCCCCGCCA TGTGGAACTG TAGGTCCAAT TAAACTTCTT TTTCTTCCCA GTCTCGGGTA 001600
001601 TGTCTTTATC AGCACCATGA AAATGGACTA ATACAGGTGC CATGTACTGC ACTCATATAG AAAGGCAAAC TTAATTAATA 001680
001681 AATGTTATGT GTGTTCTGAC TACTCC
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Predicted Small Protein

Name NONHSAT004769_smProtein_923:1180
Length 86
Molecular weight 10133.004
Aromaticity 0.164705882353
Instability index 55.0623529412
Isoelectric point 6.47064208984
Runs 14
Runs residual 0.0281639928699
Runs probability 0.0791821232997
Amino acid sequence MVKYILDLNTCPVFFETKMCLLDDDNSMPRFIVICFIALHRHCFCFFVFFLQIEGLWQPC
LKHIYWCHFSNSMCSLCVSVSHNIQ
Secondary structure LEEEEELLLLLLLEEEEEEEELLLLLLLLLEEEEEEELLLLLLEEEEEEEHHHHHHHHHH
HHLEEEEEELLLLEEEEEEEEEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHH
HHHHHHHHHHHHHHHHLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTT
TTTTTTTTTTTTTTTTiiiiiiiii