Difference between revisions of "NONHSAT058687"

From LncRNAWiki
Jump to: navigation, search
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>ACCTGAGCAAGGAGAGGTTCTCTGTGCTTAGTGTCAAATCAACAGTGCCTTGACATCTTTCCACACTGCTTTGGAACTTGCAGTAGACCAGAGAGAAATTCAACATGTCTGTCTGTATGAAATTGGTAAATGTGAAATGTCTGTCCAGCCTCTTGTTAAGAAGTAGTATTAATGCAGTATTTTAGCTTTCATGCCATTCAGTGTGTGTCTACAAAATGCTTGGTGCCTTCTGTAGTAAGAAGGACTTCAGTTATTCCCGTAGCACATGCAATGATACTTCTCTCTGATTCTCATTACGTTTTTATAACATTTTTTCTTTACAGCATTTTGATTTTTTAGGATAATAGGTGATGTTAAATGAATTGATTAAATGACCAGAAATACCTTATTGGACTGCATTAGAATTCAAAGCTCTTTGTTCCTCCTTCCCACTAATGTTTACTTGAGAAGAAAAATAggagacaggagatagttggactgaagtcccagtgtttttcaccaactagctct</dnaseq>|
 
sequence = <dnaseq>ACCTGAGCAAGGAGAGGTTCTCTGTGCTTAGTGTCAAATCAACAGTGCCTTGACATCTTTCCACACTGCTTTGGAACTTGCAGTAGACCAGAGAGAAATTCAACATGTCTGTCTGTATGAAATTGGTAAATGTGAAATGTCTGTCCAGCCTCTTGTTAAGAAGTAGTATTAATGCAGTATTTTAGCTTTCATGCCATTCAGTGTGTGTCTACAAAATGCTTGGTGCCTTCTGTAGTAAGAAGGACTTCAGTTATTCCCGTAGCACATGCAATGATACTTCTCTCTGATTCTCATTACGTTTTTATAACATTTTTTCTTTACAGCATTTTGATTTTTTAGGATAATAGGTGATGTTAAATGAATTGATTAAATGACCAGAAATACCTTATTGGACTGCATTAGAATTCAAAGCTCTTTGTTCCTCCTTCCCACTAATGTTTACTTGAGAAGAAAAATAggagacaggagatagttggactgaagtcccagtgtttttcaccaactagctct</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG023558]]
+
[[Category:Sense]][[Category:NONHSAG023558]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:35, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT058687

Source

NONCODE4.0

Same with

,

Classification

sense

Length

510 nt

Genomic location

chr18+:21694304..21694996

Exon number

2

Exons

21694304..21694334,21694518..21694996

Genome context

Sequence
000001 ACCTGAGCAA GGAGAGGTTC TCTGTGCTTA GTGTCAAATC AACAGTGCCT TGACATCTTT CCACACTGCT TTGGAACTTG 000080
000081 CAGTAGACCA GAGAGAAATT CAACATGTCT GTCTGTATGA AATTGGTAAA TGTGAAATGT CTGTCCAGCC TCTTGTTAAG 000160
000161 AAGTAGTATT AATGCAGTAT TTTAGCTTTC ATGCCATTCA GTGTGTGTCT ACAAAATGCT TGGTGCCTTC TGTAGTAAGA 000240
000241 AGGACTTCAG TTATTCCCGT AGCACATGCA ATGATACTTC TCTCTGATTC TCATTACGTT TTTATAACAT TTTTTCTTTA 000320
000321 CAGCATTTTG ATTTTTTAGG ATAATAGGTG ATGTTAAATG AATTGATTAA ATGACCAGAA ATACCTTATT GGACTGCATT 000400
000401 AGAATTCAAA GCTCTTTGTT CCTCCTTCCC ACTAATGTTT ACTTGAGAAG AAAAATAgga gacaggagat agttggactg 000480
000481 aagtcccagt gtttttcacc aactagctct
[back to top]

Predicted Small Protein

Name NONHSAT058687_smProtein_104:184
Length 27
Molecular weight 2856.5364
Aromaticity 0.0384615384615
Instability index 81.2115384615
Isoelectric point 9.50006103516
Runs 5
Runs residual 0.0169946332737
Runs probability 0.0102455396573
Amino acid sequence MSVCMKLVNVKCLSSLLLRSSINAVF
Secondary structure LLEEEELLLHHHHHHHHHHHHHHHLL
PRMN -
PiMo -