Difference between revisions of "NONHSAT067054"
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sequence = <dnaseq>gaggcaggagaattgcttgcatctgggaggcggaggttgcggtgagccgagattgtgccattgcactccagcctgggcaacaagagtgaaacttatctcaaaaaaagtaaaaataaaaataataaaaaaTAAAAGTTGGGAAATATGACTACCTGAAAATGCATGAAAATGTACATATACAttttttttttcgagatggagttttgttcttgttgcccaagctggagtgcagtggcgtgatctccgcttactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgagattacaggcacctgccaccacgacatttcaaagttaataaagtgatcacccttatacccaccatccaagcccgtaaacagctcatcattaaacaccaggcaattcacgtctgtgcctcacagacgacatctccagccccaagaggaaaccgccatggttcattttgtatcattcgcccccctcgctcatctttatgtttgcagctatgcagaaatccccaaataccctgttttctagtttcgatgatgtttatgctgcgtatgatggcatggcatagaatatttctttgtgccttgcttctttcAGGAAAAGAAAAGCTAAGCAGGTAGGGTGCAGGTGGCATTCATTCTTTCTTAGTTATATTCATTCCAGAGACCCTGGATCTGTATCTCACTTTAGAGATTATAAACATGCTGCTAACACCAATTTTGCAAAGCCCTCCCAATGAGCATTTTATGAAAGTCATTCTTggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcagggttcaagaccagcctggccaatgtggtgaaaccccgtctctactaaaaatacaaaaattagtcaggcatggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaattatttgagcccaagaggcg</dnaseq>| | sequence = <dnaseq>gaggcaggagaattgcttgcatctgggaggcggaggttgcggtgagccgagattgtgccattgcactccagcctgggcaacaagagtgaaacttatctcaaaaaaagtaaaaataaaaataataaaaaaTAAAAGTTGGGAAATATGACTACCTGAAAATGCATGAAAATGTACATATACAttttttttttcgagatggagttttgttcttgttgcccaagctggagtgcagtggcgtgatctccgcttactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgagattacaggcacctgccaccacgacatttcaaagttaataaagtgatcacccttatacccaccatccaagcccgtaaacagctcatcattaaacaccaggcaattcacgtctgtgcctcacagacgacatctccagccccaagaggaaaccgccatggttcattttgtatcattcgcccccctcgctcatctttatgtttgcagctatgcagaaatccccaaataccctgttttctagtttcgatgatgtttatgctgcgtatgatggcatggcatagaatatttctttgtgccttgcttctttcAGGAAAAGAAAAGCTAAGCAGGTAGGGTGCAGGTGGCATTCATTCTTTCTTAGTTATATTCATTCCAGAGACCCTGGATCTGTATCTCACTTTAGAGATTATAAACATGCTGCTAACACCAATTTTGCAAAGCCCTCCCAATGAGCATTTTATGAAAGTCATTCTTggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcagggttcaagaccagcctggccaatgtggtgaaaccccgtctctactaaaaatacaaaaattagtcaggcatggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaattatttgagcccaagaggcg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG026162]] | + | [[Category:Intergenic]][[Category:NONHSAG026162]][[Category:Transcripts]] |
Latest revision as of 23:00, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT067054 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
995 nt |
| Genomic location |
chr19+:48792177..48793171 |
| Exon number |
1 |
| Exons |
48792177..48793171 |
| Genome context |
|
| Sequence |
000001 gaggcaggag aattgcttgc atctgggagg cggaggttgc ggtgagccga gattgtgcca ttgcactcca gcctgggcaa 000080
000081 caagagtgaa acttatctca aaaaaagtaa aaataaaaat aataaaaaaT AAAAGTTGGG AAATATGACT ACCTGAAAAT 000160 000161 GCATGAAAAT GTACATATAC Attttttttt tcgagatgga gttttgttct tgttgcccaa gctggagtgc agtggcgtga 000240 000241 tctccgctta ctgcaacctc tgcctcccag gttcaagtga ttctcctgcc tcagcctcct gagtagctga gattacaggc 000320 000321 acctgccacc acgacatttc aaagttaata aagtgatcac ccttataccc accatccaag cccgtaaaca gctcatcatt 000400 000401 aaacaccagg caattcacgt ctgtgcctca cagacgacat ctccagcccc aagaggaaac cgccatggtt cattttgtat 000480 000481 cattcgcccc cctcgctcat ctttatgttt gcagctatgc agaaatcccc aaataccctg ttttctagtt tcgatgatgt 000560 000561 ttatgctgcg tatgatggca tggcatagaa tatttctttg tgccttgctt ctttcAGGAA AAGAAAAGCT AAGCAGGTAG 000640 000641 GGTGCAGGTG GCATTCATTC TTTCTTAGTT ATATTCATTC CAGAGACCCT GGATCTGTAT CTCACTTTAG AGATTATAAA 000720 000721 CATGCTGCTA ACACCAATTT TGCAAAGCCC TCCCAATGAG CATTTTATGA AAGTCATTCT Tggccgggcg tggtggctca 000800 000801 cgcctgtaat cccagcactt tgggaggccg aggcaggtgg atcacttgag gtcagggttc aagaccagcc tggccaatgt 000880 000881 ggtgaaaccc cgtctctact aaaaatacaa aaattagtca ggcatggtgg catgcacctg tagtcccagc tactcaggag 000960 000961 gctgaggcag gagaattatt tgagcccaag aggcg |
Predicted Small Protein
| Name | NONHSAT067054_smProtein_158:301 |
| Length | 48 |
| Molecular weight | 5110.8204 |
| Aromaticity | 0.106382978723 |
| Instability index | 73.2212765957 |
| Isoelectric point | 5.73724365234 |
| Runs | 8 |
| Runs residual | 0.00393617021277 |
| Runs probability | 0.0405515809927 |
| Amino acid sequence | MHENVHIHFFFRDGVLFLLPKLECSGVISAYCNLCLPGSSDSPASAS |
| Secondary structure | LLLLEEEEEEELLLEEEELLLLLLLLEEHHHHLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
