Difference between revisions of "ENST00000497774.1"

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sequence = <dnaseq>AGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTGGGGTCGGCTTGCAGTTTGGGGTACCCCGAGGGCGGTGTACGTCGGTAAGATTGTAACAGTATTACTGGAAGACTTATTCGACTGTCCTGATGATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGAAACCTCTACAACTTAGTTGACCGTAACTGCCAGAGCCCTGCCCTGAATTCCTGTCCTTACTCCCTCTTTAAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTGAGAGGCTCTCTGGTGTAGGGTTTAACATGGAACGTAGTTTTGTCACTTGAATGCACGGAAATTGGCGTTTTGACAGTTTTCTACGTTTAGGTGTTTTATACACTTTAGGGTAACGTTATCATGTCATTGCATAGGGTGGAACTTAAATAGAAACTGGAGATGGCTGCTTCAGCCACAGTCCTAACCTAGAACTGCATTTAAAGCAAACTGATAATGCAGAAACAAACTCCTTCGTTAAGAAATGTCTCCAGTAGCAGGGTTAGCTTAAGTTTCAGGTAGGGTCTAGATCTGCGGTTGGAACAGTACTGGAGGGTTGTGAGGTGCTTGACTGCTCTGATGAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAA</dnaseq>|
 
sequence = <dnaseq>AGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTGGGGTCGGCTTGCAGTTTGGGGTACCCCGAGGGCGGTGTACGTCGGTAAGATTGTAACAGTATTACTGGAAGACTTATTCGACTGTCCTGATGATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGAAACCTCTACAACTTAGTTGACCGTAACTGCCAGAGCCCTGCCCTGAATTCCTGTCCTTACTCCCTCTTTAAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTGAGAGGCTCTCTGGTGTAGGGTTTAACATGGAACGTAGTTTTGTCACTTGAATGCACGGAAATTGGCGTTTTGACAGTTTTCTACGTTTAGGTGTTTTATACACTTTAGGGTAACGTTATCATGTCATTGCATAGGGTGGAACTTAAATAGAAACTGGAGATGGCTGCTTCAGCCACAGTCCTAACCTAGAACTGCATTTAAAGCAAACTGATAATGCAGAAACAAACTCCTTCGTTAAGAAATGTCTCCAGTAGCAGGGTTAGCTTAAGTTTCAGGTAGGGTCTAGATCTGCGGTTGGAACAGTACTGGAGGGTTGTGAGGTGCTTGACTGCTCTGATGAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]]
+
[[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]][[Category:ENSG00000175061.13]][[Category:Transcripts]]

Latest revision as of 16:28, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000497774.1

Source

Gencode19

Same with

lnc-TRPV2-1:6,NONHSAT145950

Classification

intergenic

Length

1662 nt

Genomic location

chr17+:16342325..16345309

Exon number

4

Exons

16342325..16342374,16342641..16343567,16344388..16344444,16344682..16345309

Genome context

Sequence
000001 AGGGCCTGGC GCACATAAGG TGTGACCTTT TCATTCCCGT TGTTATGGAG GGCCACATCT GCCAGAGCCT GGAGTCTGCG 000080
000081 AAGGCCGGGA CCCGGTTCCC CGGCCCACAG TGGGGGTGTG CAAACCCGAG AGAACTGGGT AAGTTGGGGT CGGCTTGCAG 000160
000161 TTTGGGGTAC CCCGAGGGCG GTGTACGTCG GTAAGATTGT AACAGTATTA CTGGAAGACT TATTCGACTG TCCTGATGAT 000240
000241 ACTTGTAATA GGAAGTGCCG TCAGAAGCGA TAACTGACGA CGTCTAATGT CTATCTGACC GCAGTCGCTG AAACCTCTAC 000320
000321 AACTTAGTTG ACCGTAACTG CCAGAGCCCT GCCCTGAATT CCTGTCCTTA CTCCCTCTTT AAGATTGCGT ACCCACTGCA 000400
000401 GAGTGCTGAA GACGGGGTAG CCACGAGGTG AGAGGCTCTC TGGTGTAGGG TTTAACATGG AACGTAGTTT TGTCACTTGA 000480
000481 ATGCACGGAA ATTGGCGTTT TGACAGTTTT CTACGTTTAG GTGTTTTATA CACTTTAGGG TAACGTTATC ATGTCATTGC 000560
000561 ATAGGGTGGA ACTTAAATAG AAACTGGAGA TGGCTGCTTC AGCCACAGTC CTAACCTAGA ACTGCATTTA AAGCAAACTG 000640
000641 ATAATGCAGA AACAAACTCC TTCGTTAAGA AATGTCTCCA GTAGCAGGGT TAGCTTAAGT TTCAGGTAGG GTCTAGATCT 000720
000721 GCGGTTGGAA CAGTACTGGA GGGTTGTGAG GTGCTTGACT GCTCTGATGA AATCACTAAT AGGAAGTGCC GTCAGAAGCG 000800
000801 ATAACTGACG AAGACTACTC CTGTCTGATT GCAGTCAAGT CTTCACCACT TGCTGGTTCC CAGGAGTAAA CTTGTTTGAA 000880
000881 CGGTGACCTA ATTGCTATAT TCACCTAGGT TGCAAATTCG TGAAGAATCA GCATCATGTT TGGCAGCTGA GTATTGGAGC 000960
000961 CAGGAGCCTG CCATGAGGTT TTGAGAACAG AGTGCTGTTT TAGAGCTGGC AGCAGCATCT CAGCCCAAGA GAAGGTTATA 001040
001041 TTCCCAGAGG ATGTCAGTCC CAAGGACCAG TAGCTGCCAT CAGTTTGGAT TCTGAAAACT AACTGGCATC AACACTGGGT 001120
001121 GTAGAAACAT GCTTGCCTTA TGTATCAGAG GACATGCTCA GCAGATCCAA GAGATATATT TGGCAACTTT TTCTAGAAAA 001200
001201 GGCACATTGG GTATCATTCA TTACATTCTT GAGTTTTTTT GGGTTTTTTT TTTTTTTTTT GAGACAGTCT TGCTGTATTG 001280
001281 CCCAGGCTGG AGTGTGGTGG CACAATCACA GCTCATTGCA TCCTCAATCA CCCAGGCCTA AGCAATCCTC CCACCTTGTA 001360
001361 GCTGGGACTA CAGCTCACAG CACACCTGGC TAAAATTTTT TTTTTGTTGA GACGGATTCT CTATGTTGCC CAGGCTGGTC 001440
001441 TCAGGCTCCT GGGCTCAGAT GGTCCTCCTG CCTCAGCTTC CAAAGGCACA GGCCAAGTTG TAGCTTTGTC CCTTGCCATC 001520
001521 ATGCCCAACA AGAGGTTCTA TACCTTTTAA TGAATTGACT TTCATAAATT GGTTATGTTG GTGGGCAAAG TTCTTTAAGC 001600
001601 TGGAAATTGT AAATTCCTCC TGAAATGTTT TTTCATGCAG TTACCATGAA CTAATACTAC AA
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Predicted Small Protein

Name ENST00000497774.1_smProtein_44:193
Length 50
Molecular weight 5160.8068
Aromaticity 0.0612244897959
Instability index 56.0510204082
Isoelectric point 8.63214111328
Runs 9
Runs residual 0.0216216216216
Runs probability 0.00718365424248
Amino acid sequence MEGHICQSLESAKAGTRFPGPQWGCANPRELGKLGSACSLGYPEGGVRR
Secondary structure LLLEELLLHHHLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEEL
PRMN -
PiMo -