Difference between revisions of "NONHSAT005924"

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sequence = <dnaseq>AGTACATTTCAAGTTGGTCGCGGCTTGGGCTCCGCTTTGGGGAGGGGCAGCAGGTTTATTCACTGGATCTCTGAATACCCAGGCCCCCTCCACCATGGCCAGCCGGGGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAACGTGGAGGCCGTGGGCATTGGGAAAGGGGATGCTTTGCCCCCACCCACCCTGCAGCCTTCTCCACTCTTCCCTATTGGCGGCGTCTACCCCGGGAGCTAAAGATCCGAGTGCGGAAGCTACAGAAGGAACGGATTACAATTCTGCTCCCCAAGAGGCCCCCTAAGACCACAGAAGATAAGGAGGAAACAATACAGAAACTAGAGGTGAGGAGGAAGTGTGCATAGAGACCTCCTGAGCCCTGGATCCATTCCCTCTCTCTTGGCCCATGTGTGCCTCAATTTTTCCCTTCTGTGAACTGAACCTGAGTTTCTATTCCTATTCATCCCCACATGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCagaggaggatgaggagaaagaagaagaagaagagaaggaagaggaggaagaagaagagtatgatgaagaagaacatgaagaGGAAACTGATTACATCATGTCATATTTTGACAATGGAGAGGACTTTGGTGGTGACAGTGATGACAATATGGACGAGGCTATATACTGAAGAAGGACTCTGGACCCTCGTGTCTTTCTTTAGGATACAGAGAGTAACTGTACCTATTATTTGTTTCTTCAG</dnaseq>|
 
sequence = <dnaseq>AGTACATTTCAAGTTGGTCGCGGCTTGGGCTCCGCTTTGGGGAGGGGCAGCAGGTTTATTCACTGGATCTCTGAATACCCAGGCCCCCTCCACCATGGCCAGCCGGGGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAACGTGGAGGCCGTGGGCATTGGGAAAGGGGATGCTTTGCCCCCACCCACCCTGCAGCCTTCTCCACTCTTCCCTATTGGCGGCGTCTACCCCGGGAGCTAAAGATCCGAGTGCGGAAGCTACAGAAGGAACGGATTACAATTCTGCTCCCCAAGAGGCCCCCTAAGACCACAGAAGATAAGGAGGAAACAATACAGAAACTAGAGGTGAGGAGGAAGTGTGCATAGAGACCTCCTGAGCCCTGGATCCATTCCCTCTCTCTTGGCCCATGTGTGCCTCAATTTTTCCCTTCTGTGAACTGAACCTGAGTTTCTATTCCTATTCATCCCCACATGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCagaggaggatgaggagaaagaagaagaagaagagaaggaagaggaggaagaagaagagtatgatgaagaagaacatgaagaGGAAACTGATTACATCATGTCATATTTTGACAATGGAGAGGACTTTGGTGGTGACAGTGATGACAATATGGACGAGGCTATATACTGAAGAAGGACTCTGGACCCTCGTGTCTTTCTTTAGGATACAGAGAGTAACTGTACCTATTATTTGTTTCTTCAG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG002700]]
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[[Category:Sense]][[Category:NONHSAG002700]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:38, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005924

Source

NONCODE4.0

Same with

,

Classification

sense

Length

755 nt

Genomic location

chr1-:145456565..145470374

Exon number

5

Exons

145456565..145456723,145456991..145457309,145457548..145457604,145460097..145460263,145470322..145470374

Genome context

Sequence
000001 AGTACATTTC AAGTTGGTCG CGGCTTGGGC TCCGCTTTGG GGAGGGGCAG CAGGTTTATT CACTGGATCT CTGAATACCC 000080
000081 AGGCCCCCTC CACCATGGCC AGCCGGGGTG GGGGCCGGGG TCGTGGCCGG GGCCAGTTGA CCTTCAACGT GGAGGCCGTG 000160
000161 GGCATTGGGA AAGGGGATGC TTTGCCCCCA CCCACCCTGC AGCCTTCTCC ACTCTTCCCT ATTGGCGGCG TCTACCCCGG 000240
000241 GAGCTAAAGA TCCGAGTGCG GAAGCTACAG AAGGAACGGA TTACAATTCT GCTCCCCAAG AGGCCCCCTA AGACCACAGA 000320
000321 AGATAAGGAG GAAACAATAC AGAAACTAGA GGTGAGGAGG AAGTGTGCAT AGAGACCTCC TGAGCCCTGG ATCCATTCCC 000400
000401 TCTCTCTTGG CCCATGTGTG CCTCAATTTT TCCCTTCTGT GAACTGAACC TGAGTTTCTA TTCCTATTCA TCCCCACATG 000480
000481 AGACCCTGGA GAAGAAGGAA GAAGAAGTAA CTTCagagga ggatgaggag aaagaagaag aagaagagaa ggaagaggag 000560
000561 gaagaagaag agtatgatga agaagaacat gaagaGGAAA CTGATTACAT CATGTCATAT TTTGACAATG GAGAGGACTT 000640
000641 TGGTGGTGAC AGTGATGACA ATATGGACGA GGCTATATAC TGAAGAAGGA CTCTGGACCC TCGTGTCTTT CTTTAGGATA 000720
000721 CAGAGAGTAA CTGTACCTAT TATTTGTTTC TTCAG
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Predicted Small Protein

Name NONHSAT005924_smProtein_413:682
Length 90
Molecular weight 10656.8263
Aromaticity 0.123595505618
Instability index 104.755168539
Isoelectric point 3.63177490234
Runs 13
Runs residual 0.00286406697511
Runs probability 0.0316742081448
Amino acid sequence MCASIFPFCELNLSFYSYSSPHETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYDEEEHE
EETDYIMSYFDNGEDFGGDSDDNMDEAIY
Secondary structure LEEEEEEEEEELLEEEELLLLLHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLHHHHH
HHHHHHHHHLLLLLLLLLLLLHHHHHHLL
PRMN -
PiMo -