Difference between revisions of "NONHSAT145628"

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sequence = <dnaseq>GGGAACTGCAAGTTCCCACGTCCACCCCCGCCACACCCACAGCCTGCCCTGCATACACCACTGCTGGAGATGTAGCCAGGACAGCTTGCCCTGTCCCCTGACCCCACGGACCTTGTTAACACCGCTGCTCCCCTCGGTGATATTTACCTGTCCGTGGCTGTCCTGACCAATACTCCCAAGGAGACAGTGCATCACTGGGCCAACAGGGCAGAGCCCCAGGGGACCACTCCCTTTACGACATGGACGGACACTTTAGGAGTGACGGTTACCCTCTCCTTGGATGAGGAGGGGCTCCAAGGATGGACATGTCAGTCTCACCTGGAGGGAGAGGGGCAGTGGGTGGGGGCAACGCTCAGTGGCTGGTGGACAGGCAAGGGGTGAGTGAGCCCTGCCCAACTGACTCCATTGGCGGCCACTGGCCTTGCCTGGCATTCACGGAACAGGCGCTTCATAAACTTGTTGCTTCAATGTGAAATCACCTCAATTTTGTAAATGCGTCTGTAGCATCCACAGGACTCATCATCTAGAATTCAAACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>GGGAACTGCAAGTTCCCACGTCCACCCCCGCCACACCCACAGCCTGCCCTGCATACACCACTGCTGGAGATGTAGCCAGGACAGCTTGCCCTGTCCCCTGACCCCACGGACCTTGTTAACACCGCTGCTCCCCTCGGTGATATTTACCTGTCCGTGGCTGTCCTGACCAATACTCCCAAGGAGACAGTGCATCACTGGGCCAACAGGGCAGAGCCCCAGGGGACCACTCCCTTTACGACATGGACGGACACTTTAGGAGTGACGGTTACCCTCTCCTTGGATGAGGAGGGGCTCCAAGGATGGACATGTCAGTCTCACCTGGAGGGAGAGGGGCAGTGGGTGGGGGCAACGCTCAGTGGCTGGTGGACAGGCAAGGGGTGAGTGAGCCCTGCCCAACTGACTCCATTGGCGGCCACTGGCCTTGCCTGGCATTCACGGAACAGGCGCTTCATAAACTTGTTGCTTCAATGTGAAATCACCTCAATTTTGTAAATGCGTCTGTAGCATCCACAGGACTCATCATCTAGAATTCAAACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG020819]]
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[[Category:Intergenic]][[Category:NONHSAG020819]][[Category:Transcripts]]

Latest revision as of 03:18, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT145628

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

580 nt

Genomic location

chr17-:10561859..10562399

Exon number

1

Exons

10561859..10562399

Genome context

Sequence
000001 GGGAACTGCA AGTTCCCACG TCCACCCCCG CCACACCCAC AGCCTGCCCT GCATACACCA CTGCTGGAGA TGTAGCCAGG 000080
000081 ACAGCTTGCC CTGTCCCCTG ACCCCACGGA CCTTGTTAAC ACCGCTGCTC CCCTCGGTGA TATTTACCTG TCCGTGGCTG 000160
000161 TCCTGACCAA TACTCCCAAG GAGACAGTGC ATCACTGGGC CAACAGGGCA GAGCCCCAGG GGACCACTCC CTTTACGACA 000240
000241 TGGACGGACA CTTTAGGAGT GACGGTTACC CTCTCCTTGG ATGAGGAGGG GCTCCAAGGA TGGACATGTC AGTCTCACCT 000320
000321 GGAGGGAGAG GGGCAGTGGG TGGGGGCAAC GCTCAGTGGC TGGTGGACAG GCAAGGGGTG AGTGAGCCCT GCCCAACTGA 000400
000401 CTCCATTGGC GGCCACTGGC CTTGCCTGGC ATTCACGGAA CAGGCGCTTC ATAAACTTGT TGCTTCAATG TGAAATCACC 000480
000481 TCAATTTTGT AAATGCGTCT GTAGCATCCA CAGGACTCAT CATCTAGAAT TCAAACCCTT AAAAAAAAAA AAAAAAAAAA 000560
000561 AAAAAAAAAA AAAAAAAAAA
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Predicted Small Protein

Name NONHSAT145628_smProtein_299:472
Length 58
Molecular weight 5910.6347
Aromaticity 0.0526315789474
Instability index 52.6947368421
Isoelectric point 5.33734130859
Runs 9
Runs residual 0.00394736842105
Runs probability 0.0252507409371
Amino acid sequence MDMSVSPGGRGAVGGGNAQWLVDRQGVSEPCPTDSIGGHWPCLAFTEQALHKLVASM
Secondary structure LLLEELLLLLLEELLLLEEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLL
PRMN -
PiMo -