Difference between revisions of "NONHSAT130939"
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sequence = <dnaseq>TCCTTAGGAAAAGCCTAAGATTAGAGATCCAGAACTCTTACACCTTCATTTTTCTGCAGGAGAAGTGAGATGTGAGGCTCCCAATAACAAATTGGACAAATTCTCAGGAATACTGACCTATAAGGGGAAAAACTACTTCCTGGACCATGACAAGCTGCTACTCTGAGGCTGCAACATCAGGAATACAGATTGGTGCTATGGCTTGGTGATCTACACTGGGCCAGATACCAAATTAATGCAGAATAGTGGAAAGTCCACTTTTAAACGAACACAGATAGACCATCTCATGAATGTCCTTGTACTCTGGGCATCGTGTGTTTTGTCCTAGCAGTTGGGCATGGCATTTGGCAGAACAAGAAATGCTACCACTTCCAGATTTTTCTGCCATGGGTAAAATATGTCTCTTCATCAGCTGTCTCTGCCATCCTCATATTCTGGTCCTACTTCATTATTCTCAATACCATGGTGCCCATTTCCCTCTATGTCAGTGTTGAAATAATAAGATTGGGCAACAGTTTATATATCAACTGGGATCGGAAGATGTTTTATGCACCAAGGAACACACCAGCACAGGTGATACTTATGACAAGGATGGACAGAGGGTGACGGTCTCTGAGACAGTTTATGAGACCTGGTTTATCACATGCTACAGTCTGGTCTACACTTCCCTCCCTGTCCTGTGCATGAGTCTGTTTGATCAGTAACCCATAAGGAAGCTCCTAGGCAGCCTGGCAGCAGACCTGGTGAGGGGAGAAGCCTCTACTCTGATGGAGATGGGACCTTCTATGGAGAGACCCTGAGCCTCCCTCCTTACCCTCGGGTGCTTCCAGGATGTGAATGAGACATGGAGCCTCCATTTCCCAGAGCTGTATGAGCCAGGCCAGCACAACCTCTATTTCAACAAGAAAGAATTTGTGAAGTGTTT</dnaseq>| | sequence = <dnaseq>TCCTTAGGAAAAGCCTAAGATTAGAGATCCAGAACTCTTACACCTTCATTTTTCTGCAGGAGAAGTGAGATGTGAGGCTCCCAATAACAAATTGGACAAATTCTCAGGAATACTGACCTATAAGGGGAAAAACTACTTCCTGGACCATGACAAGCTGCTACTCTGAGGCTGCAACATCAGGAATACAGATTGGTGCTATGGCTTGGTGATCTACACTGGGCCAGATACCAAATTAATGCAGAATAGTGGAAAGTCCACTTTTAAACGAACACAGATAGACCATCTCATGAATGTCCTTGTACTCTGGGCATCGTGTGTTTTGTCCTAGCAGTTGGGCATGGCATTTGGCAGAACAAGAAATGCTACCACTTCCAGATTTTTCTGCCATGGGTAAAATATGTCTCTTCATCAGCTGTCTCTGCCATCCTCATATTCTGGTCCTACTTCATTATTCTCAATACCATGGTGCCCATTTCCCTCTATGTCAGTGTTGAAATAATAAGATTGGGCAACAGTTTATATATCAACTGGGATCGGAAGATGTTTTATGCACCAAGGAACACACCAGCACAGGTGATACTTATGACAAGGATGGACAGAGGGTGACGGTCTCTGAGACAGTTTATGAGACCTGGTTTATCACATGCTACAGTCTGGTCTACACTTCCCTCCCTGTCCTGTGCATGAGTCTGTTTGATCAGTAACCCATAAGGAAGCTCCTAGGCAGCCTGGCAGCAGACCTGGTGAGGGGAGAAGCCTCTACTCTGATGGAGATGGGACCTTCTATGGAGAGACCCTGAGCCTCCCTCCTTACCCTCGGGTGCTTCCAGGATGTGAATGAGACATGGAGCCTCCATTTCCCAGAGCTGTATGAGCCAGGCCAGCACAACCTCTATTTCAACAAGAAAGAATTTGTGAAGTGTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG052109]] | + | [[Category:Intergenic]][[Category:NONHSAG052109]][[Category:Transcripts]] |
Latest revision as of 07:16, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT130939 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
925 nt |
| Genomic location |
chr9+:35447171..35480136 |
| Exon number |
7 |
| Exons |
35447171..35447388,35449466..35449554,35469141..35469321,35471017..35471101,35473725..35473768,35478239..35478322,35479913..35480136 |
| Genome context |
|
| Sequence |
000001 TCCTTAGGAA AAGCCTAAGA TTAGAGATCC AGAACTCTTA CACCTTCATT TTTCTGCAGG AGAAGTGAGA TGTGAGGCTC 000080
000081 CCAATAACAA ATTGGACAAA TTCTCAGGAA TACTGACCTA TAAGGGGAAA AACTACTTCC TGGACCATGA CAAGCTGCTA 000160 000161 CTCTGAGGCT GCAACATCAG GAATACAGAT TGGTGCTATG GCTTGGTGAT CTACACTGGG CCAGATACCA AATTAATGCA 000240 000241 GAATAGTGGA AAGTCCACTT TTAAACGAAC ACAGATAGAC CATCTCATGA ATGTCCTTGT ACTCTGGGCA TCGTGTGTTT 000320 000321 TGTCCTAGCA GTTGGGCATG GCATTTGGCA GAACAAGAAA TGCTACCACT TCCAGATTTT TCTGCCATGG GTAAAATATG 000400 000401 TCTCTTCATC AGCTGTCTCT GCCATCCTCA TATTCTGGTC CTACTTCATT ATTCTCAATA CCATGGTGCC CATTTCCCTC 000480 000481 TATGTCAGTG TTGAAATAAT AAGATTGGGC AACAGTTTAT ATATCAACTG GGATCGGAAG ATGTTTTATG CACCAAGGAA 000560 000561 CACACCAGCA CAGGTGATAC TTATGACAAG GATGGACAGA GGGTGACGGT CTCTGAGACA GTTTATGAGA CCTGGTTTAT 000640 000641 CACATGCTAC AGTCTGGTCT ACACTTCCCT CCCTGTCCTG TGCATGAGTC TGTTTGATCA GTAACCCATA AGGAAGCTCC 000720 000721 TAGGCAGCCT GGCAGCAGAC CTGGTGAGGG GAGAAGCCTC TACTCTGATG GAGATGGGAC CTTCTATGGA GAGACCCTGA 000800 000801 GCCTCCCTCC TTACCCTCGG GTGCTTCCAG GATGTGAATG AGACATGGAG CCTCCATTTC CCAGAGCTGT ATGAGCCAGG 000880 000881 CCAGCACAAC CTCTATTTCA ACAAGAAAGA ATTTGTGAAG TGTTT |
Predicted Small Protein
| Name | NONHSAT130939_smProtein_290:493 |
| Length | 68 |
| Molecular weight | 7703.0248 |
| Aromaticity | 0.134328358209 |
| Instability index | 62.6641791045 |
| Isoelectric point | 6.62030029297 |
| Runs | 12 |
| Runs residual | 0.0357896381965 |
| Runs probability | 0.0773346876288 |
| Amino acid sequence | MSLYSGHRVFCPSSWAWHLAEQEMLPLPDFSAMGKICLFISCLCHPHILVLLHYSQYHGA HFPLCQC |
| Secondary structure | LLLLLLLEEELLLHHHHHHHHHHLLLLLLLHHHLHHHHHHHHLLLLLLEEEEEHHHHHLL LLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo ooooooo |
