Difference between revisions of "NONHSAT127815"

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sequence = <dnaseq>gaggaacggcacatgacccaggcctatgccaatcagcatttcacattcctcatggttggttcaaagCTCCCACAGGCCCATTCTGGTGACTCATGACTTGTATACACAGAACAACAGAGAAAAGAAAAATAGAATTAGATAAACAAGCAGGGGCAACAGTGAGGGCTATGTCTTACAAAGAACCATTTTTAATTGAATTCATTTTCTCTCTTGAAATTCTTTTTTTTTTCCCTCAAAAGTGGGAAAAAATTCTCAAATAACAACAGCAAACCAAGAAAGCAGCTTAGTCTGCACTGCATTTGCATTTCTTAGTTTCATTCCCTATTCAAAAATGTCTTAGGCAAATGTGTGGGAATGAACATGCACTTTAAAATTATGGGACCTAGTAgatttaatggaatgagccctggattgggagccaggggacctggctttgaatggtcccaacccaggcacttattTACCTTAGTTTCTTCACTTATAAAATTAAACACAccatctactgatgaatggataaacaaaatgtgatatatccacagaagggaatcttgttcagctgtgagaaggaatgaagtatggacatgtgctataatgtggatgtgcgttaaagacattatgctaagtgaaagaagccagacacaaagaccatacatttcacgattccacttacatgaaatgtacagaatagctaaatctaaggacataaagtaggttagctaatgggtacaggtttcattctgggttgatgaaatgttccaaaattgattgtgctgatggttgtatttaaaactctgcatatactgaaaaccatttaattgtacattttaaatgagtgaattgtatgctatgtgaattatatctcaataaagttgttcaaaaaAAAGAGAAAAAAATGAAACAGTGATTTCCACCCAGCCCAGATATGTTGTGAAGCTCAAATGAATTGTTTTTACAAATAAGAAAACCACTTAAAACTATACAATGAAAATTATTTTTAAACTTAATTATTTCTTAAATTCGAGGCTGATATACTAAAGGAATTTTTCCAGTGACAGTT</dnaseq>|
 
sequence = <dnaseq>gaggaacggcacatgacccaggcctatgccaatcagcatttcacattcctcatggttggttcaaagCTCCCACAGGCCCATTCTGGTGACTCATGACTTGTATACACAGAACAACAGAGAAAAGAAAAATAGAATTAGATAAACAAGCAGGGGCAACAGTGAGGGCTATGTCTTACAAAGAACCATTTTTAATTGAATTCATTTTCTCTCTTGAAATTCTTTTTTTTTTCCCTCAAAAGTGGGAAAAAATTCTCAAATAACAACAGCAAACCAAGAAAGCAGCTTAGTCTGCACTGCATTTGCATTTCTTAGTTTCATTCCCTATTCAAAAATGTCTTAGGCAAATGTGTGGGAATGAACATGCACTTTAAAATTATGGGACCTAGTAgatttaatggaatgagccctggattgggagccaggggacctggctttgaatggtcccaacccaggcacttattTACCTTAGTTTCTTCACTTATAAAATTAAACACAccatctactgatgaatggataaacaaaatgtgatatatccacagaagggaatcttgttcagctgtgagaaggaatgaagtatggacatgtgctataatgtggatgtgcgttaaagacattatgctaagtgaaagaagccagacacaaagaccatacatttcacgattccacttacatgaaatgtacagaatagctaaatctaaggacataaagtaggttagctaatgggtacaggtttcattctgggttgatgaaatgttccaaaattgattgtgctgatggttgtatttaaaactctgcatatactgaaaaccatttaattgtacattttaaatgagtgaattgtatgctatgtgaattatatctcaataaagttgttcaaaaaAAAGAGAAAAAAATGAAACAGTGATTTCCACCCAGCCCAGATATGTTGTGAAGCTCAAATGAATTGTTTTTACAAATAAGAAAACCACTTAAAACTATACAATGAAAATTATTTTTAAACTTAATTATTTCTTAAATTCGAGGCTGATATACTAAAGGAATTTTTCCAGTGACAGTT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG050804]]
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[[Category:Intergenic]][[Category:NONHSAG050804]][[Category:Transcripts]]

Latest revision as of 07:04, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT127815

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1057 nt

Genomic location

chr8+:95993136..96001576

Exon number

2

Exons

95993136..95993201,96000586..96001576

Genome context

Sequence
000001 gaggaacggc acatgaccca ggcctatgcc aatcagcatt tcacattcct catggttggt tcaaagCTCC CACAGGCCCA 000080
000081 TTCTGGTGAC TCATGACTTG TATACACAGA ACAACAGAGA AAAGAAAAAT AGAATTAGAT AAACAAGCAG GGGCAACAGT 000160
000161 GAGGGCTATG TCTTACAAAG AACCATTTTT AATTGAATTC ATTTTCTCTC TTGAAATTCT TTTTTTTTTC CCTCAAAAGT 000240
000241 GGGAAAAAAT TCTCAAATAA CAACAGCAAA CCAAGAAAGC AGCTTAGTCT GCACTGCATT TGCATTTCTT AGTTTCATTC 000320
000321 CCTATTCAAA AATGTCTTAG GCAAATGTGT GGGAATGAAC ATGCACTTTA AAATTATGGG ACCTAGTAga tttaatggaa 000400
000401 tgagccctgg attgggagcc aggggacctg gctttgaatg gtcccaaccc aggcacttat tTACCTTAGT TTCTTCACTT 000480
000481 ATAAAATTAA ACACAccatc tactgatgaa tggataaaca aaatgtgata tatccacaga agggaatctt gttcagctgt 000560
000561 gagaaggaat gaagtatgga catgtgctat aatgtggatg tgcgttaaag acattatgct aagtgaaaga agccagacac 000640
000641 aaagaccata catttcacga ttccacttac atgaaatgta cagaatagct aaatctaagg acataaagta ggttagctaa 000720
000721 tgggtacagg tttcattctg ggttgatgaa atgttccaaa attgattgtg ctgatggttg tatttaaaac tctgcatata 000800
000801 ctgaaaacca tttaattgta cattttaaat gagtgaattg tatgctatgt gaattatatc tcaataaagt tgttcaaaaa 000880
000881 AAAGAGAAAA AAATGAAACA GTGATTTCCA CCCAGCCCAG ATATGTTGTG AAGCTCAAAT GAATTGTTTT TACAAATAAG 000960
000961 AAAACCACTT AAAACTATAC AATGAAAATT ATTTTTAAAC TTAATTATTT CTTAAATTCG AGGCTGATAT ACTAAAGGAA 001040
001041 TTTTTCCAGT GACAGTT
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Predicted Small Protein

Name NONHSAT127815_smProtein_92:259
Length 56
Molecular weight 6651.8586
Aromaticity 0.145454545455
Instability index 66.0272727273
Isoelectric point 9.30084228516
Runs 11
Runs residual 0.0484848484848
Runs probability 0.031162178221
Amino acid sequence MTCIHRTTEKRKIELDKQAGATVRAMSYKEPFLIEFIFSLEILFFFPQKWEKILK
Secondary structure LEEELLLLHHHHHHHHHHLLLEEELLLLLLLHHHHHHHHHHHHHHLHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL
PiMo oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii