Difference between revisions of "NONHSAT080236"
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>GAACTCGGTGGTCCTGGAAGCTCCGCAGGATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGACAGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGGTGAATATGGACACTGTCATCCCCATCATCTGCCATCCCGTGTCTGTGTGCTCGGTCTGTGTGTTTAACCCTGTCACTCCTCTTGACTGTCAAGTCTTCCTCCCATTTGGTTTTCATATCAAACACTGAGGGAACATGATCAGTTTATAACATCATTAACAGGAAACTCTCTTCTTTATAAAATCATGGTGCTTAGCAAGTTCTGAAGAGCTGTTGATGTAATATCTTGGCCTTTGAAAGAAGGATTAAAAAAAT</dnaseq>| | sequence = <dnaseq>GAACTCGGTGGTCCTGGAAGCTCCGCAGGATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGACAGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGGTGAATATGGACACTGTCATCCCCATCATCTGCCATCCCGTGTCTGTGTGCTCGGTCTGTGTGTTTAACCCTGTCACTCCTCTTGACTGTCAAGTCTTCCTCCCATTTGGTTTTCATATCAAACACTGAGGGAACATGATCAGTTTATAACATCATTAACAGGAAACTCTCTTCTTTATAAAATCATGGTGCTTAGCAAGTTCTGAAGAGCTGTTGATGTAATATCTTGGCCTTTGAAAGAAGGATTAAAAAAAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG031989]] | + | [[Category:Intergenic]][[Category:NONHSAG031989]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:01, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT080236 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
492 nt |
Genomic location |
chr20+:48429431..48431981 |
Exon number |
2 |
Exons |
48429431..48429485,48431545..48431981 |
Genome context |
|
Sequence |
000001 GAACTCGGTG GTCCTGGAAG CTCCGCAGGA TGGGGGAGAA GATGGCGGAA GAGGAGAGGT TCCCCAATAC AACTCATGAG 000080
000081 GGTTTCAATG TCACCCTCCA CACCACCCTG GTTGTCACGA CGAAACTGGT GCTCCCGACC CCTGGCAAGC CCATCCTCCC 000160 000161 CGTGCAGACA GGGGAGCAGG CCCAGCAAGA GGAGCAGTCC AGCGGCATGA CCATTTTCTT CAGCCTCCTT GTCCTAGGTG 000240 000241 AATATGGACA CTGTCATCCC CATCATCTGC CATCCCGTGT CTGTGTGCTC GGTCTGTGTG TTTAACCCTG TCACTCCTCT 000320 000321 TGACTGTCAA GTCTTCCTCC CATTTGGTTT TCATATCAAA CACTGAGGGA ACATGATCAG TTTATAACAT CATTAACAGG 000400 000401 AAACTCTCTT CTTTATAAAA TCATGGTGCT TAGCAAGTTC TGAAGAGCTG TTGATGTAAT ATCTTGGCCT TTGAAAGAAG 000480 000481 GATTAAAAAA AT |
Predicted Small Protein
Name | NONHSAT080236_smProtein_29:304 |
Length | 92 |
Molecular weight | 10024.4503 |
Aromaticity | 0.0549450549451 |
Instability index | 48.5373626374 |
Isoelectric point | 5.78643798828 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0491561079796 |
Amino acid sequence | MGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVLPTPGKPILPVQTGEQAQQEEQSSGM TIFFSLLVLGEYGHCHPHHLPSRVCVLGLCV |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELLLLLLEEEELLLHHHHHHHHLLLL EEEEEEEEELLLLLLLLLLLLLLEEEEEEEL |
PRMN | - |
PiMo | - |