Difference between revisions of "NONHSAT081716"
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sequence = <dnaseq>AGTATCTGACCAGTCCCAGCTCTTTTGCCAGGGCACACGTTTCCAAGGGCATGGGCCAGCCACTGGACAGGCCCTCTTCGGGTGAGCGATGGCAAAATATAGGGTCCCTCCTAAGAACAGTCATTAGGAGAGCAGCAGCTGTGAGGGCTGATTAGCCTAGAAGGGAACATTGGATGTGTCAGCCAATCCTCTAGCACAACAGAATTAACATAAAACAAGCATTTTGGATGAGGGATACTCAACCTGCACTGTTACTCACTGGAGAGCGTCTGAGTGACCCACAGACTCACACCCCTTCTTACCCACCTCATCTGCGGGGAGGCGGACCAGGACATGTAGAGCAAGATGAGGAAGAGCAGCACCACGAAGGCAGCCAGGCTCACCCAGAATGCGATCACGATGGAATCTGCGGGAGGAGGAGATGCATCTCAGCGCTGGGTTATGTCAACATAAAGCAACGCTGAGGGGCAGTAAGGAGTCCCAGGGTATTGTGGAATGAGGGCCCTGAGTTTCGGTTGTCCTCCAGCCTCTCAGCTGTTACCATGGGGAAGATCTCCCATTAACAATAACTTTGGGAAAGAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGTATCTGACCAGTCCCAGCTCTTTTGCCAGGGCACACGTTTCCAAGGGCATGGGCCAGCCACTGGACAGGCCCTCTTCGGGTGAGCGATGGCAAAATATAGGGTCCCTCCTAAGAACAGTCATTAGGAGAGCAGCAGCTGTGAGGGCTGATTAGCCTAGAAGGGAACATTGGATGTGTCAGCCAATCCTCTAGCACAACAGAATTAACATAAAACAAGCATTTTGGATGAGGGATACTCAACCTGCACTGTTACTCACTGGAGAGCGTCTGAGTGACCCACAGACTCACACCCCTTCTTACCCACCTCATCTGCGGGGAGGCGGACCAGGACATGTAGAGCAAGATGAGGAAGAGCAGCACCACGAAGGCAGCCAGGCTCACCCAGAATGCGATCACGATGGAATCTGCGGGAGGAGGAGATGCATCTCAGCGCTGGGTTATGTCAACATAAAGCAACGCTGAGGGGCAGTAAGGAGTCCCAGGGTATTGTGGAATGAGGGCCCTGAGTTTCGGTTGTCCTCCAGCCTCTCAGCTGTTACCATGGGGAAGATCTCCCATTAACAATAACTTTGGGAAAGAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG032666]] | + | [[Category:Antisense]][[Category:NONHSAG032666]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:07, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT081716 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
596 nt |
| Genomic location |
chr21-:33678775..33681048 |
| Exon number |
2 |
| Exons |
33678775..33679137,33680830..33681048 |
| Genome context |
|
| Sequence |
000001 AGTATCTGAC CAGTCCCAGC TCTTTTGCCA GGGCACACGT TTCCAAGGGC ATGGGCCAGC CACTGGACAG GCCCTCTTCG 000080
000081 GGTGAGCGAT GGCAAAATAT AGGGTCCCTC CTAAGAACAG TCATTAGGAG AGCAGCAGCT GTGAGGGCTG ATTAGCCTAG 000160 000161 AAGGGAACAT TGGATGTGTC AGCCAATCCT CTAGCACAAC AGAATTAACA TAAAACAAGC ATTTTGGATG AGGGATACTC 000240 000241 AACCTGCACT GTTACTCACT GGAGAGCGTC TGAGTGACCC ACAGACTCAC ACCCCTTCTT ACCCACCTCA TCTGCGGGGA 000320 000321 GGCGGACCAG GACATGTAGA GCAAGATGAG GAAGAGCAGC ACCACGAAGG CAGCCAGGCT CACCCAGAAT GCGATCACGA 000400 000401 TGGAATCTGC GGGAGGAGGA GATGCATCTC AGCGCTGGGT TATGTCAACA TAAAGCAACG CTGAGGGGCA GTAAGGAGTC 000480 000481 CCAGGGTATT GTGGAATGAG GGCCCTGAGT TTCGGTTGTC CTCCAGCCTC TCAGCTGTTA CCATGGGGAA GATCTCCCAT 000560 000561 TAACAATAAC TTTGGGAAAG AAAAAAAAAA AAAAAA |
Predicted Small Protein
| Name | NONHSAT081716_smProtein_227:463 |
| Length | 79 |
| Molecular weight | 8704.4535 |
| Aromaticity | 0.025641025641 |
| Instability index | 68.6576923077 |
| Isoelectric point | 5.91217041016 |
| Runs | 9 |
| Runs residual | 0.0182926829268 |
| Runs probability | 0.0274784588511 |
| Amino acid sequence | MRDTQPALLLTGERLSDPQTHTPSYPPHLRGGGPGHVEQDEEEQHHEGSQAHPECDHDGI CGRRRCISALGYVNIKQR |
| Secondary structure | LLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLL LLLEEEEEELLEEEEEEL |
| PRMN | - |
| PiMo | - |
