Difference between revisions of "NONHSAT146489"
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sequence = <dnaseq>CGCTGGCCCGCCCCACCCCGTGTGCTCGTCTGGAACCGCCCGTCCTACTTGCTGCCCCATCGCGAGAGTCCTTCCTCTCCAGTTCGGTCCACCACCTGCCCCCATGCTCGATCCTCTGTGGAACCAGGAGCTGTCCCACACCTTATAGAGGCATACCTGGGATGACGGACAATGACTTGCCCGGGATCACTTTGCCAATTGGAAAGGAGGAAAAGTCCCACACCCGTGGCGCTGTCTCCGGAGGGTGCTGCGTCCAAGAGGCCCACCCGCAGGGATGAGCCTGAGTGCGCGAATCCAAGCACGAGAAGGGAGCTGGGAATCTCCCGGTGGCTGGGGACCCCTGCTCCTTCTAGAGCCTCTGCCTCTAGGTCTTTAATAAAGTATATACAATGTGGCGATCACAGGGCACGCCCTAAGAAACCTGCACACTAACCTCCCTCTCAGACACTGCTTCTGGAGAGCCCAACCTGTGACCGCTGGGTCAGGAGGGGTCTGAGGAAGAAGATGCTAAGATGGGATTCTGGCTCTGGATCACCCACTGCCTAGCTGCTGATAAGGATCCTTTTGCTGGGGGTAGATGGAGCGGGTACATGCCCCCGCACAGAGCAGAGGATGCCAAGAAAACACAGTGAGGAAAGGATTATCTCTTCAGTGTTGGGAAAACTGGATATCCACATGCAGAAGAATGAAACTGGAACTTTACCTCACATTATGTACAAAAATCAACTAAAAATAGATTAAAGACAAAAACCTAAGACTGGAGACTACAAAACTATTAGAAGAAGAAAACACAGGGGTAAGCTTCTTGACATTGACCTGGGTAATGATTTTTTTGGACACGACACTAAAAGCACAAGCAAAAAGGCAAAAATAGACAAGTGGACTGCATCAAACTGAAAAGCTTCTGCACAGCAAAG</dnaseq>| | sequence = <dnaseq>CGCTGGCCCGCCCCACCCCGTGTGCTCGTCTGGAACCGCCCGTCCTACTTGCTGCCCCATCGCGAGAGTCCTTCCTCTCCAGTTCGGTCCACCACCTGCCCCCATGCTCGATCCTCTGTGGAACCAGGAGCTGTCCCACACCTTATAGAGGCATACCTGGGATGACGGACAATGACTTGCCCGGGATCACTTTGCCAATTGGAAAGGAGGAAAAGTCCCACACCCGTGGCGCTGTCTCCGGAGGGTGCTGCGTCCAAGAGGCCCACCCGCAGGGATGAGCCTGAGTGCGCGAATCCAAGCACGAGAAGGGAGCTGGGAATCTCCCGGTGGCTGGGGACCCCTGCTCCTTCTAGAGCCTCTGCCTCTAGGTCTTTAATAAAGTATATACAATGTGGCGATCACAGGGCACGCCCTAAGAAACCTGCACACTAACCTCCCTCTCAGACACTGCTTCTGGAGAGCCCAACCTGTGACCGCTGGGTCAGGAGGGGTCTGAGGAAGAAGATGCTAAGATGGGATTCTGGCTCTGGATCACCCACTGCCTAGCTGCTGATAAGGATCCTTTTGCTGGGGGTAGATGGAGCGGGTACATGCCCCCGCACAGAGCAGAGGATGCCAAGAAAACACAGTGAGGAAAGGATTATCTCTTCAGTGTTGGGAAAACTGGATATCCACATGCAGAAGAATGAAACTGGAACTTTACCTCACATTATGTACAAAAATCAACTAAAAATAGATTAAAGACAAAAACCTAAGACTGGAGACTACAAAACTATTAGAAGAAGAAAACACAGGGGTAAGCTTCTTGACATTGACCTGGGTAATGATTTTTTTGGACACGACACTAAAAGCACAAGCAAAAAGGCAAAAATAGACAAGTGGACTGCATCAAACTGAAAAGCTTCTGCACAGCAAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG021116]] | + | [[Category:Intergenic]][[Category:NONHSAG021116]][[Category:Transcripts]] |
Latest revision as of 03:21, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT146489 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
917 nt |
| Genomic location |
chr17-:19383302..19398568 |
| Exon number |
3 |
| Exons |
19383302..19383704,19390159..19390378,19398187..19398568 |
| Genome context |
|
| Sequence |
000001 CGCTGGCCCG CCCCACCCCG TGTGCTCGTC TGGAACCGCC CGTCCTACTT GCTGCCCCAT CGCGAGAGTC CTTCCTCTCC 000080
000081 AGTTCGGTCC ACCACCTGCC CCCATGCTCG ATCCTCTGTG GAACCAGGAG CTGTCCCACA CCTTATAGAG GCATACCTGG 000160 000161 GATGACGGAC AATGACTTGC CCGGGATCAC TTTGCCAATT GGAAAGGAGG AAAAGTCCCA CACCCGTGGC GCTGTCTCCG 000240 000241 GAGGGTGCTG CGTCCAAGAG GCCCACCCGC AGGGATGAGC CTGAGTGCGC GAATCCAAGC ACGAGAAGGG AGCTGGGAAT 000320 000321 CTCCCGGTGG CTGGGGACCC CTGCTCCTTC TAGAGCCTCT GCCTCTAGGT CTTTAATAAA GTATATACAA TGTGGCGATC 000400 000401 ACAGGGCACG CCCTAAGAAA CCTGCACACT AACCTCCCTC TCAGACACTG CTTCTGGAGA GCCCAACCTG TGACCGCTGG 000480 000481 GTCAGGAGGG GTCTGAGGAA GAAGATGCTA AGATGGGATT CTGGCTCTGG ATCACCCACT GCCTAGCTGC TGATAAGGAT 000560 000561 CCTTTTGCTG GGGGTAGATG GAGCGGGTAC ATGCCCCCGC ACAGAGCAGA GGATGCCAAG AAAACACAGT GAGGAAAGGA 000640 000641 TTATCTCTTC AGTGTTGGGA AAACTGGATA TCCACATGCA GAAGAATGAA ACTGGAACTT TACCTCACAT TATGTACAAA 000720 000721 AATCAACTAA AAATAGATTA AAGACAAAAA CCTAAGACTG GAGACTACAA AACTATTAGA AGAAGAAAAC ACAGGGGTAA 000800 000801 GCTTCTTGAC ATTGACCTGG GTAATGATTT TTTTGGACAC GACACTAAAA GCACAAGCAA AAAGGCAAAA ATAGACAAGT 000880 000881 GGACTGCATC AAACTGAAAA GCTTCTGCAC AGCAAAG |
Predicted Small Protein
| Name | NONHSAT146489_smProtein_512:631 |
| Length | 40 |
| Molecular weight | 4477.0712 |
| Aromaticity | 0.153846153846 |
| Instability index | 70.6538461538 |
| Isoelectric point | 7.96063232422 |
| Runs | 6 |
| Runs residual | 0.0148944193062 |
| Runs probability | 0.0208002119767 |
| Amino acid sequence | MGFWLWITHCLAADKDPFAGGRWSGYMPPHRAEDAKKTQ |
| Secondary structure | LLEEHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHHHLLL |
| PRMN | - |
| PiMo | - |
