Difference between revisions of "NONHSAT112316"
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sequence = <dnaseq>ATGAACAGACAGTTGGACCTAAGTGGGAAGGTAATCATGAAAGCTCAACTTGGGGAGGATATTCCAAAAATTCCTATTCATAATGAAGATATTAATATTACTTATGATGAATTAGTGCTAATGATGCAACGAGTTTTCAGGGGAAAACTTCTGCGTAATGTTGAAGTAACAATAAAGTATAAAGATGCAGATGACGATCTTATAACAATTTTTGATAGTTCTGATCTTTCCTTTGCAATTCAGTGTAGTAGGACACTGAAATTGACATTATTTGTTAATGGCCAACGAAGACCCCTTGAATCAAGTCAGGTGAAATATCTCTGTCGAGAACTGACAGAACTTTGAAATAAAGTGAATCACTTATTGGATAGCTTGGAACCACCTGGAAAACCAGGACCTTCCACTAATATTCCTGAAAATGTTACTGTGAATGGTAGGGAAGAAAAGCCTGCTTCTTCGGATTCTTCTGGAAAACAGTCTACTCAGGTTATGGCAGCAAGTATGTCAGCTTTTGACCCTTTTAAAAAACCAAGATGAAATAAAAAATAATGTTACGTCGGCATTTGGCTTAACAGATGATCAGGTTTCAGGGCAACCCAGTGCTCCTGCAGAAGACTGTTCAGGAACATCTGACAGCATTGCCGCCTCCTCCTCAGTAGCAGCTCACCCACCAGGAGTTCAGCCACAGCAACCACCATATACAGAAGCTAAGATACAAGCAGGTCAGACTGAAAGTCAGCTGTATCAATAGTACCAGCAACAGGCTAGCTATGGTGCACCGTGTCTGCGGGCTCTACCTCAGCAGCCTCAACAGTATGGTATTCAGTATTCAAAAAGCCAGAGTCAGCAGACTGGACTCCAAACAACCTCAGCAGTTCCAAGGATATGGCCAGCAACCAACTACCCAGGCACCAGCTCCTGCCTTTTTGGTCAGCCTCAACAACTGCCTGCTCAGCTGCCACACAGTACCAGGCAAGCAATTATCCTGCACAAATTTATACTACCCAAACTTTTCAGCCTACTAATTATACTGTGGCCCCTGCCTCTCAACCTAGAATGGCTCCAAGCCAACCTGGGGCCTATAGACCAAGATCAAGTTTTACTTCACTTCCTGTAAGTAGCATGACCCCTCCTCCAACTGGGCCTAATCCTTATATGTCCTCCCTTTGGTCAGGGCTATACCAAACCTGGACCTGGTTATCGATAA</dnaseq>| | sequence = <dnaseq>ATGAACAGACAGTTGGACCTAAGTGGGAAGGTAATCATGAAAGCTCAACTTGGGGAGGATATTCCAAAAATTCCTATTCATAATGAAGATATTAATATTACTTATGATGAATTAGTGCTAATGATGCAACGAGTTTTCAGGGGAAAACTTCTGCGTAATGTTGAAGTAACAATAAAGTATAAAGATGCAGATGACGATCTTATAACAATTTTTGATAGTTCTGATCTTTCCTTTGCAATTCAGTGTAGTAGGACACTGAAATTGACATTATTTGTTAATGGCCAACGAAGACCCCTTGAATCAAGTCAGGTGAAATATCTCTGTCGAGAACTGACAGAACTTTGAAATAAAGTGAATCACTTATTGGATAGCTTGGAACCACCTGGAAAACCAGGACCTTCCACTAATATTCCTGAAAATGTTACTGTGAATGGTAGGGAAGAAAAGCCTGCTTCTTCGGATTCTTCTGGAAAACAGTCTACTCAGGTTATGGCAGCAAGTATGTCAGCTTTTGACCCTTTTAAAAAACCAAGATGAAATAAAAAATAATGTTACGTCGGCATTTGGCTTAACAGATGATCAGGTTTCAGGGCAACCCAGTGCTCCTGCAGAAGACTGTTCAGGAACATCTGACAGCATTGCCGCCTCCTCCTCAGTAGCAGCTCACCCACCAGGAGTTCAGCCACAGCAACCACCATATACAGAAGCTAAGATACAAGCAGGTCAGACTGAAAGTCAGCTGTATCAATAGTACCAGCAACAGGCTAGCTATGGTGCACCGTGTCTGCGGGCTCTACCTCAGCAGCCTCAACAGTATGGTATTCAGTATTCAAAAAGCCAGAGTCAGCAGACTGGACTCCAAACAACCTCAGCAGTTCCAAGGATATGGCCAGCAACCAACTACCCAGGCACCAGCTCCTGCCTTTTTGGTCAGCCTCAACAACTGCCTGCTCAGCTGCCACACAGTACCAGGCAAGCAATTATCCTGCACAAATTTATACTACCCAAACTTTTCAGCCTACTAATTATACTGTGGCCCCTGCCTCTCAACCTAGAATGGCTCCAAGCCAACCTGGGGCCTATAGACCAAGATCAAGTTTTACTTCACTTCCTGTAAGTAGCATGACCCCTCCTCCAACTGGGCCTAATCCTTATATGTCCTCCCTTTGGTCAGGGCTATACCAAACCTGGACCTGGTTATCGATAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG043716]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG043716]][[Category:Transcripts]] |
Latest revision as of 01:51, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT112316 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
1207 nt |
| Genomic location |
chr6+:38555099..38556305 |
| Exon number |
1 |
| Exons |
38555099..38556305 |
| Genome context |
|
| Sequence |
000001 ATGAACAGAC AGTTGGACCT AAGTGGGAAG GTAATCATGA AAGCTCAACT TGGGGAGGAT ATTCCAAAAA TTCCTATTCA 000080
000081 TAATGAAGAT ATTAATATTA CTTATGATGA ATTAGTGCTA ATGATGCAAC GAGTTTTCAG GGGAAAACTT CTGCGTAATG 000160 000161 TTGAAGTAAC AATAAAGTAT AAAGATGCAG ATGACGATCT TATAACAATT TTTGATAGTT CTGATCTTTC CTTTGCAATT 000240 000241 CAGTGTAGTA GGACACTGAA ATTGACATTA TTTGTTAATG GCCAACGAAG ACCCCTTGAA TCAAGTCAGG TGAAATATCT 000320 000321 CTGTCGAGAA CTGACAGAAC TTTGAAATAA AGTGAATCAC TTATTGGATA GCTTGGAACC ACCTGGAAAA CCAGGACCTT 000400 000401 CCACTAATAT TCCTGAAAAT GTTACTGTGA ATGGTAGGGA AGAAAAGCCT GCTTCTTCGG ATTCTTCTGG AAAACAGTCT 000480 000481 ACTCAGGTTA TGGCAGCAAG TATGTCAGCT TTTGACCCTT TTAAAAAACC AAGATGAAAT AAAAAATAAT GTTACGTCGG 000560 000561 CATTTGGCTT AACAGATGAT CAGGTTTCAG GGCAACCCAG TGCTCCTGCA GAAGACTGTT CAGGAACATC TGACAGCATT 000640 000641 GCCGCCTCCT CCTCAGTAGC AGCTCACCCA CCAGGAGTTC AGCCACAGCA ACCACCATAT ACAGAAGCTA AGATACAAGC 000720 000721 AGGTCAGACT GAAAGTCAGC TGTATCAATA GTACCAGCAA CAGGCTAGCT ATGGTGCACC GTGTCTGCGG GCTCTACCTC 000800 000801 AGCAGCCTCA ACAGTATGGT ATTCAGTATT CAAAAAGCCA GAGTCAGCAG ACTGGACTCC AAACAACCTC AGCAGTTCCA 000880 000881 AGGATATGGC CAGCAACCAA CTACCCAGGC ACCAGCTCCT GCCTTTTTGG TCAGCCTCAA CAACTGCCTG CTCAGCTGCC 000960 000961 ACACAGTACC AGGCAAGCAA TTATCCTGCA CAAATTTATA CTACCCAAAC TTTTCAGCCT ACTAATTATA CTGTGGCCCC 001040 001041 TGCCTCTCAA CCTAGAATGG CTCCAAGCCA ACCTGGGGCC TATAGACCAA GATCAAGTTT TACTTCACTT CCTGTAAGTA 001120 001121 GCATGACCCC TCCTCCAACT GGGCCTAATC CTTATATGTC CTCCCTTTGG TCAGGGCTAT ACCAAACCTG GACCTGGTTA 001200 001201 TCGATAA |
Predicted Small Protein
| Name | NONHSAT112316_smProtein_770:1024 |
| Length | 85 |
| Molecular weight | 9344.65 |
| Aromaticity | 0.107142857143 |
| Instability index | 56.425 |
| Isoelectric point | 9.30096435547 |
| Runs | 12 |
| Runs residual | 0.00887170154686 |
| Runs probability | 0.0411072837543 |
| Amino acid sequence | MVHRVCGLYLSSLNSMVFSIQKARVSRLDSKQPQQFQGYGQQPTTQAPAPAFLVSLNNCL LSCHTVPGKQLSCTNLYYPNFSAY |
| Secondary structure | LEEEEEEEEHHHHHHHHHHHHHHHHHLLLLLLLHHHLLLLLLLLLLLLLLLLEEELLLLE EEEEELLLLEEEELLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
