Difference between revisions of "NONHSAT080236"

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sequence = <dnaseq>GAACTCGGTGGTCCTGGAAGCTCCGCAGGATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGACAGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGGTGAATATGGACACTGTCATCCCCATCATCTGCCATCCCGTGTCTGTGTGCTCGGTCTGTGTGTTTAACCCTGTCACTCCTCTTGACTGTCAAGTCTTCCTCCCATTTGGTTTTCATATCAAACACTGAGGGAACATGATCAGTTTATAACATCATTAACAGGAAACTCTCTTCTTTATAAAATCATGGTGCTTAGCAAGTTCTGAAGAGCTGTTGATGTAATATCTTGGCCTTTGAAAGAAGGATTAAAAAAAT</dnaseq>|
 
sequence = <dnaseq>GAACTCGGTGGTCCTGGAAGCTCCGCAGGATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGACAGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGGTGAATATGGACACTGTCATCCCCATCATCTGCCATCCCGTGTCTGTGTGCTCGGTCTGTGTGTTTAACCCTGTCACTCCTCTTGACTGTCAAGTCTTCCTCCCATTTGGTTTTCATATCAAACACTGAGGGAACATGATCAGTTTATAACATCATTAACAGGAAACTCTCTTCTTTATAAAATCATGGTGCTTAGCAAGTTCTGAAGAGCTGTTGATGTAATATCTTGGCCTTTGAAAGAAGGATTAAAAAAAT</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG031989]]
+
[[Category:Intergenic]][[Category:NONHSAG031989]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 00:01, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT080236

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

492 nt

Genomic location

chr20+:48429431..48431981

Exon number

2

Exons

48429431..48429485,48431545..48431981

Genome context

Sequence
000001 GAACTCGGTG GTCCTGGAAG CTCCGCAGGA TGGGGGAGAA GATGGCGGAA GAGGAGAGGT TCCCCAATAC AACTCATGAG 000080
000081 GGTTTCAATG TCACCCTCCA CACCACCCTG GTTGTCACGA CGAAACTGGT GCTCCCGACC CCTGGCAAGC CCATCCTCCC 000160
000161 CGTGCAGACA GGGGAGCAGG CCCAGCAAGA GGAGCAGTCC AGCGGCATGA CCATTTTCTT CAGCCTCCTT GTCCTAGGTG 000240
000241 AATATGGACA CTGTCATCCC CATCATCTGC CATCCCGTGT CTGTGTGCTC GGTCTGTGTG TTTAACCCTG TCACTCCTCT 000320
000321 TGACTGTCAA GTCTTCCTCC CATTTGGTTT TCATATCAAA CACTGAGGGA ACATGATCAG TTTATAACAT CATTAACAGG 000400
000401 AAACTCTCTT CTTTATAAAA TCATGGTGCT TAGCAAGTTC TGAAGAGCTG TTGATGTAAT ATCTTGGCCT TTGAAAGAAG 000480
000481 GATTAAAAAA AT
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Predicted Small Protein

Name NONHSAT080236_smProtein_29:304
Length 92
Molecular weight 10024.4503
Aromaticity 0.0549450549451
Instability index 48.5373626374
Isoelectric point 5.78643798828
Runs 11
Runs residual 0.0125915750916
Runs probability 0.0491561079796
Amino acid sequence MGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVLPTPGKPILPVQTGEQAQQEEQSSGM
TIFFSLLVLGEYGHCHPHHLPSRVCVLGLCV
Secondary structure LLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELLLLLLEEEELLLHHHHHHHHLLLL
EEEEEEEEELLLLLLLLLLLLLLEEEEEEEL
PRMN -
PiMo -