Difference between revisions of "NONHSAT146529"
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sequence = <dnaseq>TGTTTTCTCAATTCTCCTATAGACAAATATTCATTGTCTTTAAATAAAAATGGACTTCccctttgccctgctactcttttttcccttaccctgatttattttcctttataatgcttattgctacctgacattattatGttttttttttgagaatgggatcttgctatgttgcccaggcaggtctcaaactcctgggctcaagctattctcccgcctctgcctccctaaatgatgggattccaggcatgagctaccacacctggccTTCCATGACATCTTGTTCAACAACTCATGCAAGACCTGAGAGAGTGTTATGCAGGAGGATGGGGTGATATGCCAGTGGGGACTGCTGGCAGACGTGCTTCAAATGAATTCTTGGTGTGTGGAGGGCAGTGTCAGCCTACTGTGTCACCTCACAGCGAAACAGCACCAATTCCAGTTCCTACTCAAATAAGGAATTATCAGCGCATAGAGCAGAATCTTACATCTACTG</dnaseq>| | sequence = <dnaseq>TGTTTTCTCAATTCTCCTATAGACAAATATTCATTGTCTTTAAATAAAAATGGACTTCccctttgccctgctactcttttttcccttaccctgatttattttcctttataatgcttattgctacctgacattattatGttttttttttgagaatgggatcttgctatgttgcccaggcaggtctcaaactcctgggctcaagctattctcccgcctctgcctccctaaatgatgggattccaggcatgagctaccacacctggccTTCCATGACATCTTGTTCAACAACTCATGCAAGACCTGAGAGAGTGTTATGCAGGAGGATGGGGTGATATGCCAGTGGGGACTGCTGGCAGACGTGCTTCAAATGAATTCTTGGTGTGTGGAGGGCAGTGTCAGCCTACTGTGTCACCTCACAGCGAAACAGCACCAATTCCAGTTCCTACTCAAATAAGGAATTATCAGCGCATAGAGCAGAATCTTACATCTACTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG021140]] | + | [[Category:Sense]][[Category:NONHSAG021140]][[Category:Transcripts]] |
Latest revision as of 03:22, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT146529 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
493 nt |
| Genomic location |
chr17-:19708040..19714550 |
| Exon number |
3 |
| Exons |
19708040..19708143,19713691..19713751,19714223..19714550 |
| Genome context |
|
| Sequence |
000001 TGTTTTCTCA ATTCTCCTAT AGACAAATAT TCATTGTCTT TAAATAAAAA TGGACTTCcc ctttgccctg ctactctttt 000080
000081 ttcccttacc ctgatttatt ttcctttata atgcttattg ctacctgaca ttattatGtt ttttttttga gaatgggatc 000160 000161 ttgctatgtt gcccaggcag gtctcaaact cctgggctca agctattctc ccgcctctgc ctccctaaat gatgggattc 000240 000241 caggcatgag ctaccacacc tggccTTCCA TGACATCTTG TTCAACAACT CATGCAAGAC CTGAGAGAGT GTTATGCAGG 000320 000321 AGGATGGGGT GATATGCCAG TGGGGACTGC TGGCAGACGT GCTTCAAATG AATTCTTGGT GTGTGGAGGG CAGTGTCAGC 000400 000401 CTACTGTGTC ACCTCACAGC GAAACAGCAC CAATTCCAGT TCCTACTCAA ATAAGGAATT ATCAGCGCAT AGAGCAGAAT 000480 000481 CTTACATCTA CTG |
Predicted Small Protein
| Name | NONHSAT146529_smProtein_152:331 |
| Length | 60 |
| Molecular weight | 6280.1387 |
| Aromaticity | 0.0677966101695 |
| Instability index | 54.4610169492 |
| Isoelectric point | 9.05633544922 |
| Runs | 8 |
| Runs residual | 0.00886331830197 |
| Runs probability | 0.0144740328564 |
| Amino acid sequence | MGSCYVAQAGLKLLGSSYSPASASLNDGIPGMSYHTWPSMTSCSTTHARPERVLCRRMG |
| Secondary structure | LLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLHHHHEEEELL |
| PRMN | - |
| PiMo | - |
