Difference between revisions of "NONHSAT130050"
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sequence = <dnaseq>ggaggtgatggctggagttccaacaggcacttggatcgtgagataacctcagaaagctgtttcccgagggtgctgaactggcaggaaagaaaccttggtcctcgatgatattgtgaagacaccatattagcatggatggcctatttctgaatttctttcaggcctgcttctctttaccttctgccatgagtggaagtggcctgaggccctcacctgaagccaagcagatgacagcaccaggcttcttgtatagcctgcagaaccGTTTGCAAATGAAATTCAAAAAATCGGCAGTGACTCTTCTTGGACCAGGTGGAGAGCAGGAAGAAGGCCGGCAGCAGGTGTGGCTCGGGCAGATTGGAGAGGCACAATGGGGCACGTTTGCTAGACAAatagagagacaggcacaaagagcttaagtgactaccctaaagttgctcagctattaaatgtggagccaggactaaatcccagcagtttggctctggggtctgggttctaaaATTGTCTCAATTCAGCCTCTCCAGCTGCCAAGTGTGAGACCTAGACAAGGGCTTTGAGTTTGACTGTAGGAGCCATCCCAGGCTTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCGTCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCACAGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCCTGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGGGATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCACCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAGCAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGTAGGATTGTCTTTCTGGAACCTTTTAAAAATGGAAACGATTTTTTTCTCCCCCATCCCATTTTCTGCCAGCAAATCCTATGGAAAAATACATGATTCAGTGTCAGGGTCAAAGATGATGGTCTCATAATGATATATAGCTTGCTCAGTAAGGGAATGGGTGTGTATGTGTTGGAGGGGACCACAGTGGTAAATGCTGAGTATGAGACATCTCCTGGGACTGTGAAACAGAGTAACAGTAAGATAGAAAGATAAAAAATAGGGAGGCAGGCTGAGTGGTTGTGGTGGAAGGGTAAGAGCTAGGTTAGCAAGATCATGCCCTCCGGATACAGGTAGCGCTGCCCTGTTTCCCTGGGGGCTGAATTCTCCAGGCCATGGACAAGAAGACCGACTGGAACTGTCCTTATGCCAGTGCTAAAAGTATAGTGTAGAAGAAAGGTGGTGTTTGGAAGGAAAAGAATAAAAAAGGGAAATTTTAATAACCAATAAAATGAGGAATC</dnaseq>| | sequence = <dnaseq>ggaggtgatggctggagttccaacaggcacttggatcgtgagataacctcagaaagctgtttcccgagggtgctgaactggcaggaaagaaaccttggtcctcgatgatattgtgaagacaccatattagcatggatggcctatttctgaatttctttcaggcctgcttctctttaccttctgccatgagtggaagtggcctgaggccctcacctgaagccaagcagatgacagcaccaggcttcttgtatagcctgcagaaccGTTTGCAAATGAAATTCAAAAAATCGGCAGTGACTCTTCTTGGACCAGGTGGAGAGCAGGAAGAAGGCCGGCAGCAGGTGTGGCTCGGGCAGATTGGAGAGGCACAATGGGGCACGTTTGCTAGACAAatagagagacaggcacaaagagcttaagtgactaccctaaagttgctcagctattaaatgtggagccaggactaaatcccagcagtttggctctggggtctgggttctaaaATTGTCTCAATTCAGCCTCTCCAGCTGCCAAGTGTGAGACCTAGACAAGGGCTTTGAGTTTGACTGTAGGAGCCATCCCAGGCTTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCGTCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCACAGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCCTGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGGGATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCACCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAGCAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGTAGGATTGTCTTTCTGGAACCTTTTAAAAATGGAAACGATTTTTTTCTCCCCCATCCCATTTTCTGCCAGCAAATCCTATGGAAAAATACATGATTCAGTGTCAGGGTCAAAGATGATGGTCTCATAATGATATATAGCTTGCTCAGTAAGGGAATGGGTGTGTATGTGTTGGAGGGGACCACAGTGGTAAATGCTGAGTATGAGACATCTCCTGGGACTGTGAAACAGAGTAACAGTAAGATAGAAAGATAAAAAATAGGGAGGCAGGCTGAGTGGTTGTGGTGGAAGGGTAAGAGCTAGGTTAGCAAGATCATGCCCTCCGGATACAGGTAGCGCTGCCCTGTTTCCCTGGGGGCTGAATTCTCCAGGCCATGGACAAGAAGACCGACTGGAACTGTCCTTATGCCAGTGCTAAAAGTATAGTGTAGAAGAAAGGTGGTGTTTGGAAGGAAAAGAATAAAAAAGGGAAATTTTAATAACCAATAAAATGAGGAATC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG051672]] | + | [[Category:Sense]][[Category:NONHSAG051672]][[Category:Transcripts]] |
Latest revision as of 07:12, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130050 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1569 nt |
Genomic location |
chr9-:4285539..4348392 |
Exon number |
5 |
Exons |
4285539..4286523,4308777..4308968,4310401..4310528,4347081..4347183,4348232..4348392 |
Genome context |
|
Sequence |
000001 ggaggtgatg gctggagttc caacaggcac ttggatcgtg agataacctc agaaagctgt ttcccgaggg tgctgaactg 000080
000081 gcaggaaaga aaccttggtc ctcgatgata ttgtgaagac accatattag catggatggc ctatttctga atttctttca 000160 000161 ggcctgcttc tctttacctt ctgccatgag tggaagtggc ctgaggccct cacctgaagc caagcagatg acagcaccag 000240 000241 gcttcttgta tagcctgcag aaccGTTTGC AAATGAAATT CAAAAAATCG GCAGTGACTC TTCTTGGACC AGGTGGAGAG 000320 000321 CAGGAAGAAG GCCGGCAGCA GGTGTGGCTC GGGCAGATTG GAGAGGCACA ATGGGGCACG TTTGCTAGAC AAatagagag 000400 000401 acaggcacaa agagcttaag tgactaccct aaagttgctc agctattaaa tgtggagcca ggactaaatc ccagcagttt 000480 000481 ggctctgggg tctgggttct aaaATTGTCT CAATTCAGCC TCTCCAGCTG CCAAGTGTGA GACCTAGACA AGGGCTTTGA 000560 000561 GTTTGACTGT AGGAGCCATC CCAGGCTTAT AACCCACACC ATGGATAACT TATTGGACTT TGCCTGAAAG GAGTCATTAG 000640 000641 TGACATTGGA TATTTGACCG TCTTGGCCAC AGGTTTTTCA GAATGAATGG AAGATCATGC AGCATGAGTC TCCACCGGAC 000720 000721 ATCGGGAACC CCACAGGGGC CTAGGATGGT CAGTGGTCAT CACATTCCTG CCATCCGAGC CCACTCCGGG ACTCCTGGCC 000800 000801 CCTCGCCCTG TGGCAGCACA TCGAGTCCCA CTATGGCAAG CCTTGCTAAC AACCTCCATC TCAAGATGCC CTCAGGAGGA 000880 000881 GGGATGGCTC CTCAGAACAA CGTGGCTGAG AGCCGCATCC ATCTGCCTGC CTTAAGCCCC AGGAGACAAA TGCTCACCAA 000960 000961 TGGGAAGCCG CGATTCCAGG TCACCCAGGC TGGAGGCATG TCAGGGTCAC ATACTTTAAA GCCAAAGCAG CAGGAGTTTG 001040 001041 GAAGCCCTTT TCCTCCAAAT CCTGGGAAAG GTAGGATTGT CTTTCTGGAA CCTTTTAAAA ATGGAAACGA TTTTTTTCTC 001120 001121 CCCCATCCCA TTTTCTGCCA GCAAATCCTA TGGAAAAATA CATGATTCAG TGTCAGGGTC AAAGATGATG GTCTCATAAT 001200 001201 GATATATAGC TTGCTCAGTA AGGGAATGGG TGTGTATGTG TTGGAGGGGA CCACAGTGGT AAATGCTGAG TATGAGACAT 001280 001281 CTCCTGGGAC TGTGAAACAG AGTAACAGTA AGATAGAAAG ATAAAAAATA GGGAGGCAGG CTGAGTGGTT GTGGTGGAAG 001360 001361 GGTAAGAGCT AGGTTAGCAA GATCATGCCC TCCGGATACA GGTAGCGCTG CCCTGTTTCC CTGGGGGCTG AATTCTCCAG 001440 001441 GCCATGGACA AGAAGACCGA CTGGAACTGT CCTTATGCCA GTGCTAAAAG TATAGTGTAG AAGAAAGGTG GTGTTTGGAA 001520 001521 GGAAAAGAAT AAAAAAGGGA AATTTTAATA ACCAATAAAA TGAGGAATC |
Predicted Small Protein
Name | NONHSAT130050_smProtein_131:418 |
Length | 96 |
Molecular weight | 10538.9296 |
Aromaticity | 0.105263157895 |
Instability index | 62.5063157895 |
Isoelectric point | 9.50897216797 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0439240145123 |
Amino acid sequence | MDGLFLNFFQACFSLPSAMSGSGLRPSPEAKQMTAPGFLYSLQNRLQMKFKKSAVTLLGP GGEQEEGRQQVWLGQIGEAQWGTFARQIERQAQRA |
Secondary structure | LLHHHHHHHHHHHLLLLLLLLLLLLLLHHHHLLLLLLHHHHHHHHHHHHHHLLEEEEELL LLLLLLLLEEEEELLLLHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |