Difference between revisions of "NONHSAT108630"
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sequence = <dnaseq>tgggaatttaactgctggtttatgttcttccagagctccctctttgcccactagcagggcattagctggtgctgaagacagtggctgcttggcgagcctggatctccaagtgaccccctcagcaactcctgatgaacagGACTGAAGCCAATATTAAAGCAAGTCAACCAAAGGTTCTCTGGTGTAGACAAGACAGCAAAAGGACAGACTACCTTGTGGAACCTAGCATTGTTCTCCTTCTGCAGCACTAAGTAACATTTGTTCTCCGTTAAGATCTTTGCAAACCACACACAAGAATTGCTGGTCATCCTGCCAATAGATGCTGCTCACAGAACCAAATTTCCTGTGCTGAATTGTCACTCATGGGCTTGAGAGTAGGAGACTGGAGACCAAGGTGGCTAGAATCCAGTTGGGCCTGATGTCTCCCTGTTGAAAGGGCTCCTTGTGGAATGAATAGCACATGGCTCCTGTGGTGGATCTGATAGTGGCATAGCACCAAGTGATGCAGGCCTGCCAGGGGCCACAGACACAGAAGATGCTCCCGGGGTCCCCCATGTACTCCAGACACACTGCAGGCCACCTCTCCCAGCAGGTTGCCAGTCATGGGCCCCATCATCATGACTTCTGTCCAAGGTGTGCTCGGAAATCTCTTCCTTAACTGTGACTTTCTGACAGGTGGAGGATGTGGTCAGGAGTGGGAAAAGGATTCGAGACGGGAAGAGGGAGGGGTTCAGGATGAAGAGAGATAATCTGTGCCACAGATGCTGGCCCTGCAGTTAGCTCCCACCTAGTCCGTGCACACACATTCTAATCCCCTCCCATTCCTTTACATGCTGCGGCCAGAGAGGCCTTTCTCAAAGTGGAAGTCTCATCCTCACTTCTCTGGTTACAGTGCTGGGCCATGGTAACTTACAAGGCTTAGCAGGAACTGTCTGCGCACTCCCCCTTCCTGCCCACTACCTTGTTTCCCTCCAGTTGCGAGAGAAaacattgattgagcattaactatgtgccaggcttgtcctaagtcctttgcatgtattcactcaaacaatcctcacaacattcctatcacatctcccatttcacagtgagggttctaaagcacgtagtgggtgaggaacttgtccagggtcacacaactaagtgggggtggagaaacatcaaatctaggtggtccaggtggtggccagaacccatCAGCACCTCACTACAGCTGCCTCCAGTTTCTCGCTCTAGGAAATActcttccctgtcaactcctgttgtcctctgggctcagttgacatgtcatctccttgaggaggacatcctgagatgctccccgactagggtgggcacccacttccacactccAAAtgcctatttgacctgtgtatcgctgcatccccactgcctggcagatagcaggcccc</dnaseq>| | sequence = <dnaseq>tgggaatttaactgctggtttatgttcttccagagctccctctttgcccactagcagggcattagctggtgctgaagacagtggctgcttggcgagcctggatctccaagtgaccccctcagcaactcctgatgaacagGACTGAAGCCAATATTAAAGCAAGTCAACCAAAGGTTCTCTGGTGTAGACAAGACAGCAAAAGGACAGACTACCTTGTGGAACCTAGCATTGTTCTCCTTCTGCAGCACTAAGTAACATTTGTTCTCCGTTAAGATCTTTGCAAACCACACACAAGAATTGCTGGTCATCCTGCCAATAGATGCTGCTCACAGAACCAAATTTCCTGTGCTGAATTGTCACTCATGGGCTTGAGAGTAGGAGACTGGAGACCAAGGTGGCTAGAATCCAGTTGGGCCTGATGTCTCCCTGTTGAAAGGGCTCCTTGTGGAATGAATAGCACATGGCTCCTGTGGTGGATCTGATAGTGGCATAGCACCAAGTGATGCAGGCCTGCCAGGGGCCACAGACACAGAAGATGCTCCCGGGGTCCCCCATGTACTCCAGACACACTGCAGGCCACCTCTCCCAGCAGGTTGCCAGTCATGGGCCCCATCATCATGACTTCTGTCCAAGGTGTGCTCGGAAATCTCTTCCTTAACTGTGACTTTCTGACAGGTGGAGGATGTGGTCAGGAGTGGGAAAAGGATTCGAGACGGGAAGAGGGAGGGGTTCAGGATGAAGAGAGATAATCTGTGCCACAGATGCTGGCCCTGCAGTTAGCTCCCACCTAGTCCGTGCACACACATTCTAATCCCCTCCCATTCCTTTACATGCTGCGGCCAGAGAGGCCTTTCTCAAAGTGGAAGTCTCATCCTCACTTCTCTGGTTACAGTGCTGGGCCATGGTAACTTACAAGGCTTAGCAGGAACTGTCTGCGCACTCCCCCTTCCTGCCCACTACCTTGTTTCCCTCCAGTTGCGAGAGAAaacattgattgagcattaactatgtgccaggcttgtcctaagtcctttgcatgtattcactcaaacaatcctcacaacattcctatcacatctcccatttcacagtgagggttctaaagcacgtagtgggtgaggaacttgtccagggtcacacaactaagtgggggtggagaaacatcaaatctaggtggtccaggtggtggccagaacccatCAGCACCTCACTACAGCTGCCTCCAGTTTCTCGCTCTAGGAAATActcttccctgtcaactcctgttgtcctctgggctcagttgacatgtcatctccttgaggaggacatcctgagatgctccccgactagggtgggcacccacttccacactccAAAtgcctatttgacctgtgtatcgctgcatccccactgcctggcagatagcaggcccc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG043405]] | + | [[Category:Intergenic]][[Category:NONHSAG043405]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:48, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108630 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1415 nt |
Genomic location |
chr6-:30261466..30264047 |
Exon number |
2 |
Exons |
30261466..30262741,30263909..30264047 |
Genome context |
|
Sequence |
000001 tgggaattta actgctggtt tatgttcttc cagagctccc tctttgccca ctagcagggc attagctggt gctgaagaca 000080
000081 gtggctgctt ggcgagcctg gatctccaag tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC 000160 000161 AAGTCAACCA AAGGTTCTCT GGTGTAGACA AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC 000240 000241 TGCAGCACTA AGTAACATTT GTTCTCCGTT AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA 000320 000321 TGCTGCTCAC AGAACCAAAT TTCCTGTGCT GAATTGTCAC TCATGGGCTT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT 000400 000401 AGAATCCAGT TGGGCCTGAT GTCTCCCTGT TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT 000480 000481 GATAGTGGCA TAGCACCAAG TGATGCAGGC CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT 000560 000561 CCAGACACAC TGCAGGCCAC CTCTCCCAGC AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTGTGCT 000640 000641 CGGAAATCTC TTCCTTAACT GTGACTTTCT GACAGGTGGA GGATGTGGTC AGGAGTGGGA AAAGGATTCG AGACGGGAAG 000720 000721 AGGGAGGGGT TCAGGATGAA GAGAGATAAT CTGTGCCACA GATGCTGGCC CTGCAGTTAG CTCCCACCTA GTCCGTGCAC 000800 000801 ACACATTCTA ATCCCCTCCC ATTCCTTTAC ATGCTGCGGC CAGAGAGGCC TTTCTCAAAG TGGAAGTCTC ATCCTCACTT 000880 000881 CTCTGGTTAC AGTGCTGGGC CATGGTAACT TACAAGGCTT AGCAGGAACT GTCTGCGCAC TCCCCCTTCC TGCCCACTAC 000960 000961 CTTGTTTCCC TCCAGTTGCG AGAGAAaaca ttgattgagc attaactatg tgccaggctt gtcctaagtc ctttgcatgt 001040 001041 attcactcaa acaatcctca caacattcct atcacatctc ccatttcaca gtgagggttc taaagcacgt agtgggtgag 001120 001121 gaacttgtcc agggtcacac aactaagtgg gggtggagaa acatcaaatc taggtggtcc aggtggtggc cagaacccat 001200 001201 CAGCACCTCA CTACAGCTGC CTCCAGTTTC TCGCTCTAGG AAATActctt ccctgtcaac tcctgttgtc ctctgggctc 001280 001281 agttgacatg tcatctcctt gaggaggaca tcctgagatg ctccccgact agggtgggca cccacttcca cactccAAAt 001360 001361 gcctatttga cctgtgtatc gctgcatccc cactgcctgg cagatagcag gcccc |
Predicted Small Protein
Name | NONHSAT108630_smProtein_602:748 |
Length | 49 |
Molecular weight | 5259.7969 |
Aromaticity | 0.0625 |
Instability index | 53.64375 |
Isoelectric point | 4.25079345703 |
Runs | 10 |
Runs residual | 0.0427631578947 |
Runs probability | 0.0350998056881 |
Amino acid sequence | MGPIIMTSVQGVLGNLFLNCDFLTGGGCGQEWEKDSRREEGGVQDEER |
Secondary structure | LLLEEEEELLLHHHEEEELLLEELLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |