Difference between revisions of "NONHSAT106359"
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sequence = <dnaseq>GCGCACCAACAGTGTTATCGGCAGGCTGCCTGACTTGGAAAAGGAGGAAGGTCGTTCCTACACATTTTCGTTCCTTGTTGGTTTTCACTACAAAGGACCTCACACACCCCCATAGTGCCCGTGGGCTGGCGTGTCCCCAGGATAAATAAAACCTGCATTTTTCTTATTAATCATCAATATGAAAACACATGACCTCTCTTTCTATTGTTCTGTGCCTGGTTCACGCCCTGTATAATTTTATATGGTTCCTACAGCCCTGACATGCCCTGAGCAACAATCGACATTGATTCACTGACTTATAAAAGTGTATTATCTGTTCTCTGTGTCTACGTAGAGTTCTCTGAGAGTTGCCCAGGCAGTGACTCAGGACTCCAGAGAGAGGTGCACAGAGCGGTCACACACCAGGGAGGGAGCGATTTGCAACTCAGAATACTTCTTAGCAGAAAGCACATTTGGGCTTGATCTGCTCCTTGATTTCTGTGGGAGTGACTTCGTGACAGTTTCAAGCTGAATCCTACATTTGCTTCTTAAGTCAACTGAAATTCCATTCGAGTTAGATCCATTCTGTGTCCACTTTAAAAGCCAAGCTGTTTAGTGGGGGATTGTTATGACACAGCAAGCTTGACAAAAAATACACCTGGTCTTAGAAGCAATCTTTGCATAGCTCTGAATGCACAGAAGAAAATCGTGCTTGGGTAAAGGCAAGGATTTCACTAGGCATAACTCACCATGAGGCATAGATCCTTGAGCAAAAGTCCAGCAGTATGTATGTATGCATGCTGAGCATGATGCTACCAGCTTAGCAGCAAATGTTGGTGAAGGAAAATAAAACAATGCATGTGTCCAACATTAAAAGTTTCTAAGTTTAAAAGTACAACAAAATTCTGCTAAATTTCTAACGGACGCTAATGTTTACAACTTCTCTTTGAGTCAGAAGGTTTTAGTTATTACTAAAACATGCTTCCTCAATTCCAAGCCTCTTCATTTTAATGTATTTGTAACTAGGCAATTACACAGTCTGGAGAGATCCTTCGTGCTCACTAAATATCCATGCTCTTTCTTCCATTTCCCAGCCTTCTTTGCAGTTTTCCTGGACTCATGAAATAAGAACAAAGGCATTGTGCATCGCCTTCAGGTTGAGGCAGCTAAAAGCTAGTAAGCCTCCTTCATTTCCCTCTTCCCCTGACAGTGGGGGACCTGTGCTCTAGAGGGCATCCCCGCATAAGGAGAGTGGCGGCCCGGCCCACATTCAACTGTGACCTGAGAAAGGAATGAACCGTGATGATGTGAAAGAATGCTGTGGCCTTTGTGTGTTACCACAGCATAGCTTGTCCTATCCTGTCTAATACACACATTTAAGGTAAAGAGGATTTTCCCCTGCAAAGCTAATATTACATCTATGACAAATGTTATCATTATTGTCATAGAATCCAAAAAATACAAATTCTATTTATTTAACTTCAGTGGTAAATGAGAAACTTTCGAGAAGCAGTAATTGTATCTAGAGAAGCTATTCTCAGTTGAAGGTAGGGGCAGCTTCCAGACAATCCCTAGAGAGCACTCCCAAACCCCTATACCTTCCCCACCCTAATCCTCTTACCCTCCAGATTTGGAGACAACTTTTTCTTCTACATACTTTTGATAACCACAAATTAGAGAGAGAGAGAGCAAGATTCCAGGAGCATCCACCAGTTGAGCCGTGAACAATGCAGGGTTTAGGGGTGGTGACCCCTGCAAGTCAAAACCCCACATACAATTTTTGACTCCCCAAAAACTTGACTCTAACAGCTACTGTTGACCAGAAGCCTTACTGAGAGCGTAAACCATCGACTAACACGTTATGTATGCTGTATGTATTACATACTGTATTCTTACAATAAAATAAGCTAGAGAAAAGAAAATGTTATTAAGAAAATTGTGTGGAGGAGGAGGAAAAGAAGGAGTTGGCCTTGCTGTCTCAGGGGTACCAGATATGGAAGAGAATGCGCATATAAGTGGACCTGCACAGTTTAAACCTGTG</dnaseq>| | sequence = <dnaseq>GCGCACCAACAGTGTTATCGGCAGGCTGCCTGACTTGGAAAAGGAGGAAGGTCGTTCCTACACATTTTCGTTCCTTGTTGGTTTTCACTACAAAGGACCTCACACACCCCCATAGTGCCCGTGGGCTGGCGTGTCCCCAGGATAAATAAAACCTGCATTTTTCTTATTAATCATCAATATGAAAACACATGACCTCTCTTTCTATTGTTCTGTGCCTGGTTCACGCCCTGTATAATTTTATATGGTTCCTACAGCCCTGACATGCCCTGAGCAACAATCGACATTGATTCACTGACTTATAAAAGTGTATTATCTGTTCTCTGTGTCTACGTAGAGTTCTCTGAGAGTTGCCCAGGCAGTGACTCAGGACTCCAGAGAGAGGTGCACAGAGCGGTCACACACCAGGGAGGGAGCGATTTGCAACTCAGAATACTTCTTAGCAGAAAGCACATTTGGGCTTGATCTGCTCCTTGATTTCTGTGGGAGTGACTTCGTGACAGTTTCAAGCTGAATCCTACATTTGCTTCTTAAGTCAACTGAAATTCCATTCGAGTTAGATCCATTCTGTGTCCACTTTAAAAGCCAAGCTGTTTAGTGGGGGATTGTTATGACACAGCAAGCTTGACAAAAAATACACCTGGTCTTAGAAGCAATCTTTGCATAGCTCTGAATGCACAGAAGAAAATCGTGCTTGGGTAAAGGCAAGGATTTCACTAGGCATAACTCACCATGAGGCATAGATCCTTGAGCAAAAGTCCAGCAGTATGTATGTATGCATGCTGAGCATGATGCTACCAGCTTAGCAGCAAATGTTGGTGAAGGAAAATAAAACAATGCATGTGTCCAACATTAAAAGTTTCTAAGTTTAAAAGTACAACAAAATTCTGCTAAATTTCTAACGGACGCTAATGTTTACAACTTCTCTTTGAGTCAGAAGGTTTTAGTTATTACTAAAACATGCTTCCTCAATTCCAAGCCTCTTCATTTTAATGTATTTGTAACTAGGCAATTACACAGTCTGGAGAGATCCTTCGTGCTCACTAAATATCCATGCTCTTTCTTCCATTTCCCAGCCTTCTTTGCAGTTTTCCTGGACTCATGAAATAAGAACAAAGGCATTGTGCATCGCCTTCAGGTTGAGGCAGCTAAAAGCTAGTAAGCCTCCTTCATTTCCCTCTTCCCCTGACAGTGGGGGACCTGTGCTCTAGAGGGCATCCCCGCATAAGGAGAGTGGCGGCCCGGCCCACATTCAACTGTGACCTGAGAAAGGAATGAACCGTGATGATGTGAAAGAATGCTGTGGCCTTTGTGTGTTACCACAGCATAGCTTGTCCTATCCTGTCTAATACACACATTTAAGGTAAAGAGGATTTTCCCCTGCAAAGCTAATATTACATCTATGACAAATGTTATCATTATTGTCATAGAATCCAAAAAATACAAATTCTATTTATTTAACTTCAGTGGTAAATGAGAAACTTTCGAGAAGCAGTAATTGTATCTAGAGAAGCTATTCTCAGTTGAAGGTAGGGGCAGCTTCCAGACAATCCCTAGAGAGCACTCCCAAACCCCTATACCTTCCCCACCCTAATCCTCTTACCCTCCAGATTTGGAGACAACTTTTTCTTCTACATACTTTTGATAACCACAAATTAGAGAGAGAGAGAGCAAGATTCCAGGAGCATCCACCAGTTGAGCCGTGAACAATGCAGGGTTTAGGGGTGGTGACCCCTGCAAGTCAAAACCCCACATACAATTTTTGACTCCCCAAAAACTTGACTCTAACAGCTACTGTTGACCAGAAGCCTTACTGAGAGCGTAAACCATCGACTAACACGTTATGTATGCTGTATGTATTACATACTGTATTCTTACAATAAAATAAGCTAGAGAAAAGAAAATGTTATTAAGAAAATTGTGTGGAGGAGGAGGAAAAGAAGGAGTTGGCCTTGCTGTCTCAGGGGTACCAGATATGGAAGAGAATGCGCATATAAGTGGACCTGCACAGTTTAAACCTGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG042561]] | + | [[Category:Intergenic]][[Category:NONHSAG042561]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:39, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106359 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2020 nt |
Genomic location |
chr6-:1062458..1064477 |
Exon number |
1 |
Exons |
1062458..1064477 |
Genome context |
|
Sequence |
000001 GCGCACCAAC AGTGTTATCG GCAGGCTGCC TGACTTGGAA AAGGAGGAAG GTCGTTCCTA CACATTTTCG TTCCTTGTTG 000080
000081 GTTTTCACTA CAAAGGACCT CACACACCCC CATAGTGCCC GTGGGCTGGC GTGTCCCCAG GATAAATAAA ACCTGCATTT 000160 000161 TTCTTATTAA TCATCAATAT GAAAACACAT GACCTCTCTT TCTATTGTTC TGTGCCTGGT TCACGCCCTG TATAATTTTA 000240 000241 TATGGTTCCT ACAGCCCTGA CATGCCCTGA GCAACAATCG ACATTGATTC ACTGACTTAT AAAAGTGTAT TATCTGTTCT 000320 000321 CTGTGTCTAC GTAGAGTTCT CTGAGAGTTG CCCAGGCAGT GACTCAGGAC TCCAGAGAGA GGTGCACAGA GCGGTCACAC 000400 000401 ACCAGGGAGG GAGCGATTTG CAACTCAGAA TACTTCTTAG CAGAAAGCAC ATTTGGGCTT GATCTGCTCC TTGATTTCTG 000480 000481 TGGGAGTGAC TTCGTGACAG TTTCAAGCTG AATCCTACAT TTGCTTCTTA AGTCAACTGA AATTCCATTC GAGTTAGATC 000560 000561 CATTCTGTGT CCACTTTAAA AGCCAAGCTG TTTAGTGGGG GATTGTTATG ACACAGCAAG CTTGACAAAA AATACACCTG 000640 000641 GTCTTAGAAG CAATCTTTGC ATAGCTCTGA ATGCACAGAA GAAAATCGTG CTTGGGTAAA GGCAAGGATT TCACTAGGCA 000720 000721 TAACTCACCA TGAGGCATAG ATCCTTGAGC AAAAGTCCAG CAGTATGTAT GTATGCATGC TGAGCATGAT GCTACCAGCT 000800 000801 TAGCAGCAAA TGTTGGTGAA GGAAAATAAA ACAATGCATG TGTCCAACAT TAAAAGTTTC TAAGTTTAAA AGTACAACAA 000880 000881 AATTCTGCTA AATTTCTAAC GGACGCTAAT GTTTACAACT TCTCTTTGAG TCAGAAGGTT TTAGTTATTA CTAAAACATG 000960 000961 CTTCCTCAAT TCCAAGCCTC TTCATTTTAA TGTATTTGTA ACTAGGCAAT TACACAGTCT GGAGAGATCC TTCGTGCTCA 001040 001041 CTAAATATCC ATGCTCTTTC TTCCATTTCC CAGCCTTCTT TGCAGTTTTC CTGGACTCAT GAAATAAGAA CAAAGGCATT 001120 001121 GTGCATCGCC TTCAGGTTGA GGCAGCTAAA AGCTAGTAAG CCTCCTTCAT TTCCCTCTTC CCCTGACAGT GGGGGACCTG 001200 001201 TGCTCTAGAG GGCATCCCCG CATAAGGAGA GTGGCGGCCC GGCCCACATT CAACTGTGAC CTGAGAAAGG AATGAACCGT 001280 001281 GATGATGTGA AAGAATGCTG TGGCCTTTGT GTGTTACCAC AGCATAGCTT GTCCTATCCT GTCTAATACA CACATTTAAG 001360 001361 GTAAAGAGGA TTTTCCCCTG CAAAGCTAAT ATTACATCTA TGACAAATGT TATCATTATT GTCATAGAAT CCAAAAAATA 001440 001441 CAAATTCTAT TTATTTAACT TCAGTGGTAA ATGAGAAACT TTCGAGAAGC AGTAATTGTA TCTAGAGAAG CTATTCTCAG 001520 001521 TTGAAGGTAG GGGCAGCTTC CAGACAATCC CTAGAGAGCA CTCCCAAACC CCTATACCTT CCCCACCCTA ATCCTCTTAC 001600 001601 CCTCCAGATT TGGAGACAAC TTTTTCTTCT ACATACTTTT GATAACCACA AATTAGAGAG AGAGAGAGCA AGATTCCAGG 001680 001681 AGCATCCACC AGTTGAGCCG TGAACAATGC AGGGTTTAGG GGTGGTGACC CCTGCAAGTC AAAACCCCAC ATACAATTTT 001760 001761 TGACTCCCCA AAAACTTGAC TCTAACAGCT ACTGTTGACC AGAAGCCTTA CTGAGAGCGT AAACCATCGA CTAACACGTT 001840 001841 ATGTATGCTG TATGTATTAC ATACTGTATT CTTACAATAA AATAAGCTAG AGAAAAGAAA ATGTTATTAA GAAAATTGTG 001920 001921 TGGAGGAGGA GGAAAAGAAG GAGTTGGCCT TGCTGTCTCA GGGGTACCAG ATATGGAAGA GAATGCGCAT ATAAGTGGAC 002000 002001 CTGCACAGTT TAAACCTGTG |
Predicted Small Protein
Name | NONHSAT106359_smProtein_1271:1345 |
Length | 25 |
Molecular weight | 2707.1332 |
Aromaticity | 0.0416666666667 |
Instability index | 52.7666666667 |
Isoelectric point | 5.36175537109 |
Runs | 5 |
Runs residual | 0.0267857142857 |
Runs probability | 0.0468291821233 |
Amino acid sequence | MNRDDVKECCGLCVLPQHSLSYPV |
Secondary structure | LLHHHHHHHLLLEELLLLLLLLLL |
PRMN | - |
PiMo | - |