Difference between revisions of "NONHSAT112717"
Line 42: | Line 42: | ||
sequence = <dnaseq>TCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGTAAATCTTGCGCAGGTCTCTGCTGTACTCCTGAGGGATTCAGACCTCAGATGGGGCTCTAGGTTTGGAATACAGGCAGTCATGAACCTGTCCCTCAGGCATGGCCTCTGCCCCTGACCTCTGGCTCCTTAAAGTCTGGGAACCATGTTGTGATTCAGGGGTGTCTGCCTTTGGGGTCTTTTTTCCTTCCCTGTATCACATACCTTCTATACCCTGGTTCCTACACTGATATTATATACTAGCGTGGTTACCTTCTCTGTCCACAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTT</dnaseq>| | sequence = <dnaseq>TCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGTAAATCTTGCGCAGGTCTCTGCTGTACTCCTGAGGGATTCAGACCTCAGATGGGGCTCTAGGTTTGGAATACAGGCAGTCATGAACCTGTCCCTCAGGCATGGCCTCTGCCCCTGACCTCTGGCTCCTTAAAGTCTGGGAACCATGTTGTGATTCAGGGGTGTCTGCCTTTGGGGTCTTTTTTCCTTCCCTGTATCACATACCTTCTATACCCTGGTTCCTACACTGATATTATATACTAGCGTGGTTACCTTCTCTGTCCACAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG043757]] | + | [[Category:Intergenic]][[Category:NONHSAG043757]][[Category:Transcripts]] |
Latest revision as of 01:52, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT112717 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
763 nt |
Genomic location |
chr6+:41105834..41107725 |
Exon number |
2 |
Exons |
41105834..41106464,41107594..41107725 |
Genome context |
|
Sequence |
000001 TCTCTTTATA AATAGAGCTA TGAAGAGATT TAAAGGATGT TAGGCTGCTT TGAAGGTGTA AGACCCCTTC CTTTCCTACC 000080
000081 CATCCTCCTC ACTCCCTAGC TGGTCCCAGT GGCTCTCTCT CTCGGCAGAT TTGGTCTGTG TGTCCATGTA CTGGAGAGTC 000160 000161 AGTGGGCGCT CATTTCTCAG AGTTATGATG TCCTTGGCCT GGCCTGCTTT TACTCTGCTT GCTTAGATCT GCTGCTCTAT 000240 000241 GGAAAAGGTA AATCTTGCGC AGGTCTCTGC TGTACTCCTG AGGGATTCAG ACCTCAGATG GGGCTCTAGG TTTGGAATAC 000320 000321 AGGCAGTCAT GAACCTGTCC CTCAGGCATG GCCTCTGCCC CTGACCTCTG GCTCCTTAAA GTCTGGGAAC CATGTTGTGA 000400 000401 TTCAGGGGTG TCTGCCTTTG GGGTCTTTTT TCCTTCCCTG TATCACATAC CTTCTATACC CTGGTTCCTA CACTGATATT 000480 000481 ATATACTAGC GTGGTTACCT TCTCTGTCCA CAGGATTGCT GTGTCGGCCC TTTAGTGAGT GTCTGCGTTT CGTTCAAGTC 000560 000561 TACGAGCACA GCCGTGTTCT AACCTCTCAG AGCAATGTCA TGCTGGGGGT CCACTCCTCC CTGGCCATGT GTACTGTAAG 000640 000641 GAGTTCTTCT CTCAATGTGT GACCTGCCCT GTCTATCACC AGTGGGTATC TGAGCTTAAG GCCTCTGTAA TGAGATGTGA 000720 000721 AAAGAGAGAA TTGATGTCCC TGACTAACAG CATCAGACCT TTT |
Predicted Small Protein
Name | NONHSAT112717_smProtein_347:475 |
Length | 43 |
Molecular weight | 4765.5299 |
Aromaticity | 0.190476190476 |
Instability index | 57.0857142857 |
Isoelectric point | 5.20367431641 |
Runs | 5 |
Runs residual | 0.0571127185051 |
Runs probability | 0.1 |
Amino acid sequence | MASAPDLWLLKVWEPCCDSGVSAFGVFFPSLYHIPSIPWFLH |
Secondary structure | LLLLLHHHHHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo |