Difference between revisions of "NONHSAT130050"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>ggaggtgatggctggagttccaacaggcacttggatcgtgagataacctcagaaagctgtttcccgagggtgctgaactggcaggaaagaaaccttggtcctcgatgatattgtgaagacaccatattagcatggatggcctatttctgaatttctttcaggcctgcttctctttaccttctgccatgagtggaagtggcctgaggccctcacctgaagccaagcagatgacagcaccaggcttcttgtatagcctgcagaaccGTTTGCAAATGAAATTCAAAAAATCGGCAGTGACTCTTCTTGGACCAGGTGGAGAGCAGGAAGAAGGCCGGCAGCAGGTGTGGCTCGGGCAGATTGGAGAGGCACAATGGGGCACGTTTGCTAGACAAatagagagacaggcacaaagagcttaagtgactaccctaaagttgctcagctattaaatgtggagccaggactaaatcccagcagtttggctctggggtctgggttctaaaATTGTCTCAATTCAGCCTCTCCAGCTGCCAAGTGTGAGACCTAGACAAGGGCTTTGAGTTTGACTGTAGGAGCCATCCCAGGCTTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCGTCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCACAGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCCTGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGGGATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCACCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAGCAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGTAGGATTGTCTTTCTGGAACCTTTTAAAAATGGAAACGATTTTTTTCTCCCCCATCCCATTTTCTGCCAGCAAATCCTATGGAAAAATACATGATTCAGTGTCAGGGTCAAAGATGATGGTCTCATAATGATATATAGCTTGCTCAGTAAGGGAATGGGTGTGTATGTGTTGGAGGGGACCACAGTGGTAAATGCTGAGTATGAGACATCTCCTGGGACTGTGAAACAGAGTAACAGTAAGATAGAAAGATAAAAAATAGGGAGGCAGGCTGAGTGGTTGTGGTGGAAGGGTAAGAGCTAGGTTAGCAAGATCATGCCCTCCGGATACAGGTAGCGCTGCCCTGTTTCCCTGGGGGCTGAATTCTCCAGGCCATGGACAAGAAGACCGACTGGAACTGTCCTTATGCCAGTGCTAAAAGTATAGTGTAGAAGAAAGGTGGTGTTTGGAAGGAAAAGAATAAAAAAGGGAAATTTTAATAACCAATAAAATGAGGAATC</dnaseq>|
 
sequence = <dnaseq>ggaggtgatggctggagttccaacaggcacttggatcgtgagataacctcagaaagctgtttcccgagggtgctgaactggcaggaaagaaaccttggtcctcgatgatattgtgaagacaccatattagcatggatggcctatttctgaatttctttcaggcctgcttctctttaccttctgccatgagtggaagtggcctgaggccctcacctgaagccaagcagatgacagcaccaggcttcttgtatagcctgcagaaccGTTTGCAAATGAAATTCAAAAAATCGGCAGTGACTCTTCTTGGACCAGGTGGAGAGCAGGAAGAAGGCCGGCAGCAGGTGTGGCTCGGGCAGATTGGAGAGGCACAATGGGGCACGTTTGCTAGACAAatagagagacaggcacaaagagcttaagtgactaccctaaagttgctcagctattaaatgtggagccaggactaaatcccagcagtttggctctggggtctgggttctaaaATTGTCTCAATTCAGCCTCTCCAGCTGCCAAGTGTGAGACCTAGACAAGGGCTTTGAGTTTGACTGTAGGAGCCATCCCAGGCTTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCGTCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCACAGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCCTGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGGGATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCACCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAGCAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGTAGGATTGTCTTTCTGGAACCTTTTAAAAATGGAAACGATTTTTTTCTCCCCCATCCCATTTTCTGCCAGCAAATCCTATGGAAAAATACATGATTCAGTGTCAGGGTCAAAGATGATGGTCTCATAATGATATATAGCTTGCTCAGTAAGGGAATGGGTGTGTATGTGTTGGAGGGGACCACAGTGGTAAATGCTGAGTATGAGACATCTCCTGGGACTGTGAAACAGAGTAACAGTAAGATAGAAAGATAAAAAATAGGGAGGCAGGCTGAGTGGTTGTGGTGGAAGGGTAAGAGCTAGGTTAGCAAGATCATGCCCTCCGGATACAGGTAGCGCTGCCCTGTTTCCCTGGGGGCTGAATTCTCCAGGCCATGGACAAGAAGACCGACTGGAACTGTCCTTATGCCAGTGCTAAAAGTATAGTGTAGAAGAAAGGTGGTGTTTGGAAGGAAAAGAATAAAAAAGGGAAATTTTAATAACCAATAAAATGAGGAATC</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG051672]]
+
[[Category:Sense]][[Category:NONHSAG051672]][[Category:Transcripts]]

Latest revision as of 07:12, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130050

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1569 nt

Genomic location

chr9-:4285539..4348392

Exon number

5

Exons

4285539..4286523,4308777..4308968,4310401..4310528,4347081..4347183,4348232..4348392

Genome context

Sequence
000001 ggaggtgatg gctggagttc caacaggcac ttggatcgtg agataacctc agaaagctgt ttcccgaggg tgctgaactg 000080
000081 gcaggaaaga aaccttggtc ctcgatgata ttgtgaagac accatattag catggatggc ctatttctga atttctttca 000160
000161 ggcctgcttc tctttacctt ctgccatgag tggaagtggc ctgaggccct cacctgaagc caagcagatg acagcaccag 000240
000241 gcttcttgta tagcctgcag aaccGTTTGC AAATGAAATT CAAAAAATCG GCAGTGACTC TTCTTGGACC AGGTGGAGAG 000320
000321 CAGGAAGAAG GCCGGCAGCA GGTGTGGCTC GGGCAGATTG GAGAGGCACA ATGGGGCACG TTTGCTAGAC AAatagagag 000400
000401 acaggcacaa agagcttaag tgactaccct aaagttgctc agctattaaa tgtggagcca ggactaaatc ccagcagttt 000480
000481 ggctctgggg tctgggttct aaaATTGTCT CAATTCAGCC TCTCCAGCTG CCAAGTGTGA GACCTAGACA AGGGCTTTGA 000560
000561 GTTTGACTGT AGGAGCCATC CCAGGCTTAT AACCCACACC ATGGATAACT TATTGGACTT TGCCTGAAAG GAGTCATTAG 000640
000641 TGACATTGGA TATTTGACCG TCTTGGCCAC AGGTTTTTCA GAATGAATGG AAGATCATGC AGCATGAGTC TCCACCGGAC 000720
000721 ATCGGGAACC CCACAGGGGC CTAGGATGGT CAGTGGTCAT CACATTCCTG CCATCCGAGC CCACTCCGGG ACTCCTGGCC 000800
000801 CCTCGCCCTG TGGCAGCACA TCGAGTCCCA CTATGGCAAG CCTTGCTAAC AACCTCCATC TCAAGATGCC CTCAGGAGGA 000880
000881 GGGATGGCTC CTCAGAACAA CGTGGCTGAG AGCCGCATCC ATCTGCCTGC CTTAAGCCCC AGGAGACAAA TGCTCACCAA 000960
000961 TGGGAAGCCG CGATTCCAGG TCACCCAGGC TGGAGGCATG TCAGGGTCAC ATACTTTAAA GCCAAAGCAG CAGGAGTTTG 001040
001041 GAAGCCCTTT TCCTCCAAAT CCTGGGAAAG GTAGGATTGT CTTTCTGGAA CCTTTTAAAA ATGGAAACGA TTTTTTTCTC 001120
001121 CCCCATCCCA TTTTCTGCCA GCAAATCCTA TGGAAAAATA CATGATTCAG TGTCAGGGTC AAAGATGATG GTCTCATAAT 001200
001201 GATATATAGC TTGCTCAGTA AGGGAATGGG TGTGTATGTG TTGGAGGGGA CCACAGTGGT AAATGCTGAG TATGAGACAT 001280
001281 CTCCTGGGAC TGTGAAACAG AGTAACAGTA AGATAGAAAG ATAAAAAATA GGGAGGCAGG CTGAGTGGTT GTGGTGGAAG 001360
001361 GGTAAGAGCT AGGTTAGCAA GATCATGCCC TCCGGATACA GGTAGCGCTG CCCTGTTTCC CTGGGGGCTG AATTCTCCAG 001440
001441 GCCATGGACA AGAAGACCGA CTGGAACTGT CCTTATGCCA GTGCTAAAAG TATAGTGTAG AAGAAAGGTG GTGTTTGGAA 001520
001521 GGAAAAGAAT AAAAAAGGGA AATTTTAATA ACCAATAAAA TGAGGAATC
[back to top]

Predicted Small Protein

Name NONHSAT130050_smProtein_131:418
Length 96
Molecular weight 10538.9296
Aromaticity 0.105263157895
Instability index 62.5063157895
Isoelectric point 9.50897216797
Runs 13
Runs residual 0.00779113137174
Runs probability 0.0439240145123
Amino acid sequence MDGLFLNFFQACFSLPSAMSGSGLRPSPEAKQMTAPGFLYSLQNRLQMKFKKSAVTLLGP
GGEQEEGRQQVWLGQIGEAQWGTFARQIERQAQRA
Secondary structure LLHHHHHHHHHHHLLLLLLLLLLLLLLHHHHLLLLLLHHHHHHHHHHHHHHLLEEEEELL
LLLLLLLLEEEEELLLLHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -