Difference between revisions of "ENST00000520913.1"

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sequence = <dnaseq>GTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAGGACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAGTCCCAGCCTGCTATGGAAGCATCACTGGACTCCCATTGAACTCTGTGCAGATTCGCTGTTCGTAGACATGGTACCTGATGGACACCAAGCTACGTACAGCTTCAAGGCCCCTTCTTTCTTTGCTAATAAAAAATAAAAAATAAAA</dnaseq>|
 
sequence = <dnaseq>GTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAGGACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAGTCCCAGCCTGCTATGGAAGCATCACTGGACTCCCATTGAACTCTGTGCAGATTCGCTGTTCGTAGACATGGTACCTGATGGACACCAAGCTACGTACAGCTTCAAGGCCCCTTCTTTCTTTGCTAATAAAAAATAAAAAATAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:lnc-MYC-2]]
+
[[Category:Intergenic]][[Category:lnc-MYC-2]][[Category:NONHSAG051258]][[Category:Transcripts]]

Latest revision as of 16:58, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000520913.1

Source

Gencode19

Same with

lnc-MYC-2:15,NONHSAT147663

Classification

intergenic

Length

584 nt

Genomic location

chr8+:128902892..128944941

Exon number

2

Exons

128902892..128903244,128944711..128944941

Genome context

Sequence
000001 GTCAGCTGCA TGGAGCTTCG TTCAAGTATT TTCTGAGCCT GATGGATTTA CAGTGATCTT CAGTGGTCTG GGGAATAACG 000080
000081 CTGGTGGAAC CATGCACTGG AATGACACAC GCCCGGCACA TTTCAGGATA CTAAAAGTGG TTTTAAGGGA GGCTGTGGCT 000160
000161 GAATGCCTCA TGGATTCTTA CAGCTTGGAT GTCCATGGGG GACGAAGGAC TGCAGCTGGC TGAGAGGGTT GAGATCTCTG 000240
000241 TTTACTTAGA TCTCTGCCAA CTTCCTTTGG GTCTCCCTAT GGAATGTAAG ACCCCGACTC TTCCTGGTGA AGCATCTGAT 000320
000321 GCACGTTCCA TCCGGCGCTC AGCTGGGCTT GAGGACTTCG CAGGTGAGCA GTAACGGAAA TCAGCCCCGT TTATTCCTCC 000400
000401 CAGCACCTGC CTTATCCAAC TCCCCACGCT GTGGCTGAGT CCCAGCCTGC TATGGAAGCA TCACTGGACT CCCATTGAAC 000480
000481 TCTGTGCAGA TTCGCTGTTC GTAGACATGG TACCTGATGG ACACCAAGCT ACGTACAGCT TCAAGGCCCC TTCTTTCTTT 000560
000561 GCTAATAAAA AATAAAAAAT AAAA
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Predicted Small Protein

Name ENST00000520913.1_smProtein_188:373
Length 62
Molecular weight 6596.4344
Aromaticity 0.0327868852459
Instability index 64.9114754098
Isoelectric point 4.25067138672
Runs 10
Runs residual 0.0111173921236
Runs probability 0.0290496378731
Amino acid sequence MSMGDEGLQLAERVEISVYLDLCQLPLGLPMECKTPTLPGEASDARSIRRSAGLEDFAGE
Q
Secondary structure LLLLHHHHLHHHEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLHHHLLL
L
PRMN -
PiMo -