Difference between revisions of "NONHSAT128376"

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sequence = <dnaseq>AGTTGTATGTAAGAAAATATGAGATACAATGGATCAAAATGAGTTCTCCAGAGAGGCACCAAAATTTACTATGGGAGCATGGAGGACAATGAGATGATCTCTGCCTGGGGATGGGGGCACATTGATGGAAGTGAGCAGGCGATCTGAGTGCAGAGGCACAGAAGTCATCAGGCGGAGGCTGGGAAGCAGGGCTCTCCCAGGTAGTAAGAACATCCTGCTTAAAAGCCCAGAAAGTAGGACAACAGGTCAGTAACTGAATTAGCCAAATATTCAGAAGAAGGCAGCATGCCCCAAATGTCTCCAGTCACAATTAAGCTACTGGCTTTCCTTCTGCATGGAACTGGGTTCGTTGCCAAACATTCCTGTCAAGTGAGggcagctacaaattcagcgtttccaatggaaaactcatgatttcctgctctgcttccaagatctgGGTATCAGAGATCCATATAGAAGCCCAGCTTCAGCAACTACCTGGTGGCAAGGAAGAAGAGTCCTCGACACAGACATCGTAGGTGAACTCCTCCAGAATGAGATCAACAGGATCAGAAATGCCCTTCCATTTCCATTAAGCCCCCCAGTTAAGAACACTGAATTGGAGTAAGGAATTAATGGGAGGAGACCTGTGAAAATTCCTATACACTGCTTGAGAAGAATGGCAGACCAACTAATTAACTCATCCAGTAATTTGTCATATTAAATTAT</dnaseq>|
 
sequence = <dnaseq>AGTTGTATGTAAGAAAATATGAGATACAATGGATCAAAATGAGTTCTCCAGAGAGGCACCAAAATTTACTATGGGAGCATGGAGGACAATGAGATGATCTCTGCCTGGGGATGGGGGCACATTGATGGAAGTGAGCAGGCGATCTGAGTGCAGAGGCACAGAAGTCATCAGGCGGAGGCTGGGAAGCAGGGCTCTCCCAGGTAGTAAGAACATCCTGCTTAAAAGCCCAGAAAGTAGGACAACAGGTCAGTAACTGAATTAGCCAAATATTCAGAAGAAGGCAGCATGCCCCAAATGTCTCCAGTCACAATTAAGCTACTGGCTTTCCTTCTGCATGGAACTGGGTTCGTTGCCAAACATTCCTGTCAAGTGAGggcagctacaaattcagcgtttccaatggaaaactcatgatttcctgctctgcttccaagatctgGGTATCAGAGATCCATATAGAAGCCCAGCTTCAGCAACTACCTGGTGGCAAGGAAGAAGAGTCCTCGACACAGACATCGTAGGTGAACTCCTCCAGAATGAGATCAACAGGATCAGAAATGCCCTTCCATTTCCATTAAGCCCCCCAGTTAAGAACACTGAATTGGAGTAAGGAATTAATGGGAGGAGACCTGTGAAAATTCCTATACACTGCTTGAGAAGAATGGCAGACCAACTAATTAACTCATCCAGTAATTTGTCATATTAAATTAT</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG051089]]
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[[Category:Intergenic]][[Category:NONHSAG051089]][[Category:Transcripts]]

Latest revision as of 07:06, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT128376

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

711 nt

Genomic location

chr8+:117616758..117627525

Exon number

4

Exons

117616758..117617001,117619032..117619161,117619690..117619754,117627254..117627525

Genome context

Sequence
000001 AGTTGTATGT AAGAAAATAT GAGATACAAT GGATCAAAAT GAGTTCTCCA GAGAGGCACC AAAATTTACT ATGGGAGCAT 000080
000081 GGAGGACAAT GAGATGATCT CTGCCTGGGG ATGGGGGCAC ATTGATGGAA GTGAGCAGGC GATCTGAGTG CAGAGGCACA 000160
000161 GAAGTCATCA GGCGGAGGCT GGGAAGCAGG GCTCTCCCAG GTAGTAAGAA CATCCTGCTT AAAAGCCCAG AAAGTAGGAC 000240
000241 AACAGGTCAG TAACTGAATT AGCCAAATAT TCAGAAGAAG GCAGCATGCC CCAAATGTCT CCAGTCACAA TTAAGCTACT 000320
000321 GGCTTTCCTT CTGCATGGAA CTGGGTTCGT TGCCAAACAT TCCTGTCAAG TGAGggcagc tacaaattca gcgtttccaa 000400
000401 tggaaaactc atgatttcct gctctgcttc caagatctgG GTATCAGAGA TCCATATAGA AGCCCAGCTT CAGCAACTAC 000480
000481 CTGGTGGCAA GGAAGAAGAG TCCTCGACAC AGACATCGTA GGTGAACTCC TCCAGAATGA GATCAACAGG ATCAGAAATG 000560
000561 CCCTTCCATT TCCATTAAGC CCCCCAGTTA AGAACACTGA ATTGGAGTAA GGAATTAATG GGAGGAGACC TGTGAAAATT 000640
000641 CCTATACACT GCTTGAGAAG AATGGCAGAC CAACTAATTA ACTCATCCAG TAATTTGTCA TATTAAATTA T
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Predicted Small Protein

Name NONHSAT128376_smProtein_410:520
Length 37
Molecular weight 3933.3339
Aromaticity 0.0277777777778
Instability index 100.141666667
Isoelectric point 4.63629150391
Runs 6
Runs residual 0.0137917637918
Runs probability 0.0441912500737
Amino acid sequence MISCSASKIWVSEIHIEAQLQQLPGGKEEESSTQTS
Secondary structure LEELLLLLEEEHHHHHHHHHHHLLLLLLLLLLLLLL
PRMN -
PiMo -