Difference between revisions of "ENST00000448058.1"
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sequence = <dnaseq>CTGAGCTTCACACCTTGGGTCAGATGTGTGTTGTCAGCTGAGAAACTGAGCTGCATTCTTGAGCATGAGCCAGACGCCTTGACAGATGGTTATTCTTTTCTGCTTGACCTCGAGTTACAGAGATGCAGATGAAGTCAAAGAGGATACCAGATGCAGCCAGTCTGCTGGGGAGGCACGTACGTCTGAGTGGGCCCAGCACAGCTGTTCTCCAGGGCAAGGCTTGGCCATGGCAGCTGCCCCAGCGCCCGCATTCAGCCCAACCCACCAGGTCACCCCAGTCCAGTCCGTGGTGCTCAGATCCCCAAGCAATCACAGGTCAGAGGCGGAAAGAACTACGTGAATGTGTACAGTGATATTGGGCACATGCTCTGAAGGAAGGGAAACCGAAGAACGTCAAGGGGCAGCGTTCAGAGGAGGGGAAAGAATGCAGAGTCTGGGTGTGATCCCTACCTGGACTCTCTTAGAAGCTCCACTATCCTCTTCTCTAATGATCTGTCTTCCCATTCCAGAATTTCTTACCTTAACCTACTTAGCCTGAGTTAAATAAGCATCTGCATGCAGAAATAAATAAGTGAGGGAATTTGTACTTTTCTGCAA</dnaseq>| | sequence = <dnaseq>CTGAGCTTCACACCTTGGGTCAGATGTGTGTTGTCAGCTGAGAAACTGAGCTGCATTCTTGAGCATGAGCCAGACGCCTTGACAGATGGTTATTCTTTTCTGCTTGACCTCGAGTTACAGAGATGCAGATGAAGTCAAAGAGGATACCAGATGCAGCCAGTCTGCTGGGGAGGCACGTACGTCTGAGTGGGCCCAGCACAGCTGTTCTCCAGGGCAAGGCTTGGCCATGGCAGCTGCCCCAGCGCCCGCATTCAGCCCAACCCACCAGGTCACCCCAGTCCAGTCCGTGGTGCTCAGATCCCCAAGCAATCACAGGTCAGAGGCGGAAAGAACTACGTGAATGTGTACAGTGATATTGGGCACATGCTCTGAAGGAAGGGAAACCGAAGAACGTCAAGGGGCAGCGTTCAGAGGAGGGGAAAGAATGCAGAGTCTGGGTGTGATCCCTACCTGGACTCTCTTAGAAGCTCCACTATCCTCTTCTCTAATGATCTGTCTTCCCATTCCAGAATTTCTTACCTTAACCTACTTAGCCTGAGTTAAATAAGCATCTGCATGCAGAAATAAATAAGTGAGGGAATTTGTACTTTTCTGCAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-EGLN1-2]] | + | [[Category:Intergenic]][[Category:lnc-EGLN1-2]][[Category:NONHSAG004621]][[Category:ENSG00000229228.1]][[Category:Transcripts]] |
Latest revision as of 15:54, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000448058.1 |
| Source |
Gencode19 |
| Same with |
lnc-EGLN1-2:1,NONHSAT010185 |
| Classification |
intergenic |
| Length |
597 nt |
| Genomic location |
chr1-:231727038..231747836 |
| Exon number |
2 |
| Exons |
231727038..231727546,231747749..231747836 |
| Genome context |
|
| Sequence |
000001 CTGAGCTTCA CACCTTGGGT CAGATGTGTG TTGTCAGCTG AGAAACTGAG CTGCATTCTT GAGCATGAGC CAGACGCCTT 000080
000081 GACAGATGGT TATTCTTTTC TGCTTGACCT CGAGTTACAG AGATGCAGAT GAAGTCAAAG AGGATACCAG ATGCAGCCAG 000160 000161 TCTGCTGGGG AGGCACGTAC GTCTGAGTGG GCCCAGCACA GCTGTTCTCC AGGGCAAGGC TTGGCCATGG CAGCTGCCCC 000240 000241 AGCGCCCGCA TTCAGCCCAA CCCACCAGGT CACCCCAGTC CAGTCCGTGG TGCTCAGATC CCCAAGCAAT CACAGGTCAG 000320 000321 AGGCGGAAAG AACTACGTGA ATGTGTACAG TGATATTGGG CACATGCTCT GAAGGAAGGG AAACCGAAGA ACGTCAAGGG 000400 000401 GCAGCGTTCA GAGGAGGGGA AAGAATGCAG AGTCTGGGTG TGATCCCTAC CTGGACTCTC TTAGAAGCTC CACTATCCTC 000480 000481 TTCTCTAATG ATCTGTCTTC CCATTCCAGA ATTTCTTACC TTAACCTACT TAGCCTGAGT TAAATAAGCA TCTGCATGCA 000560 000561 GAAATAAATA AGTGAGGGAA TTTGTACTTT TCTGCAA |
Predicted Small Protein
| Name | ENST00000448058.1_smProtein_122:352 |
| Length | 77 |
| Molecular weight | 8541.7124 |
| Aromaticity | 0.0394736842105 |
| Instability index | 73.8868421053 |
| Isoelectric point | 11.2556762695 |
| Runs | 11 |
| Runs residual | 0.00332728372656 |
| Runs probability | 0.0321658556952 |
| Amino acid sequence | MQMKSKRIPDAASLLGRHVRLSGPSTAVLQGKAWPWQLPQRPHSAQPTRSPQSSPWCSDP QAITGQRRKELRECVQ |
| Secondary structure | LLLLLLLLHHHHHHHLLLEEELLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHLLHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
