Difference between revisions of "NONHSAT059131"

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sequence = <dnaseq>tggctattgtcattcaggatatagctgatacgtggtaccagttgctggaacacacagattcgggaatcaagggtagatacaggattggtccctctcaccatcactctcagtgatccactagcaCCAAGGTGAAAGAATGTCTAACATTCAGAAAATACACTCAAGAATAGGTCTGAAATCCAGGAGAATGTCTCTTGGTGCCATGGGCCCTtgtagcaagcatggcctgaaaaagcgaagtcacctgagggctcagacccccagggatatcaataagtgtcaacccatcaggcaagcaacctggaacagcccaaatgctgaaaatgaggaaaatcctgaatagaggctggagaaggaagacaatgaacagcaacgtcagcccctggatttacagcagcagggagcagggttgtagctccttctgttaactttcttGTATGAAATCTTTTTGCTAGATGTCTGGCTACCACCTTGAAGACCCAGTAACAGAATGGACTTAATGAATGTGGGGCATGGGTGGATCAGAGTGGTGCAAGCAGGGAGTAGACCACTTTCCAtgtcctgcgtcacatccccttcctcggcctctgaccagctgcagctgtggcaggcagttctgtgtgagcttggactcatgctgacagcaccccgatttccatcacacggagtgcatcattcagatttctatttcagctcctcctccgaagtcccaggagtctgtttggcttgtgtgactcaagcagagcccagaaattaggggagttaatggccctgggacaaccctcaacaatggaggatgggagccggtagacatatgccccagcctctttgagttggacagttctgggaagcattctgtatgtttttcaggagatcccagcggaattgagcccccattgctcatggcagtgactttgatgatggaccttatattggcttttcctcctcactctcactttttcattctcctcaattcctcacttctatgtcctgagatcaactcccagttaaaccacctgcatctaaatccttgtctcaatctctgctcctaggagaattcaaactaagacagGAAGGAAAAGGTCAAGTTCACTCTGAGCTTGACGTGCTGAAGAGACATCCCGTGGAAATGTGCAGCAGGCAGTGGCCACGTGACTTTTGGAGATGCTGATTTATGTATCAGCATGTGGTGACAGATAAAACCACAGGCTAGAGAAAATGCATTCCTAAGAGGCCAGTGCAGAGGCATCCTTCCAAGGcaggggttctcaaccacgagccattttaccccccagtaaatatttggcaatgcccgaggacatttttggttgtcacaacgggaacaggaacctgctactggcatctaatgagtagaggtgaaggatgctgctgaacatcctacagtgcacaggtcagaaccccataacaaagaatgatccagcccaaaatatcactagtgccgaggctgagaaaccTGTTCTAAGGGCATTGCAAAGTACCATGAGAGTGATGCTGTGAAAGCTGGTTTCACATAGCCAGAGGGGCCAGCAGGCAGTGCTGCAGGGGCCATGGGAAGTAAGAACCAATTATTGCCCATTGAGCTCAGCACCATGGGGCAGAAGCCAGTGCCTTGAAGGCAGTCGAtgaagatgagtacagactctttccaggagctttgaggggaaggaaaagagcaagtgtttgggcttagccagaaggagctgtagagtcaaggaagagttttaaaagatactggaatgataaacatcctgtatatgctgatgacaaagcaccagttgggacaccagaaagggatgactgatggaagagagagagCCCCGGGACATAATGTGGTACTCAAAGCCAGATGAACTAACTTGGATCAGGTAAGGAAAACCTTCCCTGGAAGCTGGAAGGAGGCAAGGGTGGGCATAGTTATAC</dnaseq>|
 
sequence = <dnaseq>tggctattgtcattcaggatatagctgatacgtggtaccagttgctggaacacacagattcgggaatcaagggtagatacaggattggtccctctcaccatcactctcagtgatccactagcaCCAAGGTGAAAGAATGTCTAACATTCAGAAAATACACTCAAGAATAGGTCTGAAATCCAGGAGAATGTCTCTTGGTGCCATGGGCCCTtgtagcaagcatggcctgaaaaagcgaagtcacctgagggctcagacccccagggatatcaataagtgtcaacccatcaggcaagcaacctggaacagcccaaatgctgaaaatgaggaaaatcctgaatagaggctggagaaggaagacaatgaacagcaacgtcagcccctggatttacagcagcagggagcagggttgtagctccttctgttaactttcttGTATGAAATCTTTTTGCTAGATGTCTGGCTACCACCTTGAAGACCCAGTAACAGAATGGACTTAATGAATGTGGGGCATGGGTGGATCAGAGTGGTGCAAGCAGGGAGTAGACCACTTTCCAtgtcctgcgtcacatccccttcctcggcctctgaccagctgcagctgtggcaggcagttctgtgtgagcttggactcatgctgacagcaccccgatttccatcacacggagtgcatcattcagatttctatttcagctcctcctccgaagtcccaggagtctgtttggcttgtgtgactcaagcagagcccagaaattaggggagttaatggccctgggacaaccctcaacaatggaggatgggagccggtagacatatgccccagcctctttgagttggacagttctgggaagcattctgtatgtttttcaggagatcccagcggaattgagcccccattgctcatggcagtgactttgatgatggaccttatattggcttttcctcctcactctcactttttcattctcctcaattcctcacttctatgtcctgagatcaactcccagttaaaccacctgcatctaaatccttgtctcaatctctgctcctaggagaattcaaactaagacagGAAGGAAAAGGTCAAGTTCACTCTGAGCTTGACGTGCTGAAGAGACATCCCGTGGAAATGTGCAGCAGGCAGTGGCCACGTGACTTTTGGAGATGCTGATTTATGTATCAGCATGTGGTGACAGATAAAACCACAGGCTAGAGAAAATGCATTCCTAAGAGGCCAGTGCAGAGGCATCCTTCCAAGGcaggggttctcaaccacgagccattttaccccccagtaaatatttggcaatgcccgaggacatttttggttgtcacaacgggaacaggaacctgctactggcatctaatgagtagaggtgaaggatgctgctgaacatcctacagtgcacaggtcagaaccccataacaaagaatgatccagcccaaaatatcactagtgccgaggctgagaaaccTGTTCTAAGGGCATTGCAAAGTACCATGAGAGTGATGCTGTGAAAGCTGGTTTCACATAGCCAGAGGGGCCAGCAGGCAGTGCTGCAGGGGCCATGGGAAGTAAGAACCAATTATTGCCCATTGAGCTCAGCACCATGGGGCAGAAGCCAGTGCCTTGAAGGCAGTCGAtgaagatgagtacagactctttccaggagctttgaggggaaggaaaagagcaagtgtttgggcttagccagaaggagctgtagagtcaaggaagagttttaaaagatactggaatgataaacatcctgtatatgctgatgacaaagcaccagttgggacaccagaaagggatgactgatggaagagagagagCCCCGGGACATAATGTGGTACTCAAAGCCAGATGAACTAACTTGGATCAGGTAAGGAAAACCTTCCCTGGAAGCTGGAAGGAGGCAAGGGTGGGCATAGTTATAC</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG023784]]
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[[Category:Intergenic]][[Category:NONHSAG023784]][[Category:Transcripts]]

Latest revision as of 22:36, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT059131

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1941 nt

Genomic location

chr18+:43857448..43859388

Exon number

1

Exons

43857448..43859388

Genome context

Sequence
000001 tggctattgt cattcaggat atagctgata cgtggtacca gttgctggaa cacacagatt cgggaatcaa gggtagatac 000080
000081 aggattggtc cctctcacca tcactctcag tgatccacta gcaCCAAGGT GAAAGAATGT CTAACATTCA GAAAATACAC 000160
000161 TCAAGAATAG GTCTGAAATC CAGGAGAATG TCTCTTGGTG CCATGGGCCC Ttgtagcaag catggcctga aaaagcgaag 000240
000241 tcacctgagg gctcagaccc ccagggatat caataagtgt caacccatca ggcaagcaac ctggaacagc ccaaatgctg 000320
000321 aaaatgagga aaatcctgaa tagaggctgg agaaggaaga caatgaacag caacgtcagc ccctggattt acagcagcag 000400
000401 ggagcagggt tgtagctcct tctgttaact ttcttGTATG AAATCTTTTT GCTAGATGTC TGGCTACCAC CTTGAAGACC 000480
000481 CAGTAACAGA ATGGACTTAA TGAATGTGGG GCATGGGTGG ATCAGAGTGG TGCAAGCAGG GAGTAGACCA CTTTCCAtgt 000560
000561 cctgcgtcac atccccttcc tcggcctctg accagctgca gctgtggcag gcagttctgt gtgagcttgg actcatgctg 000640
000641 acagcacccc gatttccatc acacggagtg catcattcag atttctattt cagctcctcc tccgaagtcc caggagtctg 000720
000721 tttggcttgt gtgactcaag cagagcccag aaattagggg agttaatggc cctgggacaa ccctcaacaa tggaggatgg 000800
000801 gagccggtag acatatgccc cagcctcttt gagttggaca gttctgggaa gcattctgta tgtttttcag gagatcccag 000880
000881 cggaattgag cccccattgc tcatggcagt gactttgatg atggacctta tattggcttt tcctcctcac tctcactttt 000960
000961 tcattctcct caattcctca cttctatgtc ctgagatcaa ctcccagtta aaccacctgc atctaaatcc ttgtctcaat 001040
001041 ctctgctcct aggagaattc aaactaagac agGAAGGAAA AGGTCAAGTT CACTCTGAGC TTGACGTGCT GAAGAGACAT 001120
001121 CCCGTGGAAA TGTGCAGCAG GCAGTGGCCA CGTGACTTTT GGAGATGCTG ATTTATGTAT CAGCATGTGG TGACAGATAA 001200
001201 AACCACAGGC TAGAGAAAAT GCATTCCTAA GAGGCCAGTG CAGAGGCATC CTTCCAAGGc aggggttctc aaccacgagc 001280
001281 cattttaccc cccagtaaat atttggcaat gcccgaggac atttttggtt gtcacaacgg gaacaggaac ctgctactgg 001360
001361 catctaatga gtagaggtga aggatgctgc tgaacatcct acagtgcaca ggtcagaacc ccataacaaa gaatgatcca 001440
001441 gcccaaaata tcactagtgc cgaggctgag aaaccTGTTC TAAGGGCATT GCAAAGTACC ATGAGAGTGA TGCTGTGAAA 001520
001521 GCTGGTTTCA CATAGCCAGA GGGGCCAGCA GGCAGTGCTG CAGGGGCCAT GGGAAGTAAG AACCAATTAT TGCCCATTGA 001600
001601 GCTCAGCACC ATGGGGCAGA AGCCAGTGCC TTGAAGGCAG TCGAtgaaga tgagtacaga ctctttccag gagctttgag 001680
001681 gggaaggaaa agagcaagtg tttgggctta gccagaagga gctgtagagt caaggaagag ttttaaaaga tactggaatg 001760
001761 ataaacatcc tgtatatgct gatgacaaag caccagttgg gacaccagaa agggatgact gatggaagag agagagCCCC 001840
001841 GGGACATAAT GTGGTACTCA AAGCCAGATG AACTAACTTG GATCAGGTAA GGAAAACCTT CCCTGGAAGC TGGAAGGAGG 001920
001921 CAAGGGTGGG CATAGTTATA C
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Predicted Small Protein

Name NONHSAT059131_smProtein_902:1051
Length 50
Molecular weight 5517.5562
Aromaticity 0.0612244897959
Instability index 44.6734693878
Isoelectric point 5.96221923828
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0494808534024
Amino acid sequence MAVTLMMDLILAFPPHSHFFILLNSSLLCPEINSQLNHLHLNPCLNLCS
Secondary structure LHHHHHHHHHHHLLLLLLEEELLLLLLLLHHHHHHHHHLLLLHHHLLLL
PRMN -
PiMo -