Difference between revisions of "NONHSAT112171"

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sequence = <dnaseq>AAAGCAAGCCTACAAAAGGGAGTAGTCGGTTTCGAGCCTGACGGTGGAGCTGACGCGGGAATGAGAGAGAACCTGAGAAGACCGCCAGGGCGCCCTCCCTGCGGAggcgagtccctcaccgcccctctacatcgtccttttcaataaggagctcttaatacctgcaactgcttccttcaaggggtggctggaagatcaGTAGGCAAGGCCTGCGGACTGCGCACCTTAAAGCGCTTCGGGACCGTAAGACAGTGAGTGCTGAGCGCGCGGCCGGGAAGAAGCCTGGAGGCTCTGAGCTCGGAGGACAGAGACCGAAGCCCCAGGGCCTGCGTCCCTCACAACCTGCGCCTCCTGTCCTCCCGCGCTACTCCCGAAGCGCACCTTCTCGCCCGCAGGCCGCAGAAGTGATGACGCAAAGCCCTCGGGGCCTCCGCCACCTCCTCACGCTTCTGCTGGACCGAATCCTTGGAATGGACAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTTGGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACACGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAGGTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTGAGCACGCACAGCGTGACACGGTCTGTCACTCTAGACAACCGGGCCTGGCCTGCGCACTGCCTCTTGGCCCTGCCAGAACTTCACCTCTCAAGAGGACAAGGGCAGCCCTGTGCTTGGGCACCATGTGGGATATTCCCTTTGCCCCTCCACCCCAGCTCCCCCAACTCACCTGTCACACATCATTGTCTAGGGCATGCAACACAGCCTGGCCTGGCCGCTGACAGCTGTTTACGCTCACTTTTGTTTACGCTGTCTTTGCAGAGGGAAAGCTGCCATAAGAAACAGTGGCATCCTTATGCTGAGGAGTTAGGCCCAGCTTCACTTTGGCTGCTGTAGTAATCCTCTGCACTAGCTGGGAAAGCCCTGCCAGTGACTTGTATTAGCTTTCTAGTCCACTGAGGTAATTGTATTTATTTCTTCTCTGTGACTCAGTCATTTGGAAAATTAACCTCAGTGGGCTATGACAA</dnaseq>|
 
sequence = <dnaseq>AAAGCAAGCCTACAAAAGGGAGTAGTCGGTTTCGAGCCTGACGGTGGAGCTGACGCGGGAATGAGAGAGAACCTGAGAAGACCGCCAGGGCGCCCTCCCTGCGGAggcgagtccctcaccgcccctctacatcgtccttttcaataaggagctcttaatacctgcaactgcttccttcaaggggtggctggaagatcaGTAGGCAAGGCCTGCGGACTGCGCACCTTAAAGCGCTTCGGGACCGTAAGACAGTGAGTGCTGAGCGCGCGGCCGGGAAGAAGCCTGGAGGCTCTGAGCTCGGAGGACAGAGACCGAAGCCCCAGGGCCTGCGTCCCTCACAACCTGCGCCTCCTGTCCTCCCGCGCTACTCCCGAAGCGCACCTTCTCGCCCGCAGGCCGCAGAAGTGATGACGCAAAGCCCTCGGGGCCTCCGCCACCTCCTCACGCTTCTGCTGGACCGAATCCTTGGAATGGACAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTTGGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACACGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAGGTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTGAGCACGCACAGCGTGACACGGTCTGTCACTCTAGACAACCGGGCCTGGCCTGCGCACTGCCTCTTGGCCCTGCCAGAACTTCACCTCTCAAGAGGACAAGGGCAGCCCTGTGCTTGGGCACCATGTGGGATATTCCCTTTGCCCCTCCACCCCAGCTCCCCCAACTCACCTGTCACACATCATTGTCTAGGGCATGCAACACAGCCTGGCCTGGCCGCTGACAGCTGTTTACGCTCACTTTTGTTTACGCTGTCTTTGCAGAGGGAAAGCTGCCATAAGAAACAGTGGCATCCTTATGCTGAGGAGTTAGGCCCAGCTTCACTTTGGCTGCTGTAGTAATCCTCTGCACTAGCTGGGAAAGCCCTGCCAGTGACTTGTATTAGCTTTCTAGTCCACTGAGGTAATTGTATTTATTTCTTCTCTGTGACTCAGTCATTTGGAAAATTAACCTCAGTGGGCTATGACAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG043648]]
+
[[Category:Sense]][[Category:NONHSAG043648]][[Category:Transcripts]]

Latest revision as of 01:51, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT112171

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1476 nt

Genomic location

chr6+:35226686..35256092

Exon number

5

Exons

35226686..35227163,35248833..35249001,35253905..35253985,35254099..35254176,35255423..35256092

Genome context

Sequence
000001 AAAGCAAGCC TACAAAAGGG AGTAGTCGGT TTCGAGCCTG ACGGTGGAGC TGACGCGGGA ATGAGAGAGA ACCTGAGAAG 000080
000081 ACCGCCAGGG CGCCCTCCCT GCGGAggcga gtccctcacc gcccctctac atcgtccttt tcaataagga gctcttaata 000160
000161 cctgcaactg cttccttcaa ggggtggctg gaagatcaGT AGGCAAGGCC TGCGGACTGC GCACCTTAAA GCGCTTCGGG 000240
000241 ACCGTAAGAC AGTGAGTGCT GAGCGCGCGG CCGGGAAGAA GCCTGGAGGC TCTGAGCTCG GAGGACAGAG ACCGAAGCCC 000320
000321 CAGGGCCTGC GTCCCTCACA ACCTGCGCCT CCTGTCCTCC CGCGCTACTC CCGAAGCGCA CCTTCTCGCC CGCAGGCCGC 000400
000401 AGAAGTGATG ACGCAAAGCC CTCGGGGCCT CCGCCACCTC CTCACGCTTC TGCTGGACCG AATCCTTGGA ATGGACAGAT 000480
000481 TTGTGACCCA GAAGGAAATC TCTGACCTCA GCTGTGGCTC TTGGTGCTGG CCAGAAGCCA ACTTCATGTC TGAGTGCACG 000560
000561 AGCAGCAGTT TGCCATGGAG AGCTTGGGGC TGCACACGGT GACCCTTAGT GATGGGACAA CAGCCTACGT CCAGCAAGCT 000640
000641 GTCAAAGGAG AGAAGCTTCT TGAAGGGCAG GTGATCCAGC TCGAGGATGG GACCACCGCA TACATTCACC AGGTGACGGT 000720
000721 ACAGAAAGAA GCTCTCTCCT TTGAGGATGG TCAGCCTGTG CAGCTGGAAG ATGGCAGCAT GGCTTACATA CACCGCACAC 000800
000801 CCAGAGAAGG CTATGACCCC AGCACCCTGG AAGCCGTCCA ACTGGAAGAT GGCTCCACTG CCTACATTCA CCACCCTGTG 000880
000881 GCTGTGCCAT CGGAGAGCAC CATCCTGGCC GTACAGACAG AGGTGGGCTT GGAGGACCTG GCAGCAGAGG ATGATGAGGG 000960
000961 CTTCAGTGCA GACGCAGTGG TGGCCCTGGA GCAGTATGCC AGCAAGGTGA GCACGCACAG CGTGACACGG TCTGTCACTC 001040
001041 TAGACAACCG GGCCTGGCCT GCGCACTGCC TCTTGGCCCT GCCAGAACTT CACCTCTCAA GAGGACAAGG GCAGCCCTGT 001120
001121 GCTTGGGCAC CATGTGGGAT ATTCCCTTTG CCCCTCCACC CCAGCTCCCC CAACTCACCT GTCACACATC ATTGTCTAGG 001200
001201 GCATGCAACA CAGCCTGGCC TGGCCGCTGA CAGCTGTTTA CGCTCACTTT TGTTTACGCT GTCTTTGCAG AGGGAAAGCT 001280
001281 GCCATAAGAA ACAGTGGCAT CCTTATGCTG AGGAGTTAGG CCCAGCTTCA CTTTGGCTGC TGTAGTAATC CTCTGCACTA 001360
001361 GCTGGGAAAG CCCTGCCAGT GACTTGTATT AGCTTTCTAG TCCACTGAGG TAATTGTATT TATTTCTTCT CTGTGACTCA 001440
001441 GTCATTTGGA AAATTAACCT CAGTGGGCTA TGACAA
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Predicted Small Protein

Name NONHSAT112171_smProtein_746:1009
Length 88
Molecular weight 10635.3814
Aromaticity 0.172413793103
Instability index 62.7103448276
Isoelectric point 11.5689086914
Runs 9
Runs residual 0.0348111658456
Runs probability 0.037714184773
Amino acid sequence MVSLCSWKMAAWLTYTAHPEKAMTPAPWKPSNWKMAPLPTFTTLWLCHRRAPSWPYRQRW
AWRTWQQRMMRASVQTQWWPWSSMPAR
Secondary structure LLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLHHHHH
HHHHHHHHHHHHHHHLLEELLLLLLLL
PRMN -
PiMo -