Difference between revisions of "NONHSAT102562"
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sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>| | sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG040934]] | + | [[Category:Intergenic]][[Category:NONHSAG040934]][[Category:Transcripts]] |
Latest revision as of 01:24, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT102562 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
496 nt |
| Genomic location |
chr5+:85698283..85698778 |
| Exon number |
1 |
| Exons |
85698283..85698778 |
| Genome context |
|
| Sequence |
000001 ATTGGCAGAG CAAAAAGGGA ACCAAGATCT ACCAGTTCAT TGGTAAACAC TACTCTCTAG CTATTGACAA GAAGATGCCC 000080
000081 TGAGATTTTA CGTCAATTTC TTGAAGACAG AGACAGCCAA GTCTCTGCCT GAAATTTAAA AGCTACTTGC GTCTTAGGGa 000160 000161 aaaaaaaaaa aaaaaaaaaa aCCAACTTTG TAGACAAAGC AAGCAAAGAA GAGCCTAAAG CAGCCTCCTC AACATGAAAT 000240 000241 AATATTTTAT AAAAATGTTG TCAATACAGA TGTGGTTTAC AAATATATTT TTGAGGGGTT TACTTTCTAG CTATCTCACC 000320 000321 ATGCAAGAGC AGCATGGTTT CCTTAACTTT GGAACTTGCT TTATGTATCC ACCAATAGGT ATCACCTACT GGCCTATGAG 000400 000401 TGGCATGAGC TAGGGCCTGT GGTAGAACAT ACTCTGGCTA ATGTTTTATA TCATATGAGA ACAAAAGTCA ATGTGAGGTA 000480 000481 GATTCCTCTA TGGAAA |
Predicted Small Protein
| Name | NONHSAT102562_smProtein_254:412 |
| Length | 53 |
| Molecular weight | 6089.1546 |
| Aromaticity | 0.192307692308 |
| Instability index | 43.0365384615 |
| Isoelectric point | 6.49713134766 |
| Runs | 8 |
| Runs residual | 0.00347674923946 |
| Runs probability | 0.0326576576577 |
| Amino acid sequence | MLSIQMWFTNIFLRGLLSSYLTMQEQHGFLNFGTCFMYPPIGITYWPMSGMS |
| Secondary structure | LLLEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEELLLLEEEELLLLLL |
| PRMN | - |
| PiMo | - |
