Difference between revisions of "Lnc-HIVEP2-5:2"

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sequence = <dnaseq>CAGCCCCTAGAAACCTGCCCTTCTCTGGCAGGGTTAGGGCTGAGACTGGGCCCTCAGACCATTTGGAATGACCAGTGATTTCAGCTCTCACTCCCTTCTCATCAGCACGTGTCTACAGTTGCAAAAAATTATGCAGAAGAGCAGATCAGATTGACGCAGTTTGATAAGGATTCAGCCCACCATTGCTGACTTTGAAGATGAAGGAGAGGGACCATGAGCCACAGAAAACCAGCAGCCTCTAGGAACTGGAAAAAGCAAGGAAATGGATTTTCCCCTAGAGCTTCATCCTCCCTCCCAGCACAAGGTCTTAGCACTGTTTCATCTTCCCAGAAGGCTTTTCCCTCTTCCACCCTGCTTCTAGTCCCAATATCATCACCAGATGAGAATATGTATGGATTCATGAACAAGAAAATTGCTTAACCATTTGATCAAGAGAGATTGGAAAATCAAGATGAAGCAGGTCTGGGTGAAAGAGCTGTGAATGGATTAATGGAACAGAAAGGAGGTGTGGAGATCCTTCTATTACATGTTAATGATCACCAGGGAACATCCACTACAATAGAACATCCCACTAAATCACCAGTAGACACAAGAGAATATGTGGCCAGTTGACTTTGGCCAGCCTCTGTCATTAGATGTCAATGTTCAAACAACGGTACATGAATGGCATAGCCCTGGTAGCAGGAGTGGGGGCTATGCATGGATCCAGCAATACACACTCCCACTCCACAACATTGACCCAGCCACCAAGGCTGACAAAATATTCAACCTTCCAGCAACAGAAACCAAGGATGACCCTTATCCCTGCCCAGGTATGGTATTAGCCCTTGAGACTAACCAGCCATGTGGTGGGAAGTTGAATATCTTCTACCCTGGAAAGGTCATTGATTCATTTTAGTATGAATTAATTCATGTTTCTGGGTTGGATTTGCTGTTCTTGCCTGCAGGGCCTCAGCTGGCACCAGCATCTAAAGGCTTAGAGAGTTAGTGATCCACCAACATGGCATCTCACATAACATCCCATCAAACCAAGTGACCCACTTTACTAGAAATGAGGTGCACGAGTGGACAAGCTCCAGCTTGACCCAAGTGGAACAAGCTCTACTAGTCCCATCAGATCATGCACCATCCAGAAGCTGCCACACTAACAGAGTGATGGAAAGGCCTGTTGAAGGCATAGTGGATGAGCCACACCATTGCAAGGTAATGTCATCGGAGGTTTATTTAGCATGTGTATTACACCCAGAAGAATGGTGTCCCATCCTTGCAAGGTAATGTCATCATCAGATTCTCCTGGGTGTAATATACATGCTAAACAAACAATCATTATATGATGCTGTGTCCCCAAGAGGTAAAATATGTGGGAGCTAAGGAGTGGAAGCAGCAATAGCCTCACTTACCATCAATACAATTGACTCCTTAGGGAACTTGTGCCTAGGCTCTGTGGGTTTAGAGGTCCTGGTGCCCAAAGGAGATGTGCTTCCATCAGGGAATACAACAAGCATTCAATTGAACATGAGGTTAAGGCTGCCACTTGGGAGCATCAGGCTCCTCATGCCAAGAGATCACCAAGCAAAAAGAGGAATCACCGTACCATGAGCATTAATCAATCCCATTCTTCAGAAGGAGATGGGACTGCTGACACAAGGCCACAGAGAGGCCCCCAGATAACTTGCCTGGGTGTCCCTTAGAATTCCCTTGCCCATTTTTTAATAATAGATGGATAAATGCAACAGTCTCCACCTAACAAAGGCATAATGATGGGACTTCTCAAGAGTGAGAAGCTAGGTCATTCCACCAGCCAAGTAGACCAGCAGAGGTACCAAAAAGAGACAGGAAATCTAGACTGTAAAGTAAAACAGGAAGATTCCCCAGGAACAGAAGCCAACTGTGATCCTAGAGGAGCTTCTCCTTAACATGCAGAAAGAAGTGGATCCATGAAGCACAAGAGCTGAGCTGTCATGGAAACTGCACATCTCAAATTTCCCATCAGGACTGAAGGACCTAGTCCCCCACAGGCTGAAGACAGTCACCTTACCCAACTTCATGCTCTCTTCCAGGGGCAGCCTGCATCCAACAACTTGTCAGCACAGGACTATAAAGGCCTTACCCTTTGCCTCTGTGAAGCATCCCACAGAGAGGTGCATCCACCTCTGAAGGTACATCCCAGCTTCAGGCTCCCAGTCACTTTGGGCTTACCCAGCCTCTTCGTCTGCCCTGCTTTTCTCCCTCCCCTTCCTTCCTGCAGGTTTGGATCCTGAGAGCACTCCCTAATAAACCTCATGCCCAC</dnaseq>|
 
sequence = <dnaseq>CAGCCCCTAGAAACCTGCCCTTCTCTGGCAGGGTTAGGGCTGAGACTGGGCCCTCAGACCATTTGGAATGACCAGTGATTTCAGCTCTCACTCCCTTCTCATCAGCACGTGTCTACAGTTGCAAAAAATTATGCAGAAGAGCAGATCAGATTGACGCAGTTTGATAAGGATTCAGCCCACCATTGCTGACTTTGAAGATGAAGGAGAGGGACCATGAGCCACAGAAAACCAGCAGCCTCTAGGAACTGGAAAAAGCAAGGAAATGGATTTTCCCCTAGAGCTTCATCCTCCCTCCCAGCACAAGGTCTTAGCACTGTTTCATCTTCCCAGAAGGCTTTTCCCTCTTCCACCCTGCTTCTAGTCCCAATATCATCACCAGATGAGAATATGTATGGATTCATGAACAAGAAAATTGCTTAACCATTTGATCAAGAGAGATTGGAAAATCAAGATGAAGCAGGTCTGGGTGAAAGAGCTGTGAATGGATTAATGGAACAGAAAGGAGGTGTGGAGATCCTTCTATTACATGTTAATGATCACCAGGGAACATCCACTACAATAGAACATCCCACTAAATCACCAGTAGACACAAGAGAATATGTGGCCAGTTGACTTTGGCCAGCCTCTGTCATTAGATGTCAATGTTCAAACAACGGTACATGAATGGCATAGCCCTGGTAGCAGGAGTGGGGGCTATGCATGGATCCAGCAATACACACTCCCACTCCACAACATTGACCCAGCCACCAAGGCTGACAAAATATTCAACCTTCCAGCAACAGAAACCAAGGATGACCCTTATCCCTGCCCAGGTATGGTATTAGCCCTTGAGACTAACCAGCCATGTGGTGGGAAGTTGAATATCTTCTACCCTGGAAAGGTCATTGATTCATTTTAGTATGAATTAATTCATGTTTCTGGGTTGGATTTGCTGTTCTTGCCTGCAGGGCCTCAGCTGGCACCAGCATCTAAAGGCTTAGAGAGTTAGTGATCCACCAACATGGCATCTCACATAACATCCCATCAAACCAAGTGACCCACTTTACTAGAAATGAGGTGCACGAGTGGACAAGCTCCAGCTTGACCCAAGTGGAACAAGCTCTACTAGTCCCATCAGATCATGCACCATCCAGAAGCTGCCACACTAACAGAGTGATGGAAAGGCCTGTTGAAGGCATAGTGGATGAGCCACACCATTGCAAGGTAATGTCATCGGAGGTTTATTTAGCATGTGTATTACACCCAGAAGAATGGTGTCCCATCCTTGCAAGGTAATGTCATCATCAGATTCTCCTGGGTGTAATATACATGCTAAACAAACAATCATTATATGATGCTGTGTCCCCAAGAGGTAAAATATGTGGGAGCTAAGGAGTGGAAGCAGCAATAGCCTCACTTACCATCAATACAATTGACTCCTTAGGGAACTTGTGCCTAGGCTCTGTGGGTTTAGAGGTCCTGGTGCCCAAAGGAGATGTGCTTCCATCAGGGAATACAACAAGCATTCAATTGAACATGAGGTTAAGGCTGCCACTTGGGAGCATCAGGCTCCTCATGCCAAGAGATCACCAAGCAAAAAGAGGAATCACCGTACCATGAGCATTAATCAATCCCATTCTTCAGAAGGAGATGGGACTGCTGACACAAGGCCACAGAGAGGCCCCCAGATAACTTGCCTGGGTGTCCCTTAGAATTCCCTTGCCCATTTTTTAATAATAGATGGATAAATGCAACAGTCTCCACCTAACAAAGGCATAATGATGGGACTTCTCAAGAGTGAGAAGCTAGGTCATTCCACCAGCCAAGTAGACCAGCAGAGGTACCAAAAAGAGACAGGAAATCTAGACTGTAAAGTAAAACAGGAAGATTCCCCAGGAACAGAAGCCAACTGTGATCCTAGAGGAGCTTCTCCTTAACATGCAGAAAGAAGTGGATCCATGAAGCACAAGAGCTGAGCTGTCATGGAAACTGCACATCTCAAATTTCCCATCAGGACTGAAGGACCTAGTCCCCCACAGGCTGAAGACAGTCACCTTACCCAACTTCATGCTCTCTTCCAGGGGCAGCCTGCATCCAACAACTTGTCAGCACAGGACTATAAAGGCCTTACCCTTTGCCTCTGTGAAGCATCCCACAGAGAGGTGCATCCACCTCTGAAGGTACATCCCAGCTTCAGGCTCCCAGTCACTTTGGGCTTACCCAGCCTCTTCGTCTGCCCTGCTTTTCTCCCTCCCCTTCCTTCCTGCAGGTTTGGATCCTGAGAGCACTCCCTAATAAACCTCATGCCCAC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-HIVEP2-5]]
+
[[Category:Intergenic]][[Category:lnc-HIVEP2-5]][[Category:NONHSAG045024]][[Category:Transcripts]]

Latest revision as of 04:25, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-HIVEP2-5:2

Source

LNCipedia2.1

Same with

NONHSAT115315

Classification

intergenic

Length

2290 nt

Genomic location

chr6-:142847592..142958973

Exon number

3

Exons

142847592..142849520,142917437..142917673,142958850..142958973

Genome context

Sequence
000001 CAGCCCCTAG AAACCTGCCC TTCTCTGGCA GGGTTAGGGC TGAGACTGGG CCCTCAGACC ATTTGGAATG ACCAGTGATT 000080
000081 TCAGCTCTCA CTCCCTTCTC ATCAGCACGT GTCTACAGTT GCAAAAAATT ATGCAGAAGA GCAGATCAGA TTGACGCAGT 000160
000161 TTGATAAGGA TTCAGCCCAC CATTGCTGAC TTTGAAGATG AAGGAGAGGG ACCATGAGCC ACAGAAAACC AGCAGCCTCT 000240
000241 AGGAACTGGA AAAAGCAAGG AAATGGATTT TCCCCTAGAG CTTCATCCTC CCTCCCAGCA CAAGGTCTTA GCACTGTTTC 000320
000321 ATCTTCCCAG AAGGCTTTTC CCTCTTCCAC CCTGCTTCTA GTCCCAATAT CATCACCAGA TGAGAATATG TATGGATTCA 000400
000401 TGAACAAGAA AATTGCTTAA CCATTTGATC AAGAGAGATT GGAAAATCAA GATGAAGCAG GTCTGGGTGA AAGAGCTGTG 000480
000481 AATGGATTAA TGGAACAGAA AGGAGGTGTG GAGATCCTTC TATTACATGT TAATGATCAC CAGGGAACAT CCACTACAAT 000560
000561 AGAACATCCC ACTAAATCAC CAGTAGACAC AAGAGAATAT GTGGCCAGTT GACTTTGGCC AGCCTCTGTC ATTAGATGTC 000640
000641 AATGTTCAAA CAACGGTACA TGAATGGCAT AGCCCTGGTA GCAGGAGTGG GGGCTATGCA TGGATCCAGC AATACACACT 000720
000721 CCCACTCCAC AACATTGACC CAGCCACCAA GGCTGACAAA ATATTCAACC TTCCAGCAAC AGAAACCAAG GATGACCCTT 000800
000801 ATCCCTGCCC AGGTATGGTA TTAGCCCTTG AGACTAACCA GCCATGTGGT GGGAAGTTGA ATATCTTCTA CCCTGGAAAG 000880
000881 GTCATTGATT CATTTTAGTA TGAATTAATT CATGTTTCTG GGTTGGATTT GCTGTTCTTG CCTGCAGGGC CTCAGCTGGC 000960
000961 ACCAGCATCT AAAGGCTTAG AGAGTTAGTG ATCCACCAAC ATGGCATCTC ACATAACATC CCATCAAACC AAGTGACCCA 001040
001041 CTTTACTAGA AATGAGGTGC ACGAGTGGAC AAGCTCCAGC TTGACCCAAG TGGAACAAGC TCTACTAGTC CCATCAGATC 001120
001121 ATGCACCATC CAGAAGCTGC CACACTAACA GAGTGATGGA AAGGCCTGTT GAAGGCATAG TGGATGAGCC ACACCATTGC 001200
001201 AAGGTAATGT CATCGGAGGT TTATTTAGCA TGTGTATTAC ACCCAGAAGA ATGGTGTCCC ATCCTTGCAA GGTAATGTCA 001280
001281 TCATCAGATT CTCCTGGGTG TAATATACAT GCTAAACAAA CAATCATTAT ATGATGCTGT GTCCCCAAGA GGTAAAATAT 001360
001361 GTGGGAGCTA AGGAGTGGAA GCAGCAATAG CCTCACTTAC CATCAATACA ATTGACTCCT TAGGGAACTT GTGCCTAGGC 001440
001441 TCTGTGGGTT TAGAGGTCCT GGTGCCCAAA GGAGATGTGC TTCCATCAGG GAATACAACA AGCATTCAAT TGAACATGAG 001520
001521 GTTAAGGCTG CCACTTGGGA GCATCAGGCT CCTCATGCCA AGAGATCACC AAGCAAAAAG AGGAATCACC GTACCATGAG 001600
001601 CATTAATCAA TCCCATTCTT CAGAAGGAGA TGGGACTGCT GACACAAGGC CACAGAGAGG CCCCCAGATA ACTTGCCTGG 001680
001681 GTGTCCCTTA GAATTCCCTT GCCCATTTTT TAATAATAGA TGGATAAATG CAACAGTCTC CACCTAACAA AGGCATAATG 001760
001761 ATGGGACTTC TCAAGAGTGA GAAGCTAGGT CATTCCACCA GCCAAGTAGA CCAGCAGAGG TACCAAAAAG AGACAGGAAA 001840
001841 TCTAGACTGT AAAGTAAAAC AGGAAGATTC CCCAGGAACA GAAGCCAACT GTGATCCTAG AGGAGCTTCT CCTTAACATG 001920
001921 CAGAAAGAAG TGGATCCATG AAGCACAAGA GCTGAGCTGT CATGGAAACT GCACATCTCA AATTTCCCAT C