Difference between revisions of "NONHSAT035888"

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sequence = <dnaseq>ctccctccttccttccctcccttcctccctctctccctccctcccAGCTCCTGCACCAGGAAACGGCCCGGATCCCGGCAGCGGCCTGACCCGGCTCCACGCTGGCCAGGAGGATGAAAGGCCCCAGCTGGGGGCTCCTTGCCACCAGTGCTGTGTCTTAAGAGCTGCCATCCCGGCTGGGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAAAAAAAGTGTGTATTAGGAGGAGAGAGAGGaaaaaaagaggaaagaaggaaaaaaaaaagaattaaaaaaaaaaaaaagaaaaaCAGAAGATGACCTTGATGGaaaaaaaatattttttaaaaaaaaGATATACTGTGGAAGGGGGGAGAATCCCATAACTAACTGCTGAGGAGGGACCTGCTTTGGGGAGTAGGGGAAGGCCCAGGGAGTGGGGCAGGGGGCTGCTTATTCACTCTGGGGATTCGCCATGGACACGTCTCAACTGCGCAAGCTGCTGCCCATGTTTCCCTGCCCCACTTCACCCCCTTGGGGGCTGCTCAAGGGTAGGTGGGCGTGGGTGGTAGGAGGTTTTTTTTTTTACCCAGGGCTCTGGAAGGACACCAAACTGTTCTGCTTGTTACCTTCCCTCCGTCTTCTCCTCGCCTTTCACAGTCCCCTCCTGCCTGCTCCTGTCCAGCCAGGTCTACCACCCACCCCACCCCTCTTCTCCGGCTCCCTGCCCCTCCAGATTGCCTGGTGATCTATTTTGTTTCCTTTTGTGTTTCTTTTTCTGTTTTGAGTGTCTTTCTTTGCAGGTTTCTGTAGCCGGAAGATCTCCGTTCCGCTCCCAGCGGCTCCAGTGTAAATTCCCCTTCCCCCTGGGGAAATGCACTACCTTGTTTTGGGGGGTTTAGGGGTGtttttgtttttcagttgttttgtttttttgttttttttttttttcctttgccttttttcccttttatttGGAGGGAATGGGAGGAAGTGGGAACAGGGAGGTGGGAGGTGGATTTTGTTTATTTTTTTAGCTCATTTCCAGGGGTGGGAATTTTTTTTTAATATGTGTCATGAATAAAGTTGTTTTTGAAAAT</dnaseq>|
 
sequence = <dnaseq>ctccctccttccttccctcccttcctccctctctccctccctcccAGCTCCTGCACCAGGAAACGGCCCGGATCCCGGCAGCGGCCTGACCCGGCTCCACGCTGGCCAGGAGGATGAAAGGCCCCAGCTGGGGGCTCCTTGCCACCAGTGCTGTGTCTTAAGAGCTGCCATCCCGGCTGGGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAAAAAAAGTGTGTATTAGGAGGAGAGAGAGGaaaaaaagaggaaagaaggaaaaaaaaaagaattaaaaaaaaaaaaaagaaaaaCAGAAGATGACCTTGATGGaaaaaaaatattttttaaaaaaaaGATATACTGTGGAAGGGGGGAGAATCCCATAACTAACTGCTGAGGAGGGACCTGCTTTGGGGAGTAGGGGAAGGCCCAGGGAGTGGGGCAGGGGGCTGCTTATTCACTCTGGGGATTCGCCATGGACACGTCTCAACTGCGCAAGCTGCTGCCCATGTTTCCCTGCCCCACTTCACCCCCTTGGGGGCTGCTCAAGGGTAGGTGGGCGTGGGTGGTAGGAGGTTTTTTTTTTTACCCAGGGCTCTGGAAGGACACCAAACTGTTCTGCTTGTTACCTTCCCTCCGTCTTCTCCTCGCCTTTCACAGTCCCCTCCTGCCTGCTCCTGTCCAGCCAGGTCTACCACCCACCCCACCCCTCTTCTCCGGCTCCCTGCCCCTCCAGATTGCCTGGTGATCTATTTTGTTTCCTTTTGTGTTTCTTTTTCTGTTTTGAGTGTCTTTCTTTGCAGGTTTCTGTAGCCGGAAGATCTCCGTTCCGCTCCCAGCGGCTCCAGTGTAAATTCCCCTTCCCCCTGGGGAAATGCACTACCTTGTTTTGGGGGGTTTAGGGGTGtttttgtttttcagttgttttgtttttttgttttttttttttttcctttgccttttttcccttttatttGGAGGGAATGGGAGGAAGTGGGAACAGGGAGGTGGGAGGTGGATTTTGTTTATTTTTTTAGCTCATTTCCAGGGGTGGGAATTTTTTTTTAATATGTGTCATGAATAAAGTTGTTTTTGAAAAT</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG014490]]
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[[Category:Sense]][[Category:NONHSAG014490]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 21:33, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT035888

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1092 nt

Genomic location

chr14+:23776012..23795367

Exon number

3

Exons

23776012..23776103,23776401..23776488,23794456..23795367

Genome context

Sequence
000001 ctccctcctt ccttccctcc cttcctccct ctctccctcc ctcccAGCTC CTGCACCAGG AAACGGCCCG GATCCCGGCA 000080
000081 GCGGCCTGAC CCGGCTCCAC GCTGGCCAGG AGGATGAAAG GCCCCAGCTG GGGGCTCCTT GCCACCAGTG CTGTGTCTTA 000160
000161 AGAGCTGCCA TCCCGGCTGG GGGCCGGGCT AGAGCGACAT CATGGTATTC CCCTTACTAA AAAAAGTGTG TATTAGGAGG 000240
000241 AGAGAGAGGa aaaaaagagg aaagaaggaa aaaaaaaaga attaaaaaaa aaaaaaagaa aaaCAGAAGA TGACCTTGAT 000320
000321 GGaaaaaaaa tattttttaa aaaaaaGATA TACTGTGGAA GGGGGGAGAA TCCCATAACT AACTGCTGAG GAGGGACCTG 000400
000401 CTTTGGGGAG TAGGGGAAGG CCCAGGGAGT GGGGCAGGGG GCTGCTTATT CACTCTGGGG ATTCGCCATG GACACGTCTC 000480
000481 AACTGCGCAA GCTGCTGCCC ATGTTTCCCT GCCCCACTTC ACCCCCTTGG GGGCTGCTCA AGGGTAGGTG GGCGTGGGTG 000560
000561 GTAGGAGGTT TTTTTTTTTA CCCAGGGCTC TGGAAGGACA CCAAACTGTT CTGCTTGTTA CCTTCCCTCC GTCTTCTCCT 000640
000641 CGCCTTTCAC AGTCCCCTCC TGCCTGCTCC TGTCCAGCCA GGTCTACCAC CCACCCCACC CCTCTTCTCC GGCTCCCTGC 000720
000721 CCCTCCAGAT TGCCTGGTGA TCTATTTTGT TTCCTTTTGT GTTTCTTTTT CTGTTTTGAG TGTCTTTCTT TGCAGGTTTC 000800
000801 TGTAGCCGGA AGATCTCCGT TCCGCTCCCA GCGGCTCCAG TGTAAATTCC CCTTCCCCCT GGGGAAATGC ACTACCTTGT 000880
000881 TTTGGGGGGT TTAGGGGTGt ttttgttttt cagttgtttt gtttttttgt tttttttttt tttcctttgc cttttttccc 000960
000961 ttttatttGG AGGGAATGGG AGGAAGTGGG AACAGGGAGG TGGGAGGTGG ATTTTGTTTA TTTTTTTAGC TCATTTCCAG 001040
001041 GGGTGGGAAT TTTTTTTTAA TATGTGTCAT GAATAAAGTT GTTTTTGAAA AT
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Predicted Small Protein

Name NONHSAT035888_smProtein_467:739
Length 91
Molecular weight 10069.0187
Aromaticity 0.144444444444
Instability index 65.4778888889
Isoelectric point 9.89642333984
Runs 13
Runs residual 0.00458553791887
Runs probability 0.0397388338565
Amino acid sequence MDTSQLRKLLPMFPCPTSPPWGLLKGRWAWVVGGFFFYPGLWKDTKLFCLLPSLRLLLAF
HSPLLPAPVQPGLPPTPPLFSGSLPLQIAW
Secondary structure LLHHHHHHHLLLLLLLLLLLHHHLLLLEEEEELLEEELLLLLLLLLLLLLLHHHHHHHHH
HLLLLLLLLLLLLLLLLLLLLLLLLLLEEL
PRMN -
PiMo -