Difference between revisions of "NONHSAT102247"
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==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/ncR-uPAR/ Annotation originally sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>TCTTTTGAAGGAGAAGAGGTAAAAAATAATCAGTTCAAAAAATTATACTAAAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCATGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCAACCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAGAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGTAGAATGGCGTAAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGATACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAATTATGCTAAAGAGTAAACTCAAAGAAAGTAGAGGAAAAGAATGAATTAAAAATCTGTGTTTATAAATAAAAATAAA</dnaseq>| | sequence = <dnaseq>TCTTTTGAAGGAGAAGAGGTAAAAAATAATCAGTTCAAAAAATTATACTAAAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCATGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCAACCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAGAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGTAGAATGGCGTAAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGATACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAATTATGCTAAAGAGTAAACTCAAAGAAAGTAGAGGAAAAGAATGAATTAAAAATCTGTGTTTATAAATAAAAATAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG040775]] | + | [[Category:Intergenic]][[Category:NONHSAG040775]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 03:26, 26 August 2015
Please input one-sentence summary here.
Contents
Annotated Information
Name
ncR-uPAR: non-protein coding RNA, upstream of F2R/PAR1
Characteristics
~400 bp. RNA polymerase II transcript. Found several kb upstream of the human protease-activated receptor-1 (PAR-1) gene.
Mostly made up of repeat sequences including an Alu element.
Function
ncR-uPAR can act in-trans to stimulate PAR-1 expression.
ncR-uPAR binds nuclear proteins in-vivo, which could provide a mechanism for it to positively regulate the PAR-1 promoter during embryogenesis.
Expression
Expressed during embryonic development.
Presence of the ncR-uPAR promoter sequence drives expression of a transgene during embryonic vascular development at E9, which recapitulates PAR-1 expression at E9 quite well. At E16 expression was seen in brain and in arteries but not veins.
Conservation
Please input conservation information here.
Misc
Refseq ncR-uPAR appears to be the ncR-uPAR promoter and the lncRNA sequence. UCSC genomic co-ordinates are to this Refseq annotation, while the sequence provided is from the identified transcriptional start site to the end of the polyadenylation sites (exact 3' terminus is unknown).
Transcriptomic Nomeclature
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Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
NONHSAT102247 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
432 nt |
| Genomic location |
chr5+:76008228..76008713 |
| Exon number |
1 |
| Exons |
76008228..76008713 |
| Genome context |
|
| Sequence |
000001 TCTTTTGAAG GAGAAGAGGT AAAAAATAAT CAGTTCAAAA AATTATACTA AAGAGGCCGG GCGCGGTGGC TCACGCCTGT 000080
000081 AATCCCAGCA CTTCGGGAGG CCATGGCGGG CGGATCATGA GGTCAGGAGA TCGAGACCAA CCTGGCTAAC ACGGTGAAAC 000160 000161 CCCGTCTCTA CTAAAAATAC AGAAAAATTA GCCGGGCGTG GTGGCAGGCG CCTGTAGTCC CAGCTACTCA GGAGGCTGAG 000240 000241 GCAGTAGAAT GGCGTAAACC CAGGAGGCGG AGGTTGCAGT GAGCCGAGAT CGCGCCACTG CACTCCAGCC TGGGCGATAC 000320 000321 AGCGAGACTC CGTCTCAAAA AAAAAAAAAA AAAAAATTAT GCTAAAGAGT AAACTCAAAG AAAGTAGAGG AAAAGAATGA 000400 000401 ATTAAAAATC TGTGTTTATA AATAAAAATA AA |
