Difference between revisions of "NONHSAT008339"

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sequence = <dnaseq>GCGCAGAGCGCGTGCCAGGGCGGGGGATGGCGAGGGCGCGCCAATGGAGGGGGCGGGGCTCAGCAACCTCGCGGCGCGGAAGGGTTTCGTTGCTAGGGAGATGGGCTGAGCCGGGCGGGCATCGCGCCAGACCTGCTACTCTGGATAATCCACTCTCCTGGATAATCCACTACCCTGGATAATCGGCTGCCCGCTTTTGCGCATGTTAGGGAGTTGACGGCCTGTAGCATTCTGATGCAGCAAAATATTTCGCAGGGTCTGTCATAGGGATCTCCGGTGAGAGGAGGTTCCCTTCGAAGGCAGAACTGGAAACCTTGCTGCTAacttggtagggttgttgagataattacatgagatggcatatgaagggcggcttagttcaatacctggcatgtagtaggtgttcagtGGGCGTAGTTACCGGATTGATTCAGATAGTCTGAACGCCAGTGTCTCTTGAAAGAAATAAACTggccgggcgtggtgactgtaatcccagcactttgggaggccgaggtgggcgaatcacttggggtcaggagtttgagaccagcctggccagcgtggtgaaaccccgtttctactaaaaaaaaaaaaaaaaatacaaaaattagccgggcatgggggcgggcgcctgcaatcccagctgcttgggtggctgggcgggctcctgcaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccccggggtcgggggcggaggcggaggttgcagtgggccgagatcacgccattttctgggcgagagagcgagactccgtctcaaaaaaaaaaaaaaaaaCCATGAAAGAAATAAGCTCAGTGAAGGCGGGCATTCTGCCTGGCTAACGCAGGTCGCTCCTTGCCGTGCCTGGAACATTACTGTAAGTGCTCAGCAAACTACTTTAAGGTAGGAATAAAATCTGCAAGGTTGCTTTTGTTTAAATTGGATAACCTTTTGTGTTCCAAGTCTTTGGAGTAATTTTGTGTTCCAAGTCTTTGGAATAATTGTGTCCTTAATTATTATACTAGTCACTGTTAAATTTTGAAACTCCAGTGCGTCCCATGAAGGTAATGATACAAAACATTTCCAGCTGGGATTGTTCCAGGGAATCCAGACTAATCAATTATCTGGGCTCATTATATCTATGGATCTTTATTTTTCACCTCTTTCCTTATGTTTTTCTTAATCCTTCTAGCTGATAGTGATCACTCCCTTTAAAACTGTCATTCTTAAAATCAGAACAACATAGTTTATCATTTACTTATTATTTTCTTCATGTGATTGTTCTCCTTAATTAAGAATAAAATCATTGAAGGAAAGACCTTAATTTTTTTTTTTTTGTACCCTTCAGGGTGTTGAAAGCAGCAGGGGCCTagaagacattaaaccgataccacagaaatacaaaggatcattagagactattatgaacaactatatgccaacaaattggaaaccaaatggaaatggataaattcctgaacagatacaacttaccaaaattggaccaagaagaaatagaaaacctgaaaagaccaactatgagtaatgagattaaatcagtaatatagagtctcccatcaaagaaaagtccaggccctgatggcttcactgctgaattctactgaacagttaaagaagaactcataccagttctcaaactcatcctgtgagggcagcattaccctgataccaaaactagatatggacacaagaaaaaaaatctataggccagtatccctgatgaacatagatgcaagaatcctcaacaagaccaggtgtggtggttcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggaatttgagaccagcctggccaacatggcaaaaccctgtctgtactaaaaatacaaaaattagccgggcaaggtggcgtgtgcctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaacctggagggaggaggggcagaagttgcagcgagctcagatcgtcccactgcactccagcctgggtgacagagtga</dnaseq>|
 
sequence = <dnaseq>GCGCAGAGCGCGTGCCAGGGCGGGGGATGGCGAGGGCGCGCCAATGGAGGGGGCGGGGCTCAGCAACCTCGCGGCGCGGAAGGGTTTCGTTGCTAGGGAGATGGGCTGAGCCGGGCGGGCATCGCGCCAGACCTGCTACTCTGGATAATCCACTCTCCTGGATAATCCACTACCCTGGATAATCGGCTGCCCGCTTTTGCGCATGTTAGGGAGTTGACGGCCTGTAGCATTCTGATGCAGCAAAATATTTCGCAGGGTCTGTCATAGGGATCTCCGGTGAGAGGAGGTTCCCTTCGAAGGCAGAACTGGAAACCTTGCTGCTAacttggtagggttgttgagataattacatgagatggcatatgaagggcggcttagttcaatacctggcatgtagtaggtgttcagtGGGCGTAGTTACCGGATTGATTCAGATAGTCTGAACGCCAGTGTCTCTTGAAAGAAATAAACTggccgggcgtggtgactgtaatcccagcactttgggaggccgaggtgggcgaatcacttggggtcaggagtttgagaccagcctggccagcgtggtgaaaccccgtttctactaaaaaaaaaaaaaaaaatacaaaaattagccgggcatgggggcgggcgcctgcaatcccagctgcttgggtggctgggcgggctcctgcaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccccggggtcgggggcggaggcggaggttgcagtgggccgagatcacgccattttctgggcgagagagcgagactccgtctcaaaaaaaaaaaaaaaaaCCATGAAAGAAATAAGCTCAGTGAAGGCGGGCATTCTGCCTGGCTAACGCAGGTCGCTCCTTGCCGTGCCTGGAACATTACTGTAAGTGCTCAGCAAACTACTTTAAGGTAGGAATAAAATCTGCAAGGTTGCTTTTGTTTAAATTGGATAACCTTTTGTGTTCCAAGTCTTTGGAGTAATTTTGTGTTCCAAGTCTTTGGAATAATTGTGTCCTTAATTATTATACTAGTCACTGTTAAATTTTGAAACTCCAGTGCGTCCCATGAAGGTAATGATACAAAACATTTCCAGCTGGGATTGTTCCAGGGAATCCAGACTAATCAATTATCTGGGCTCATTATATCTATGGATCTTTATTTTTCACCTCTTTCCTTATGTTTTTCTTAATCCTTCTAGCTGATAGTGATCACTCCCTTTAAAACTGTCATTCTTAAAATCAGAACAACATAGTTTATCATTTACTTATTATTTTCTTCATGTGATTGTTCTCCTTAATTAAGAATAAAATCATTGAAGGAAAGACCTTAATTTTTTTTTTTTTGTACCCTTCAGGGTGTTGAAAGCAGCAGGGGCCTagaagacattaaaccgataccacagaaatacaaaggatcattagagactattatgaacaactatatgccaacaaattggaaaccaaatggaaatggataaattcctgaacagatacaacttaccaaaattggaccaagaagaaatagaaaacctgaaaagaccaactatgagtaatgagattaaatcagtaatatagagtctcccatcaaagaaaagtccaggccctgatggcttcactgctgaattctactgaacagttaaagaagaactcataccagttctcaaactcatcctgtgagggcagcattaccctgataccaaaactagatatggacacaagaaaaaaaatctataggccagtatccctgatgaacatagatgcaagaatcctcaacaagaccaggtgtggtggttcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggaatttgagaccagcctggccaacatggcaaaaccctgtctgtactaaaaatacaaaaattagccgggcaaggtggcgtgtgcctgtaatcctagctacttgggaggctgaggcaggagaattgcttgaacctggagggaggaggggcagaagttgcagcgagctcagatcgtcccactgcactccagcctgggtgacagagtga</dnaseq>|
 
}}
 
}}
[[Category:Antisense]][[Category:NONHSAG003677]]
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[[Category:Antisense]][[Category:NONHSAG003677]][[Category:Transcripts]]

Latest revision as of 19:48, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT008339

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2069 nt

Genomic location

chr1-:182806370..182808438

Exon number

1

Exons

182806370..182808438

Genome context

Sequence
000001 GCGCAGAGCG CGTGCCAGGG CGGGGGATGG CGAGGGCGCG CCAATGGAGG GGGCGGGGCT CAGCAACCTC GCGGCGCGGA 000080
000081 AGGGTTTCGT TGCTAGGGAG ATGGGCTGAG CCGGGCGGGC ATCGCGCCAG ACCTGCTACT CTGGATAATC CACTCTCCTG 000160
000161 GATAATCCAC TACCCTGGAT AATCGGCTGC CCGCTTTTGC GCATGTTAGG GAGTTGACGG CCTGTAGCAT TCTGATGCAG 000240
000241 CAAAATATTT CGCAGGGTCT GTCATAGGGA TCTCCGGTGA GAGGAGGTTC CCTTCGAAGG CAGAACTGGA AACCTTGCTG 000320
000321 CTAacttggt agggttgttg agataattac atgagatggc atatgaaggg cggcttagtt caatacctgg catgtagtag 000400
000401 gtgttcagtG GGCGTAGTTA CCGGATTGAT TCAGATAGTC TGAACGCCAG TGTCTCTTGA AAGAAATAAA CTggccgggc 000480
000481 gtggtgactg taatcccagc actttgggag gccgaggtgg gcgaatcact tggggtcagg agtttgagac cagcctggcc 000560
000561 agcgtggtga aaccccgttt ctactaaaaa aaaaaaaaaa aatacaaaaa ttagccgggc atgggggcgg gcgcctgcaa 000640
000641 tcccagctgc ttgggtggct gggcgggctc ctgcaatccc agctactcgg gaggctgagg caggagaatc gcttgaaccc 000720
000721 cggggtcggg ggcggaggcg gaggttgcag tgggccgaga tcacgccatt ttctgggcga gagagcgaga ctccgtctca 000800
000801 aaaaaaaaaa aaaaaaCCAT GAAAGAAATA AGCTCAGTGA AGGCGGGCAT TCTGCCTGGC TAACGCAGGT CGCTCCTTGC 000880
000881 CGTGCCTGGA ACATTACTGT AAGTGCTCAG CAAACTACTT TAAGGTAGGA ATAAAATCTG CAAGGTTGCT TTTGTTTAAA 000960
000961 TTGGATAACC TTTTGTGTTC CAAGTCTTTG GAGTAATTTT GTGTTCCAAG TCTTTGGAAT AATTGTGTCC TTAATTATTA 001040
001041 TACTAGTCAC TGTTAAATTT TGAAACTCCA GTGCGTCCCA TGAAGGTAAT GATACAAAAC ATTTCCAGCT GGGATTGTTC 001120
001121 CAGGGAATCC AGACTAATCA ATTATCTGGG CTCATTATAT CTATGGATCT TTATTTTTCA CCTCTTTCCT TATGTTTTTC 001200
001201 TTAATCCTTC TAGCTGATAG TGATCACTCC CTTTAAAACT GTCATTCTTA AAATCAGAAC AACATAGTTT ATCATTTACT 001280
001281 TATTATTTTC TTCATGTGAT TGTTCTCCTT AATTAAGAAT AAAATCATTG AAGGAAAGAC CTTAATTTTT TTTTTTTTGT 001360
001361 ACCCTTCAGG GTGTTGAAAG CAGCAGGGGC CTagaagaca ttaaaccgat accacagaaa tacaaaggat cattagagac 001440
001441 tattatgaac aactatatgc caacaaattg gaaaccaaat ggaaatggat aaattcctga acagatacaa cttaccaaaa 001520
001521 ttggaccaag aagaaataga aaacctgaaa agaccaacta tgagtaatga gattaaatca gtaatataga gtctcccatc 001600
001601 aaagaaaagt ccaggccctg atggcttcac tgctgaattc tactgaacag ttaaagaaga actcatacca gttctcaaac 001680
001681 tcatcctgtg agggcagcat taccctgata ccaaaactag atatggacac aagaaaaaaa atctataggc cagtatccct 001760
001761 gatgaacata gatgcaagaa tcctcaacaa gaccaggtgt ggtggttcat gcctgtaatc ccagcacttt gggaggccaa 001840
001841 ggcaggtgga tcacctgagg tcaggaattt gagaccagcc tggccaacat ggcaaaaccc tgtctgtact aaaaatacaa 001920
001921 aaattagccg ggcaaggtgg cgtgtgcctg taatcctagc tacttgggag gctgaggcag gagaattgct tgaacctgga 002000
002001 gggaggaggg gcagaagttg cagcgagctc agatcgtccc actgcactcc agcctgggtg acagagtga
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Predicted Small Protein

Name NONHSAT008339_smProtein_1808:2068
Length 87
Molecular weight 9604.9132
Aromaticity 0.0697674418605
Instability index 89.9476744186
Isoelectric point 9.49041748047
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0490686765196
Amino acid sequence MPVIPALWEAKAGGSPEVRNLRPAWPTWQNPVCTKNTKISRARWRVPVILATWEAEAGEL
LEPGGRRGRSCSELRSSHCTPAWVTE
Secondary structure LLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELEEEELHHHHHHHH
HLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -