Difference between revisions of "NONHSAT059717"

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sequence = <dnaseq>ATATTATTTAAAAATAAAATCGAACAAATACCTATGCATACATTTGAGGACAGACTTAAGTGAAGGACAATAGCCCTCAAAAATAAGCTTCTAGTTGTGATTCTGTCTTCTCTTTATAACATGACTAGCATTTATTTTTTTCAGCAGAATAATCACACTATGAATTATTTCCTATTGAAAAATCTCCTTTTCCTAAAACTTCATTTGAACACCATTGTTTCTACATACTTCTCTTTGTTTTCATGCAACTCTTCTTTAGAGGCAATGTGGACTTTAGATCTCTGGGAAAGGGCATACCGGAGGATTTTACTGGCCTTTGTGACAGATAAGTGTTGTCAGAATATTTGGTGGCTGTGTGTCAGGGGCTTGGGCCTCTCTGTTATGCAATTGTGTCACTCTGAGGCTCTCTACTTGAGGGAATGTTTGTTTCCATTTTTAATCAACCTGGGACAAGGCGAATCCTGCCTCTCAAAGGGTTGTAGAAAATACTTCCTTGGTCTGTTGGGCCATGGAGTACCTCTGAAGATGTCTGCACATTCCTTAAGCAGCTGGCTCTGAGGAAGGTCTCAGCTTTAAGACACTGAGGCTGGTTTCCTTTTCTTTTCCCACAAACCTTCAGTATAATCTTGTTAAAGTTCTGTCCAGGGTACCGTTGTGCTTTGAGGAACGAAGGGGGACCTGCCTGTGTTCCAAAGGTGGAGTAGTCGTGTGCTCTGCCTGAAGATGAAGCAGGGGTGTCTCAGTGGTCAGCATGCGACAGACAGTGTCCCTAGCACAGCGGCAATCCCTAAAGTGGTCAGCAGCGGATGCAGCACTGAGGCAGTCAGGTGAAGATGCAGGCTAGGAAGGGGGTGAGGGATGAGTAAGGAGAACACATGAAACCACTGTCAGGAATTTGAGGAATTTACTGGGAGTAATTTAGGGTACTTTTGCCACCATATCCAAATACAGCCAATAATATGGATATTAAAATGGAGTGCAATATTACTGTCATTTTCATTTTAGAAATGTGGAAATGGAGGCATCAGGCACATTACTTGGAGTTGCCTACTACATACTCCAAATTTCTTTAAAACCTCATTGTAAGATGAAGTAAATGTCATACACTATTCCATAATATAGACAGCTGCATTTTAATAGTAAGCTATTATGATTAATATCAACATGGTCATGAAACAATTTCTCCTCAAACATTTTTAGTTAAACTTGAGAAGCTGAAAAAGGAAGGCTGCTTCTTGTGTGGCTTTCTATGCTGCCTGCTTCCCTTTCAAACATAGATTCAAACTGCTGCCTACCTACTTGGAAAGTGTTTAGTGTAGTTTTTTTTGTTTCTTCAAAGAAAAGGGAAGGCAAAAGGAAAAGAGAAAAGGGAAAGAAATCCAGAGAAAAGAATGGGGGGAACTTAGCTTCTCAGGGGTAAAGACAGACAGACTTCAATCCCAACATCAGGGAGAGTAGGGGAAACCAACTTGGCCCAGAGCTGTCACTCTCGCTCTCCTCTTGCTTGAACAGCTGCCAATACCCAGAGTCAGCCTGTCCTGTTGCCCACTGAGCTTCAGGCTTGCAGAGAAATACTCACATCTGTGCCAAAAACCTTTTGCCCAGCTCTGACACTTCCGCTTTGAATCCCATGGCTCTTCTTGATTGTACCACTGAAGGTCCAGGACACAAAAAGCCCTCAGGTCATTTGATTTAGGATTTGAACAATGGAGAGATGATCATGATCAGAAGAAAAATTCTTTATACTTCACAAAGGCAGAAATAAAAATCCAGTTTGAAATTGACTTTTGAGCCTGGAGAATAATGGGAAACTTCACCCATGTTAACTTGTCTTTTGCAAACAAAGTGTCTTTCTGTGTTAGAATTTTCAAGAGCCTAATTCTGCTAATCATAATGTATTTGCACATGCAATTAAAATTTCCAAATTTTTCTTTTTTAAGGAACTACTCCAAAAAGCTTTCCTTTTCTTTGAGAGTACACCACTGAGTTTTGTAAAGTACCAGACTTTTGCTTGAGTTCCATAAAATGTTGTCTGAGCTTCTACACAGCATGACAGATGATCAAAACCACTTTTTCCCTGGATTTTGTGTCTGTTCAGTTAGTTATCACTCCTAGCTTACTGCCGTCTACAAATCTTAAAAACATGCCCTTTATCTCTCTTCCTCCTGGTTATTAATTAAAATTTTAACAAGACAGGGCTAAGAGCCAACCCACTATAGGGCTTTATTAAAGACTACTGTACTTTGCAGTTTGATGTTTATTAACATTCTTTGGGCACCTAGCTACAATATAACTCAATTTTCTGTGAAAAACTATTAATCATCCTATTTTTTCCTTGTCTTTAATATGAGATAAATTTTATACCACTGTTTCTCAAACCATCTGTTGTGAGGGACAGTTTTGCTTTTTAATTTCCAATTGTCAGAGACCAATACTTTTGTAAAATATAATTAAAAACAAACATAAAAATAAACTTATTAGAAAAATGAAATAAAAGAGAAATGAAATAAGAATAATTTTATTATTAGATTTAACAGATCAAATATTATTTCAATACTCAGATCAAATGTGCAATAAGACAGGGTTGCAAAAAATGCACACTTTTTTTATTAAAATCATTTATATAAGTAATTTATATAAAAATAATATTACAGTTGCAACTTTCTGTTGTTTCTCAACTATGACCAAACAGAGGTTACAAGTAAAGTAGCAATCCCAATACTAAACTGCTATATGTGCATTTTGAATCAATCATGTGTATGTCAATGAAGTTTTTAATGTGACAGATTTGCATTTTGGTTGTTAATTTATATAATCTAGGTTGGATAAATGACAATGCCAATCATAGGGGATAATGTTGATCCTAAATGTTAGTGTGTTGATTTCATAACACTCAATGGAGAAGCCAGTCTCAGAGAGGCATGGTGCTAGACTGGAAGACAAGAATTTGAAATAATTACAGTAAGCTGATGGAATTCACTTTTATCTATTTTTATAAAGCAAGTGATTTTGTATTTTTAAAATTTATCTTCAATTCTTCATCAATAGCTACTTTTAATCATTAACCTTATAAATTTAATTATATTTCAATTATATTTTAATAGAAAGAATGGATTTCATGTTTTTTCTGGTGTGGATCTTTGATAAGAAAATAAAATTCAAAATATTCTGTCAAAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>ATATTATTTAAAAATAAAATCGAACAAATACCTATGCATACATTTGAGGACAGACTTAAGTGAAGGACAATAGCCCTCAAAAATAAGCTTCTAGTTGTGATTCTGTCTTCTCTTTATAACATGACTAGCATTTATTTTTTTCAGCAGAATAATCACACTATGAATTATTTCCTATTGAAAAATCTCCTTTTCCTAAAACTTCATTTGAACACCATTGTTTCTACATACTTCTCTTTGTTTTCATGCAACTCTTCTTTAGAGGCAATGTGGACTTTAGATCTCTGGGAAAGGGCATACCGGAGGATTTTACTGGCCTTTGTGACAGATAAGTGTTGTCAGAATATTTGGTGGCTGTGTGTCAGGGGCTTGGGCCTCTCTGTTATGCAATTGTGTCACTCTGAGGCTCTCTACTTGAGGGAATGTTTGTTTCCATTTTTAATCAACCTGGGACAAGGCGAATCCTGCCTCTCAAAGGGTTGTAGAAAATACTTCCTTGGTCTGTTGGGCCATGGAGTACCTCTGAAGATGTCTGCACATTCCTTAAGCAGCTGGCTCTGAGGAAGGTCTCAGCTTTAAGACACTGAGGCTGGTTTCCTTTTCTTTTCCCACAAACCTTCAGTATAATCTTGTTAAAGTTCTGTCCAGGGTACCGTTGTGCTTTGAGGAACGAAGGGGGACCTGCCTGTGTTCCAAAGGTGGAGTAGTCGTGTGCTCTGCCTGAAGATGAAGCAGGGGTGTCTCAGTGGTCAGCATGCGACAGACAGTGTCCCTAGCACAGCGGCAATCCCTAAAGTGGTCAGCAGCGGATGCAGCACTGAGGCAGTCAGGTGAAGATGCAGGCTAGGAAGGGGGTGAGGGATGAGTAAGGAGAACACATGAAACCACTGTCAGGAATTTGAGGAATTTACTGGGAGTAATTTAGGGTACTTTTGCCACCATATCCAAATACAGCCAATAATATGGATATTAAAATGGAGTGCAATATTACTGTCATTTTCATTTTAGAAATGTGGAAATGGAGGCATCAGGCACATTACTTGGAGTTGCCTACTACATACTCCAAATTTCTTTAAAACCTCATTGTAAGATGAAGTAAATGTCATACACTATTCCATAATATAGACAGCTGCATTTTAATAGTAAGCTATTATGATTAATATCAACATGGTCATGAAACAATTTCTCCTCAAACATTTTTAGTTAAACTTGAGAAGCTGAAAAAGGAAGGCTGCTTCTTGTGTGGCTTTCTATGCTGCCTGCTTCCCTTTCAAACATAGATTCAAACTGCTGCCTACCTACTTGGAAAGTGTTTAGTGTAGTTTTTTTTGTTTCTTCAAAGAAAAGGGAAGGCAAAAGGAAAAGAGAAAAGGGAAAGAAATCCAGAGAAAAGAATGGGGGGAACTTAGCTTCTCAGGGGTAAAGACAGACAGACTTCAATCCCAACATCAGGGAGAGTAGGGGAAACCAACTTGGCCCAGAGCTGTCACTCTCGCTCTCCTCTTGCTTGAACAGCTGCCAATACCCAGAGTCAGCCTGTCCTGTTGCCCACTGAGCTTCAGGCTTGCAGAGAAATACTCACATCTGTGCCAAAAACCTTTTGCCCAGCTCTGACACTTCCGCTTTGAATCCCATGGCTCTTCTTGATTGTACCACTGAAGGTCCAGGACACAAAAAGCCCTCAGGTCATTTGATTTAGGATTTGAACAATGGAGAGATGATCATGATCAGAAGAAAAATTCTTTATACTTCACAAAGGCAGAAATAAAAATCCAGTTTGAAATTGACTTTTGAGCCTGGAGAATAATGGGAAACTTCACCCATGTTAACTTGTCTTTTGCAAACAAAGTGTCTTTCTGTGTTAGAATTTTCAAGAGCCTAATTCTGCTAATCATAATGTATTTGCACATGCAATTAAAATTTCCAAATTTTTCTTTTTTAAGGAACTACTCCAAAAAGCTTTCCTTTTCTTTGAGAGTACACCACTGAGTTTTGTAAAGTACCAGACTTTTGCTTGAGTTCCATAAAATGTTGTCTGAGCTTCTACACAGCATGACAGATGATCAAAACCACTTTTTCCCTGGATTTTGTGTCTGTTCAGTTAGTTATCACTCCTAGCTTACTGCCGTCTACAAATCTTAAAAACATGCCCTTTATCTCTCTTCCTCCTGGTTATTAATTAAAATTTTAACAAGACAGGGCTAAGAGCCAACCCACTATAGGGCTTTATTAAAGACTACTGTACTTTGCAGTTTGATGTTTATTAACATTCTTTGGGCACCTAGCTACAATATAACTCAATTTTCTGTGAAAAACTATTAATCATCCTATTTTTTCCTTGTCTTTAATATGAGATAAATTTTATACCACTGTTTCTCAAACCATCTGTTGTGAGGGACAGTTTTGCTTTTTAATTTCCAATTGTCAGAGACCAATACTTTTGTAAAATATAATTAAAAACAAACATAAAAATAAACTTATTAGAAAAATGAAATAAAAGAGAAATGAAATAAGAATAATTTTATTATTAGATTTAACAGATCAAATATTATTTCAATACTCAGATCAAATGTGCAATAAGACAGGGTTGCAAAAAATGCACACTTTTTTTATTAAAATCATTTATATAAGTAATTTATATAAAAATAATATTACAGTTGCAACTTTCTGTTGTTTCTCAACTATGACCAAACAGAGGTTACAAGTAAAGTAGCAATCCCAATACTAAACTGCTATATGTGCATTTTGAATCAATCATGTGTATGTCAATGAAGTTTTTAATGTGACAGATTTGCATTTTGGTTGTTAATTTATATAATCTAGGTTGGATAAATGACAATGCCAATCATAGGGGATAATGTTGATCCTAAATGTTAGTGTGTTGATTTCATAACACTCAATGGAGAAGCCAGTCTCAGAGAGGCATGGTGCTAGACTGGAAGACAAGAATTTGAAATAATTACAGTAAGCTGATGGAATTCACTTTTATCTATTTTTATAAAGCAAGTGATTTTGTATTTTTAAAATTTATCTTCAATTCTTCATCAATAGCTACTTTTAATCATTAACCTTATAAATTTAATTATATTTCAATTATATTTTAATAGAAAGAATGGATTTCATGTTTTTTCTGGTGTGGATCTTTGATAAGAAAATAAAATTCAAAATATTCTGTCAAAAAAAAAAAAAAAAAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG024080]]
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[[Category:Intergenic]][[Category:NONHSAG024080]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:39, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT059717

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3191 nt

Genomic location

chr18-:65149028..65152203

Exon number

1

Exons

65149028..65152203

Genome context

Sequence
000001 ATATTATTTA AAAATAAAAT CGAACAAATA CCTATGCATA CATTTGAGGA CAGACTTAAG TGAAGGACAA TAGCCCTCAA 000080
000081 AAATAAGCTT CTAGTTGTGA TTCTGTCTTC TCTTTATAAC ATGACTAGCA TTTATTTTTT TCAGCAGAAT AATCACACTA 000160
000161 TGAATTATTT CCTATTGAAA AATCTCCTTT TCCTAAAACT TCATTTGAAC ACCATTGTTT CTACATACTT CTCTTTGTTT 000240
000241 TCATGCAACT CTTCTTTAGA GGCAATGTGG ACTTTAGATC TCTGGGAAAG GGCATACCGG AGGATTTTAC TGGCCTTTGT 000320
000321 GACAGATAAG TGTTGTCAGA ATATTTGGTG GCTGTGTGTC AGGGGCTTGG GCCTCTCTGT TATGCAATTG TGTCACTCTG 000400
000401 AGGCTCTCTA CTTGAGGGAA TGTTTGTTTC CATTTTTAAT CAACCTGGGA CAAGGCGAAT CCTGCCTCTC AAAGGGTTGT 000480
000481 AGAAAATACT TCCTTGGTCT GTTGGGCCAT GGAGTACCTC TGAAGATGTC TGCACATTCC TTAAGCAGCT GGCTCTGAGG 000560
000561 AAGGTCTCAG CTTTAAGACA CTGAGGCTGG TTTCCTTTTC TTTTCCCACA AACCTTCAGT ATAATCTTGT TAAAGTTCTG 000640
000641 TCCAGGGTAC CGTTGTGCTT TGAGGAACGA AGGGGGACCT GCCTGTGTTC CAAAGGTGGA GTAGTCGTGT GCTCTGCCTG 000720
000721 AAGATGAAGC AGGGGTGTCT CAGTGGTCAG CATGCGACAG ACAGTGTCCC TAGCACAGCG GCAATCCCTA AAGTGGTCAG 000800
000801 CAGCGGATGC AGCACTGAGG CAGTCAGGTG AAGATGCAGG CTAGGAAGGG GGTGAGGGAT GAGTAAGGAG AACACATGAA 000880
000881 ACCACTGTCA GGAATTTGAG GAATTTACTG GGAGTAATTT AGGGTACTTT TGCCACCATA TCCAAATACA GCCAATAATA 000960
000961 TGGATATTAA AATGGAGTGC AATATTACTG TCATTTTCAT TTTAGAAATG TGGAAATGGA GGCATCAGGC ACATTACTTG 001040
001041 GAGTTGCCTA CTACATACTC CAAATTTCTT TAAAACCTCA TTGTAAGATG AAGTAAATGT CATACACTAT TCCATAATAT 001120
001121 AGACAGCTGC ATTTTAATAG TAAGCTATTA TGATTAATAT CAACATGGTC ATGAAACAAT TTCTCCTCAA ACATTTTTAG 001200
001201 TTAAACTTGA GAAGCTGAAA AAGGAAGGCT GCTTCTTGTG TGGCTTTCTA TGCTGCCTGC TTCCCTTTCA AACATAGATT 001280
001281 CAAACTGCTG CCTACCTACT TGGAAAGTGT TTAGTGTAGT TTTTTTTGTT TCTTCAAAGA AAAGGGAAGG CAAAAGGAAA 001360
001361 AGAGAAAAGG GAAAGAAATC CAGAGAAAAG AATGGGGGGA ACTTAGCTTC TCAGGGGTAA AGACAGACAG ACTTCAATCC 001440
001441 CAACATCAGG GAGAGTAGGG GAAACCAACT TGGCCCAGAG CTGTCACTCT CGCTCTCCTC TTGCTTGAAC AGCTGCCAAT 001520
001521 ACCCAGAGTC AGCCTGTCCT GTTGCCCACT GAGCTTCAGG CTTGCAGAGA AATACTCACA TCTGTGCCAA AAACCTTTTG 001600
001601 CCCAGCTCTG ACACTTCCGC TTTGAATCCC ATGGCTCTTC TTGATTGTAC CACTGAAGGT CCAGGACACA AAAAGCCCTC 001680
001681 AGGTCATTTG ATTTAGGATT TGAACAATGG AGAGATGATC ATGATCAGAA GAAAAATTCT TTATACTTCA CAAAGGCAGA 001760
001761 AATAAAAATC CAGTTTGAAA TTGACTTTTG AGCCTGGAGA ATAATGGGAA ACTTCACCCA TGTTAACTTG TCTTTTGCAA 001840
001841 ACAAAGTGTC TTTCTGTGTT AGAATTTTCA AGAGCCTAAT TCTGCTAATC ATAATGTATT TGCACATGCA ATTAAAATTT 001920
001921 CCAAATTTTT CTTTTTTAAG GAACTACTCC AAAAAGCTTT CCTTTTCTTT GAGAGTACAC CACTGAGTTT TGTAAAGTAC 002000
002001 CAGACTTTTG CTTGAGTTCC ATAAAATGTT GTCTGAGCTT CTACACAGCA TGACAGATGA TCAAAACCAC TTTTTCCCTG 002080
002081 GATTTTGTGT CTGTTCAGTT AGTTATCACT CCTAGCTTAC TGCCGTCTAC AAATCTTAAA AACATGCCCT TTATCTCTCT 002160
002161 TCCTCCTGGT TATTAATTAA AATTTTAACA AGACAGGGCT AAGAGCCAAC CCACTATAGG GCTTTATTAA AGACTACTGT 002240
002241 ACTTTGCAGT TTGATGTTTA TTAACATTCT TTGGGCACCT AGCTACAATA TAACTCAATT TTCTGTGAAA AACTATTAAT 002320
002321 CATCCTATTT TTTCCTTGTC TTTAATATGA GATAAATTTT ATACCACTGT TTCTCAAACC ATCTGTTGTG AGGGACAGTT 002400
002401 TTGCTTTTTA ATTTCCAATT GTCAGAGACC AATACTTTTG TAAAATATAA TTAAAAACAA ACATAAAAAT AAACTTATTA 002480
002481 GAAAAATGAA ATAAAAGAGA AATGAAATAA GAATAATTTT ATTATTAGAT TTAACAGATC AAATATTATT TCAATACTCA 002560
002561 GATCAAATGT GCAATAAGAC AGGGTTGCAA AAAATGCACA CTTTTTTTAT TAAAATCATT TATATAAGTA ATTTATATAA 002640
002641 AAATAATATT ACAGTTGCAA CTTTCTGTTG TTTCTCAACT ATGACCAAAC AGAGGTTACA AGTAAAGTAG CAATCCCAAT 002720
002721 ACTAAACTGC TATATGTGCA TTTTGAATCA ATCATGTGTA TGTCAATGAA GTTTTTAATG TGACAGATTT GCATTTTGGT 002800
002801 TGTTAATTTA TATAATCTAG GTTGGATAAA TGACAATGCC AATCATAGGG GATAATGTTG ATCCTAAATG TTAGTGTGTT 002880
002881 GATTTCATAA CACTCAATGG AGAAGCCAGT CTCAGAGAGG CATGGTGCTA GACTGGAAGA CAAGAATTTG AAATAATTAC 002960
002961 AGTAAGCTGA TGGAATTCAC TTTTATCTAT TTTTATAAAG CAAGTGATTT TGTATTTTTA AAATTTATCT TCAATTCTTC 003040
003041 ATCAATAGCT ACTTTTAATC ATTAACCTTA TAAATTTAAT TATATTTCAA TTATATTTTA ATAGAAAGAA TGGATTTCAT 003120
003121 GTTTTTTCTG GTGTGGATCT TTGATAAGAA AATAAAATTC AAAATATTCT GTCAAAAAAA AAAAAAAAAA A
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Predicted Small Protein

Name NONHSAT059717_smProtein_959:1072
Length 38
Molecular weight 4630.4763
Aromaticity 0.162162162162
Instability index 65.1945945946
Isoelectric point 6.69866943359
Runs 8
Runs residual 0.03644929333
Runs probability 0.00280427486309
Amino acid sequence MDIKMECNITVIFILEMWKWRHQAHYLELPTTYSKFL
Secondary structure LLEEEELLEEHHHHHHHHHHHHHHHHHHLLLHHHLLL
PRMN -
PiMo -