Difference between revisions of "ENST00000521996.1"
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sequence = <dnaseq>GTTCCAGCACCTCTGATATTACCTCACATGGCAAGAGGGCTTTGAAGATGTGATTGAGTCAAGGATCTTGAATGGGGAGATTATCCTGAATTATTCAGCTGGACCCAGTGTAATCACAAAGGTTTTTCAAAGATGGAAGAGAGGCAGAAGAGCCAGAAAAGGATATGTGACAATGGAGTCAGTGTCAGAGTTGGAGTGACGTGATGTGAGAAGGATTCAACCTGCTGTTTCTGGCTTTGAGGATGAAAGAAGGGGCCATGAGCCAAGCAATACAGGTGGCTTCTTTCAAGAAGTTGGAAAAGTGGTAATATTTTATGTTATTTTGGTTTGATTTTTGTTTGTGGCATATGGCTCTGCTGTCCTGTGACTCTAAGTAGAAGAGAAAATAGTGCCAATAATTCTTCATGGAGATGCACCTCTCTCAAGTCTTGAACAATGTTTGAGGAAAAGTGCTTTCAGCTGGGCTGATGAGAACACCTTGGCACTCTTTCCTGCAATGGGCACTGATTGAGGGTCTTCCTGGTGTGGCATCATCAAATCCCTGTTGCTCAAACCCACTAATTAGCTCATTCTTATCTACAAGTAGCAGGGGCCCTAAAGCTCTCTGAGAAGATCTCATACTGTGTCTCCTACATTTCATCTTCTATAATCTCTTATTCTTAGAGACAGAAAGATGGTTAAAAGACATCACTTCATTTCTTTCTCTGGATTTGGAAAGAGTTATATATTGGGATTATGCTGTTAGTTTACACTTGCATTGTTTAAATTAGAGGAAAGGTTATTTTGTGCAGAACAAATAAAAATTACTCTTTAACTACCTTTCAGAATATCCCAACTTTTAACATAAGCTGTTTTGTAAAGGCTGGTTGTAGTGACTTGCTTCATAATAGACTATTAAAATAAGATGCATTGAAA</dnaseq>| | sequence = <dnaseq>GTTCCAGCACCTCTGATATTACCTCACATGGCAAGAGGGCTTTGAAGATGTGATTGAGTCAAGGATCTTGAATGGGGAGATTATCCTGAATTATTCAGCTGGACCCAGTGTAATCACAAAGGTTTTTCAAAGATGGAAGAGAGGCAGAAGAGCCAGAAAAGGATATGTGACAATGGAGTCAGTGTCAGAGTTGGAGTGACGTGATGTGAGAAGGATTCAACCTGCTGTTTCTGGCTTTGAGGATGAAAGAAGGGGCCATGAGCCAAGCAATACAGGTGGCTTCTTTCAAGAAGTTGGAAAAGTGGTAATATTTTATGTTATTTTGGTTTGATTTTTGTTTGTGGCATATGGCTCTGCTGTCCTGTGACTCTAAGTAGAAGAGAAAATAGTGCCAATAATTCTTCATGGAGATGCACCTCTCTCAAGTCTTGAACAATGTTTGAGGAAAAGTGCTTTCAGCTGGGCTGATGAGAACACCTTGGCACTCTTTCCTGCAATGGGCACTGATTGAGGGTCTTCCTGGTGTGGCATCATCAAATCCCTGTTGCTCAAACCCACTAATTAGCTCATTCTTATCTACAAGTAGCAGGGGCCCTAAAGCTCTCTGAGAAGATCTCATACTGTGTCTCCTACATTTCATCTTCTATAATCTCTTATTCTTAGAGACAGAAAGATGGTTAAAAGACATCACTTCATTTCTTTCTCTGGATTTGGAAAGAGTTATATATTGGGATTATGCTGTTAGTTTACACTTGCATTGTTTAAATTAGAGGAAAGGTTATTTTGTGCAGAACAAATAAAAATTACTCTTTAACTACCTTTCAGAATATCCCAACTTTTAACATAAGCTGTTTTGTAAAGGCTGGTTGTAGTGACTTGCTTCATAATAGACTATTAAAATAAGATGCATTGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-NBN-1]] | + | [[Category:Intergenic]][[Category:lnc-NBN-1]][[Category:NONHSAG050699]][[Category:ENSG00000251136.4]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:00, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000521996.1 |
| Source |
Gencode19 |
| Same with |
lnc-NBN-1:5,NONHSAT127623 |
| Classification |
intergenic |
| Length |
915 nt |
| Genomic location |
chr8-:90733132..90737158 |
| Exon number |
3 |
| Exons |
90733132..90733602,90734243..90734384,90736857..90737158 |
| Genome context |
|
| Sequence |
000001 GTTCCAGCAC CTCTGATATT ACCTCACATG GCAAGAGGGC TTTGAAGATG TGATTGAGTC AAGGATCTTG AATGGGGAGA 000080
000081 TTATCCTGAA TTATTCAGCT GGACCCAGTG TAATCACAAA GGTTTTTCAA AGATGGAAGA GAGGCAGAAG AGCCAGAAAA 000160 000161 GGATATGTGA CAATGGAGTC AGTGTCAGAG TTGGAGTGAC GTGATGTGAG AAGGATTCAA CCTGCTGTTT CTGGCTTTGA 000240 000241 GGATGAAAGA AGGGGCCATG AGCCAAGCAA TACAGGTGGC TTCTTTCAAG AAGTTGGAAA AGTGGTAATA TTTTATGTTA 000320 000321 TTTTGGTTTG ATTTTTGTTT GTGGCATATG GCTCTGCTGT CCTGTGACTC TAAGTAGAAG AGAAAATAGT GCCAATAATT 000400 000401 CTTCATGGAG ATGCACCTCT CTCAAGTCTT GAACAATGTT TGAGGAAAAG TGCTTTCAGC TGGGCTGATG AGAACACCTT 000480 000481 GGCACTCTTT CCTGCAATGG GCACTGATTG AGGGTCTTCC TGGTGTGGCA TCATCAAATC CCTGTTGCTC AAACCCACTA 000560 000561 ATTAGCTCAT TCTTATCTAC AAGTAGCAGG GGCCCTAAAG CTCTCTGAGA AGATCTCATA CTGTGTCTCC TACATTTCAT 000640 000641 CTTCTATAAT CTCTTATTCT TAGAGACAGA AAGATGGTTA AAAGACATCA CTTCATTTCT TTCTCTGGAT TTGGAAAGAG 000720 000721 TTATATATTG GGATTATGCT GTTAGTTTAC ACTTGCATTG TTTAAATTAG AGGAAAGGTT ATTTTGTGCA GAACAAATAA 000800 000801 AAATTACTCT TTAACTACCT TTCAGAATAT CCCAACTTTT AACATAAGCT GTTTTGTAAA GGCTGGTTGT AGTGACTTGC 000880 000881 TTCATAATAG ACTATTAAAA TAAGATGCAT TGAAA |
Predicted Small Protein
| Name | ENST00000521996.1_smProtein_467:607 |
| Length | 47 |
| Molecular weight | 4945.6548 |
| Aromaticity | 0.0869565217391 |
| Instability index | 42.2347826087 |
| Isoelectric point | 8.93975830078 |
| Runs | 7 |
| Runs residual | 0.00918737060041 |
| Runs probability | 0.0357205945442 |
| Amino acid sequence | MRTPWHSFLQWALIEGLPGVASSNPCCSNPLISSFLSTSSRGPKAL |
| Secondary structure | LLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLEELEELLLLLLLLLL |
| PRMN | - |
| PiMo | - |
