Difference between revisions of "NONHSAT013065"

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sequence = <dnaseq>GGGGGCGCTGTGCCTCGCCCGGAGCCTCACCCAGAGCCTTCTGGGGTGGTGGATAGGTGAGGACCTCATCGAGGTTTGAGACTTAAATACCTCTCTACTAAAAGGGAAATGGATAAAAAGATGCTGACTGCCAGGCTGGTTTCGGATCCTTTGTATTCTGTCAGATGAGAACACTTGTTTACCTTCCAGGACTGACCTGAGCATGAGTTTCTAAgaggcaacatcgtctcatgaaagcaggcctagaccagaagtaggaaaatctctcctcattcaaaggtcagcttgccatttgccagccatgctatcctcagcagcttctccttctgcaaagttgggataacaaaaaagtttccctccttgccaacctcctctggtgactgggataagcacacaagatgatgtacatcaagacacAACACTCCCAGCAAACAATGGCATCCCAGCGGACTCTTGTGGACTGCCTGCCACGTGATGGCTTTAGCTTCAATTCTACTGCCGATTCTGCTAAAGCGAGGGAGGAGTCGCAGACACTATTGAAATGAGGCTTTTAAggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggctggtggatcatgagatcaggagatcgagaccatcttggctaacatggtgaaaccccgtctctactaaaaacatacaaaaaaaaattcgccatgcatggtggcgggcgcctgtagtcccagctactcgggaggctgag</dnaseq>|
 
sequence = <dnaseq>GGGGGCGCTGTGCCTCGCCCGGAGCCTCACCCAGAGCCTTCTGGGGTGGTGGATAGGTGAGGACCTCATCGAGGTTTGAGACTTAAATACCTCTCTACTAAAAGGGAAATGGATAAAAAGATGCTGACTGCCAGGCTGGTTTCGGATCCTTTGTATTCTGTCAGATGAGAACACTTGTTTACCTTCCAGGACTGACCTGAGCATGAGTTTCTAAgaggcaacatcgtctcatgaaagcaggcctagaccagaagtaggaaaatctctcctcattcaaaggtcagcttgccatttgccagccatgctatcctcagcagcttctccttctgcaaagttgggataacaaaaaagtttccctccttgccaacctcctctggtgactgggataagcacacaagatgatgtacatcaagacacAACACTCCCAGCAAACAATGGCATCCCAGCGGACTCTTGTGGACTGCCTGCCACGTGATGGCTTTAGCTTCAATTCTACTGCCGATTCTGCTAAAGCGAGGGAGGAGTCGCAGACACTATTGAAATGAGGCTTTTAAggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggctggtggatcatgagatcaggagatcgagaccatcttggctaacatggtgaaaccccgtctctactaaaaacatacaaaaaaaaattcgccatgcatggtggcgggcgcctgtagtcccagctactcgggaggctgag</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG005758]]
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[[Category:Intergenic]][[Category:NONHSAG005758]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:08, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT013065

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

744 nt

Genomic location

chr10-:45556875..45567068

Exon number

5

Exons

45556875..45557088,45557710..45558032,45560975..45561061,45561623..45561669,45566996..45567068

Genome context

Sequence
000001 GGGGGCGCTG TGCCTCGCCC GGAGCCTCAC CCAGAGCCTT CTGGGGTGGT GGATAGGTGA GGACCTCATC GAGGTTTGAG 000080
000081 ACTTAAATAC CTCTCTACTA AAAGGGAAAT GGATAAAAAG ATGCTGACTG CCAGGCTGGT TTCGGATCCT TTGTATTCTG 000160
000161 TCAGATGAGA ACACTTGTTT ACCTTCCAGG ACTGACCTGA GCATGAGTTT CTAAgaggca acatcgtctc atgaaagcag 000240
000241 gcctagacca gaagtaggaa aatctctcct cattcaaagg tcagcttgcc atttgccagc catgctatcc tcagcagctt 000320
000321 ctccttctgc aaagttggga taacaaaaaa gtttccctcc ttgccaacct cctctggtga ctgggataag cacacaagat 000400
000401 gatgtacatc aagacacAAC ACTCCCAGCA AACAATGGCA TCCCAGCGGA CTCTTGTGGA CTGCCTGCCA CGTGATGGCT 000480
000481 TTAGCTTCAA TTCTACTGCC GATTCTGCTA AAGCGAGGGA GGAGTCGCAG ACACTATTGA AATGAGGCTT TTAAggccag 000560
000561 gtgcggtggc tcatgcctgt aatcccagca ctttgggagg ccgaggctgg tggatcatga gatcaggaga tcgagaccat 000640
000641 cttggctaac atggtgaaac cccgtctcta ctaaaaacat acaaaaaaaa attcgccatg catggtggcg ggcgcctgta 000720
000721 gtcccagcta ctcgggaggc tgag
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Predicted Small Protein

Name NONHSAT013065_smProtein_398:544
Length 49
Molecular weight 5452.0995
Aromaticity 0.0625
Instability index 44.0083333333
Isoelectric point 7.94000244141
Runs 9
Runs residual 0.0219298245614
Runs probability 0.02114859958
Amino acid sequence MMYIKTQHSQQTMASQRTLVDCLPRDGFSFNSTADSAKAREESQTLLK
Secondary structure LEEEELLLLHHHHHHHHHHHHHLLLLLLEELLHHHHHHHHHHHHHHLL
PRMN -
PiMo -