Difference between revisions of "NONHSAT061178"
Line 42: | Line 42: | ||
sequence = <dnaseq>GGCAAGTGAGGAATATGAAATAACCTTATGGCTGAATCAGGGTGAAGGGGAAGCTTGTAAGCATGGAAGACGCTCTACTCAAACTAAAAAGTTCAAGTTCTGATCCAGCAGATGAAGAGGGAGGCCTGAGAGGCTGCTGTTCTAACTCGCTCCCAGCCGAGTGTGATGGCTCATGCCTGTAATCCTAGCACCTTGGGAGGCCGAGGTGTGCGAATCACGTGAAGACAGGAGTTTGAGACCAGCCTGGGCAACACGAGACGGGGCCTTACTCTGCTGCCTAGGCTGGAGTACAGTGGCACAATCATAGCTGATTGCAGCCTCAAACTCCTGGGCTCAAGCGAAACTCCCACGTCAGCCTCCTGAGTACCTGGGACTACAGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGTACTGAGGATGGAGGACAAGGGGTCAGTGGAGACCCAGCTTTGAGCAGAGCCCTGCCTAAGGTCCAGGGCTCGATCTGGCCCTAACCACAGAGTCACCTTGAGGTATGTAACCCCTCCTGGCTTCAATTTCCTGACTTTTAGGAGTGTATTAATCCTATTTCATAGGTAGAGCACTTAGTAAGAAATTGGTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGTGGATTGCTTGAGCCCAGGAATTTGAGACCAGCCTGGGCAACATAGTGAGACCTTGCCTCTAC</dnaseq>| | sequence = <dnaseq>GGCAAGTGAGGAATATGAAATAACCTTATGGCTGAATCAGGGTGAAGGGGAAGCTTGTAAGCATGGAAGACGCTCTACTCAAACTAAAAAGTTCAAGTTCTGATCCAGCAGATGAAGAGGGAGGCCTGAGAGGCTGCTGTTCTAACTCGCTCCCAGCCGAGTGTGATGGCTCATGCCTGTAATCCTAGCACCTTGGGAGGCCGAGGTGTGCGAATCACGTGAAGACAGGAGTTTGAGACCAGCCTGGGCAACACGAGACGGGGCCTTACTCTGCTGCCTAGGCTGGAGTACAGTGGCACAATCATAGCTGATTGCAGCCTCAAACTCCTGGGCTCAAGCGAAACTCCCACGTCAGCCTCCTGAGTACCTGGGACTACAGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGTACTGAGGATGGAGGACAAGGGGTCAGTGGAGACCCAGCTTTGAGCAGAGCCCTGCCTAAGGTCCAGGGCTCGATCTGGCCCTAACCACAGAGTCACCTTGAGGTATGTAACCCCTCCTGGCTTCAATTTCCTGACTTTTAGGAGTGTATTAATCCTATTTCATAGGTAGAGCACTTAGTAAGAAATTGGTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGTGGATTGCTTGAGCCCAGGAATTTGAGACCAGCCTGGGCAACATAGTGAGACCTTGCCTCTAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG024851]] | + | [[Category:Antisense]][[Category:NONHSAG024851]][[Category:Transcripts]] |
Latest revision as of 22:46, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT061178 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
737 nt |
Genomic location |
chr19+:11670276..11686382 |
Exon number |
5 |
Exons |
11670276..11670431,11672941..11673039,11674876..11674999,11675260..11675307,11686065..11686382 |
Genome context |
|
Sequence |
000001 GGCAAGTGAG GAATATGAAA TAACCTTATG GCTGAATCAG GGTGAAGGGG AAGCTTGTAA GCATGGAAGA CGCTCTACTC 000080
000081 AAACTAAAAA GTTCAAGTTC TGATCCAGCA GATGAAGAGG GAGGCCTGAG AGGCTGCTGT TCTAACTCGC TCCCAGCCGA 000160 000161 GTGTGATGGC TCATGCCTGT AATCCTAGCA CCTTGGGAGG CCGAGGTGTG CGAATCACGT GAAGACAGGA GTTTGAGACC 000240 000241 AGCCTGGGCA ACACGAGACG GGGCCTTACT CTGCTGCCTA GGCTGGAGTA CAGTGGCACA ATCATAGCTG ATTGCAGCCT 000320 000321 CAAACTCCTG GGCTCAAGCG AAACTCCCAC GTCAGCCTCC TGAGTACCTG GGACTACAGG TTCAAGTGAT TCTTCTGCCT 000400 000401 CAGCCTCCCA AGTAGCTGGA ATTACAGGTA CTGAGGATGG AGGACAAGGG GTCAGTGGAG ACCCAGCTTT GAGCAGAGCC 000480 000481 CTGCCTAAGG TCCAGGGCTC GATCTGGCCC TAACCACAGA GTCACCTTGA GGTATGTAAC CCCTCCTGGC TTCAATTTCC 000560 000561 TGACTTTTAG GAGTGTATTA ATCCTATTTC ATAGGTAGAG CACTTAGTAA GAAATTGGTG GCCAGGTGTG GTGGCTCATG 000640 000641 CCTGTAATCC CAGCACTTTG GGAGGCTGAG GGGGTGGATT GCTTGAGCCC AGGAATTTGA GACCAGCCTG GGCAACATAG 000720 000721 TGAGACCTTG CCTCTAC |
Predicted Small Protein
Name | NONHSAT061178_smProtein_62:181 |
Length | 40 |
Molecular weight | 3989.3774 |
Aromaticity | 0.0 |
Instability index | 79.3923076923 |
Isoelectric point | 4.07171630859 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0374618315795 |
Amino acid sequence | MEDALLKLKSSSSDPADEEGGLRGCCSNSLPAECDGSCL |
Secondary structure | LHHHHHHHHLLLLLLHHHLLLLLEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |