Difference between revisions of "NONHSAT147912"

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[[Category:Antisense]]
 
[[Category:Antisense]]
[[Category:Sense]][[Category:NONHSAG018382]]
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[[Category:Sense]][[Category:NONHSAG018382]][[Category:Transcripts]]

Latest revision as of 03:25, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT147912

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

1199 nt

Genomic location

chr16-:3072626..3074270

Exon number

3

Exons

3072626..3072999,3073234..3073969,3074182..3074270

Genome context

Sequence
000001 CGTGCCTAGA GCGGTTCCTC TCCGTGGCGC CCTACCGCCT TCGGCGCGAA GGTGGCTGGT GCGTACCGTC CCGAACCCTA 000080
000081 GGAGCCGAGA TCCCACCCGC AGGACCCCAA AACCCAATGA TCCTGCAGCA GCCCTTGCAG CGAGGCCCCC AGGGAGGGGC 000160
000161 CCAGCGCCTC CCGCGGGCCG CCTTGGGGGT GACTTGGGGC CTGGACGCCA GGTGCGTGTA GGGGACCAGG GTGGGCCTGA 000240
000241 CCAAGGGCCG CAGGAGCTTT GGCTGGGTGC TCAGGACTGG TCTGCAGGAT GAATACGGGG TGGGGCGAAT CGGCGGGGCT 000320
000321 TAGGCGTGAG CTGAGATGGG ACTGGGGCTG CGGCTGAGGG TCGAGACTTC CGAGGTACCC TGCTGGATGG TCCAGGAGAG 000400
000401 CGGGGACCGG CACCAGCTGA GACAGGAATG GGCTTGGGGC TCCTGGCTGA TGCTGCAGGC TTAGGCGGGC AGATCCTTGG 000480
000481 GAAGGGGCCA AGAGGGTGGG GTGCACCAGG CTCTCTTTTT TTCCCAGCTC CCCTCTCCGA GGAGCTGTGC CCATGAGCAC 000560
000561 CAAGCGGCGC CTGGAGGAGG AGCAGTGAGT TTGGGGGCAG GGAGGGACTC CCAACAAGAT CTCTGTCACC TCTGGTCCCC 000640
000641 AACAGGCTGC CTCCTGTGTC AGTATCCCAG CCTGCCTCTC TGCCATCTCT CCCCAGGGAG CCTCTGCGCA AGCAGTTTCT 000720
000721 GTCTGAGGAG AACATGGCCA CCCACTTCTC TCAACTCAGC CTGCACAATG ACCACCCCTA CTGCAGCCCC CCCATGACCT 000800
000801 TCTCCCCAGC CCTGCCCCCA CTCAGGAGCC CTTGCTCTGA GCTGCTTCTC TGGCGCTATC CTGGCAGCCT CATCCCTGAG 000880
000881 GCCCTCCGTC TGCTGAGGCT GGGGGACACC CCCAGTCCCC CCTACCCTGC AACCCCAGCT GGGGACATAA TGGAGCTCTG 000960
000961 AGTGCTGGTG GACAGTGCCC CTCCCACCTT CCTTCTTCCC CACAACAGAA GAGACCAGCG ACTCCCGCAA AGGGACAAGG 001040
001041 TTCCTCCCTC TCCTGCAGAG TAGGCATCTG GGCACCAAGA CCTTCCCTCA ACAGAGGACA CTGAGCCCAA CGGAGTTCTG 001120
001121 GGATGGGAGG GGTGGGAGCA TGGGAAGGGA GGCATCCCAC CCCCAAGAAG AACTGAATAA AGATTGCTGA GCAAAGGAA
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Predicted Small Protein

Name NONHSAT147912_smProtein_335:463
Length 43
Molecular weight 4971.6787
Aromaticity 0.0952380952381
Instability index 64.3785714286
Isoelectric point 5.57366943359
Runs 7
Runs residual 0.00949367088608
Runs probability 0.0250334367981
Amino acid sequence MGLGLRLRVETSEVPCWMVQESGDRHQLRQEWAWGSWLMLQA
Secondary structure LLLLEEEEEELLLLLLHHHHLLLLHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -