Difference between revisions of "ENST00000420161.1"

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sequence = <dnaseq>CTGGCTGCCCCCTGGTGGCCGGAGGCCGTTACTGTCGCGGCTGAGGGGGCGTCCCGGTGTATCCGCAGCGCGCCCTGTCCCGCCATATACATTCCGTGCTTTTCAAACACCCGCCGTGGGCTAAGCATGGGACCCACGTGGGGCGGGGACACACGGCGATAAAGAGCCAGGCCCTCGCTGCCAAGGAGCTTTCCCGTAACACCGATGCATCAAACAAAAGATATTAAAGACATTGGCGGTAACACTGGAATGGATGTGAAGATGGGAGAGGTCTACCCATAGCCCATTCTACAGAGCAGAACTGAGGCTCAGATATTGAGGTAGATTAAAGATGGCTGCCAGTTCAGTGCCACTTGTCCCGTTGAACTGTGAAGTCTTATCCCCCTCCTTGGGTCTGCACCAGCCTTGATGACTTGCTCACTACAATGTGGTAGAAGTGATGGTGCATGACTTCCAAGGTTAGATCAGAAGAAGCCTTGAAGTTCCTGCCTTGGTCTCTTGAAACAACTTACCGTGTAAGAAGTCTGACACCCTGAGACCGCCATGTTGGCACAGTTATGGGTGGATGCTCCAGTAGATGGATCCAGCTGAGCCCAGCCCTCCAGCCATTCCCACCCCCAAACCATGGGTGAAACTGTCTTGGACCCTCCAGTCCAGCCCACTCAACATCTAAATACCACAGACTGACCTCAGCTGATACCATCACCCAGTTAAAATGTGCCTGAAACTGACCCACAAAATCATGAGATAAACTAAAATGGTTGTTGTCCTAAGCCACTAAGATAATAGAGCAGATATATATGCACTTAACACTC</dnaseq>|
 
sequence = <dnaseq>CTGGCTGCCCCCTGGTGGCCGGAGGCCGTTACTGTCGCGGCTGAGGGGGCGTCCCGGTGTATCCGCAGCGCGCCCTGTCCCGCCATATACATTCCGTGCTTTTCAAACACCCGCCGTGGGCTAAGCATGGGACCCACGTGGGGCGGGGACACACGGCGATAAAGAGCCAGGCCCTCGCTGCCAAGGAGCTTTCCCGTAACACCGATGCATCAAACAAAAGATATTAAAGACATTGGCGGTAACACTGGAATGGATGTGAAGATGGGAGAGGTCTACCCATAGCCCATTCTACAGAGCAGAACTGAGGCTCAGATATTGAGGTAGATTAAAGATGGCTGCCAGTTCAGTGCCACTTGTCCCGTTGAACTGTGAAGTCTTATCCCCCTCCTTGGGTCTGCACCAGCCTTGATGACTTGCTCACTACAATGTGGTAGAAGTGATGGTGCATGACTTCCAAGGTTAGATCAGAAGAAGCCTTGAAGTTCCTGCCTTGGTCTCTTGAAACAACTTACCGTGTAAGAAGTCTGACACCCTGAGACCGCCATGTTGGCACAGTTATGGGTGGATGCTCCAGTAGATGGATCCAGCTGAGCCCAGCCCTCCAGCCATTCCCACCCCCAAACCATGGGTGAAACTGTCTTGGACCCTCCAGTCCAGCCCACTCAACATCTAAATACCACAGACTGACCTCAGCTGATACCATCACCCAGTTAAAATGTGCCTGAAACTGACCCACAAAATCATGAGATAAACTAAAATGGTTGTTGTCCTAAGCCACTAAGATAATAGAGCAGATATATATGCACTTAACACTC</dnaseq>|
 
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[[Category:Intergenic]][[Category:ENSG00000243179.1]]
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[[Category:Intergenic]][[Category:ENSG00000243179.1]][[Category:lnc-ACTR3-1]][[Category:Transcripts]]

Latest revision as of 15:03, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000420161.1

Source

Gencode19

Same with

lnc-ACTR3-1:3

Classification

intergenic

Length

815 nt

Genomic location

chr2+:114737486..114740835

Exon number

2

Exons

114737486..114737705,114740241..114740835

Genome context

Sequence
000001 CTGGCTGCCC CCTGGTGGCC GGAGGCCGTT ACTGTCGCGG CTGAGGGGGC GTCCCGGTGT ATCCGCAGCG CGCCCTGTCC 000080
000081 CGCCATATAC ATTCCGTGCT TTTCAAACAC CCGCCGTGGG CTAAGCATGG GACCCACGTG GGGCGGGGAC ACACGGCGAT 000160
000161 AAAGAGCCAG GCCCTCGCTG CCAAGGAGCT TTCCCGTAAC ACCGATGCAT CAAACAAAAG ATATTAAAGA CATTGGCGGT 000240
000241 AACACTGGAA TGGATGTGAA GATGGGAGAG GTCTACCCAT AGCCCATTCT ACAGAGCAGA ACTGAGGCTC AGATATTGAG 000320
000321 GTAGATTAAA GATGGCTGCC AGTTCAGTGC CACTTGTCCC GTTGAACTGT GAAGTCTTAT CCCCCTCCTT GGGTCTGCAC 000400
000401 CAGCCTTGAT GACTTGCTCA CTACAATGTG GTAGAAGTGA TGGTGCATGA CTTCCAAGGT TAGATCAGAA GAAGCCTTGA 000480
000481 AGTTCCTGCC TTGGTCTCTT GAAACAACTT ACCGTGTAAG AAGTCTGACA CCCTGAGACC GCCATGTTGG CACAGTTATG 000560
000561 GGTGGATGCT CCAGTAGATG GATCCAGCTG AGCCCAGCCC TCCAGCCATT CCCACCCCCA AACCATGGGT GAAACTGTCT 000640
000641 TGGACCCTCC AGTCCAGCCC ACTCAACATC TAAATACCAC AGACTGACCT CAGCTGATAC CATCACCCAG TTAAAATGTG 000720
000721 CCTGAAACTG ACCCACAAAA TCATGAGATA AACTAAAATG GTTGTTGTCC TAAGCCACTA AGATAATAGA GCAGATATAT 000800
000801 ATGCACTTAA CACTC
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Predicted Small Protein

Name ENST00000420161.1_smProtein_446:535
Length 30
Molecular weight 3426.9374
Aromaticity 0.103448275862
Instability index 50.8103448276
Isoelectric point 9.69073486328
Runs 7
Runs residual 0.0418103448276
Runs probability 0.0376258611552
Amino acid sequence MTSKVRSEEALKFLPWSLETTYRVRSLTP
Secondary structure LLLLLLLHHHHHHLLLLHHHLLEEELLLL
PRMN -
PiMo -