Difference between revisions of "NONHSAT124761"
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sequence = <dnaseq>ATGGCGACCTTTGTGAGTGAGCTGGAGGTGGCCAAGAAGAACTTCAGTGAGGCCCTGGGGGACAACGTGAATCAATACTGGGCTAACTTAAGCTGTGGTTCAAGCGGAAGATCAGGAAAGAGGACTTTGACCTTGAAACTCATAGGTTTCTTACATAGGATAATATGCATCCTCACAATGATTTCCTCCTGGCCATTCTCACGCATTGTCAGATTTTGGTTTCTACATCAGAGGGTGCTGGATCTTTGCCCTGGATGGGGGGTTCTGCAGCAAAACCTGGAAAGCCCAATGGAAAGAAAAAGCTTTCTTCTGTCAGAAATTTGATCATAGATTTCAGCCTCACAGTCCTTTCTCAAGAGCCCAGTAATTTGTGGCAAAAGATCCCCAAGATGATGATGATTTGAAACTTTGTTCCCACACCATGATGCTTCTCATTCAAGGCTGGCTTGAAGGGAGAATGACAGTGACTGCTTATGAGCATGGGCTGGACAATGTCACCGAGGAGGCTATTTCAGCTCTTGTCTATGCTGTGGAGAATCATCCTAAAGATATACTGACATCAGTTGTGTCAAGAAGGAAAGCTTATCGGTTACGAGATGACCATTTTAAATATGCCTTTGGCAGTAATTTGACCCCACAGCCATACCTGAAGAATAATGTAGTAGCTTAGAACAACTTAATATAAAGCCCTCAAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCGGCTTCTCACCCACCTCCTGATGAAGCCGAGCAGCAGGCTGCATTCCTTCTGGCATGCTCTGGAGACACTCTATCTGCATCTTTATCTGCAGCGAACATGTATGAACTTTTTGAAGCTCTGCGGGTACACAGGGAAGTCATACCTACACATACTGTCTATGCCGTTAACATTGAAAGGATTATCATGAAAGTCTGGCATCCAAATCATGAAGAGCTGAAGACAAAGTTCACCACCAGTGCTTGGCAACCAAGGAGGGGCTTTTGCTGTGC</dnaseq>| | sequence = <dnaseq>ATGGCGACCTTTGTGAGTGAGCTGGAGGTGGCCAAGAAGAACTTCAGTGAGGCCCTGGGGGACAACGTGAATCAATACTGGGCTAACTTAAGCTGTGGTTCAAGCGGAAGATCAGGAAAGAGGACTTTGACCTTGAAACTCATAGGTTTCTTACATAGGATAATATGCATCCTCACAATGATTTCCTCCTGGCCATTCTCACGCATTGTCAGATTTTGGTTTCTACATCAGAGGGTGCTGGATCTTTGCCCTGGATGGGGGGTTCTGCAGCAAAACCTGGAAAGCCCAATGGAAAGAAAAAGCTTTCTTCTGTCAGAAATTTGATCATAGATTTCAGCCTCACAGTCCTTTCTCAAGAGCCCAGTAATTTGTGGCAAAAGATCCCCAAGATGATGATGATTTGAAACTTTGTTCCCACACCATGATGCTTCTCATTCAAGGCTGGCTTGAAGGGAGAATGACAGTGACTGCTTATGAGCATGGGCTGGACAATGTCACCGAGGAGGCTATTTCAGCTCTTGTCTATGCTGTGGAGAATCATCCTAAAGATATACTGACATCAGTTGTGTCAAGAAGGAAAGCTTATCGGTTACGAGATGACCATTTTAAATATGCCTTTGGCAGTAATTTGACCCCACAGCCATACCTGAAGAATAATGTAGTAGCTTAGAACAACTTAATATAAAGCCCTCAAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCGGCTTCTCACCCACCTCCTGATGAAGCCGAGCAGCAGGCTGCATTCCTTCTGGCATGCTCTGGAGACACTCTATCTGCATCTTTATCTGCAGCGAACATGTATGAACTTTTTGAAGCTCTGCGGGTACACAGGGAAGTCATACCTACACATACTGTCTATGCCGTTAACATTGAAAGGATTATCATGAAAGTCTGGCATCCAAATCATGAAGAGCTGAAGACAAAGTTCACCACCAGTGCTTGGCAACCAAGGAGGGGCTTTTGCTGTGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG049411]] | + | [[Category:Intergenic]][[Category:NONHSAG049411]][[Category:Transcripts]] |
Latest revision as of 06:51, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT124761 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
996 nt |
| Genomic location |
chr8+:5706219..5707214 |
| Exon number |
1 |
| Exons |
5706219..5707214 |
| Genome context |
|
| Sequence |
000001 ATGGCGACCT TTGTGAGTGA GCTGGAGGTG GCCAAGAAGA ACTTCAGTGA GGCCCTGGGG GACAACGTGA ATCAATACTG 000080
000081 GGCTAACTTA AGCTGTGGTT CAAGCGGAAG ATCAGGAAAG AGGACTTTGA CCTTGAAACT CATAGGTTTC TTACATAGGA 000160 000161 TAATATGCAT CCTCACAATG ATTTCCTCCT GGCCATTCTC ACGCATTGTC AGATTTTGGT TTCTACATCA GAGGGTGCTG 000240 000241 GATCTTTGCC CTGGATGGGG GGTTCTGCAG CAAAACCTGG AAAGCCCAAT GGAAAGAAAA AGCTTTCTTC TGTCAGAAAT 000320 000321 TTGATCATAG ATTTCAGCCT CACAGTCCTT TCTCAAGAGC CCAGTAATTT GTGGCAAAAG ATCCCCAAGA TGATGATGAT 000400 000401 TTGAAACTTT GTTCCCACAC CATGATGCTT CTCATTCAAG GCTGGCTTGA AGGGAGAATG ACAGTGACTG CTTATGAGCA 000480 000481 TGGGCTGGAC AATGTCACCG AGGAGGCTAT TTCAGCTCTT GTCTATGCTG TGGAGAATCA TCCTAAAGAT ATACTGACAT 000560 000561 CAGTTGTGTC AAGAAGGAAA GCTTATCGGT TACGAGATGA CCATTTTAAA TATGCCTTTG GCAGTAATTT GACCCCACAG 000640 000641 CCATACCTGA AGAATAATGT AGTAGCTTAG AACAACTTAA TATAAAGCCC TCAAGCTTTT ACTGCTCCCT GTGCTGGTCA 000720 000721 GAATCCGGCT TCTCACCCAC CTCCTGATGA AGCCGAGCAG CAGGCTGCAT TCCTTCTGGC ATGCTCTGGA GACACTCTAT 000800 000801 CTGCATCTTT ATCTGCAGCG AACATGTATG AACTTTTTGA AGCTCTGCGG GTACACAGGG AAGTCATACC TACACATACT 000880 000881 GTCTATGCCG TTAACATTGA AAGGATTATC ATGAAAGTCT GGCATCCAAA TCATGAAGAG CTGAAGACAA AGTTCACCAC 000960 000961 CAGTGCTTGG CAACCAAGGA GGGGCTTTTG CTGTGC |
Predicted Small Protein
| Name | NONHSAT124761_smProtein_164:403 |
| Length | 80 |
| Molecular weight | 8642.1487 |
| Aromaticity | 0.0506329113924 |
| Instability index | 41.4379746835 |
| Isoelectric point | 9.65521240234 |
| Runs | 10 |
| Runs residual | 0.013698630137 |
| Runs probability | 0.0494612259318 |
| Amino acid sequence | MHPHNDFLLAILTHCQILVSTSEGAGSLPWMGGSAAKPGKPNGKKKLSSVRNLIIDFSLT VLSQEPSNLWQKIPKMMMI |
| Secondary structure | LLLLHHHHHHHHHHLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEEEEEEEE EELLLLLHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
