Difference between revisions of "NONHSAT037822"
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sequence = <dnaseq>GTCCGCCCGCCCTCGGCTCCTCCGCCGTGATGCTGTCCCGATCCCGCTGTGTGTCTCGGGCGTTCAGCCGCTCGCTCTCCGCCTTCCAGAAGGGGAACTGCCCTCTAGGGAGACGTTCCCTGCCTGGGGTCTCCTTATGCCAGGGACCAGGTTACCCTAACAGCAGGAAGGTTGTGTAAGTATCACTGGGGAGTACAGATATGTGGCCACGGGTTATTTATTTAAAGACATAAAGTTCTAAATTTGACCATCTGATTTCTTCACTGGCCTCCAGACCTAGAAATTGAGGTGATTATGTTGAGTCCCTAGACTAACCTCAATGTTCACTTTTCCCATGTGATGTTCCTTGAGCATCAGCTCCGTGTCAGGTTTTGGACTGGGAGTGTGCCCACTCTCCACAGGTGTTTGGATTATAATGAAAGTTAAGTTGGAATCCTCTTTTTATGGGATATAGAAGGGTGCTCCTAGATATTCTGTTTGGATGTAAGTGCAGCTGAAAGGCTCGAGGTTACATTTATTGTGGAGATTGAGAGCATCCTCTCAGTAGCATAGTTACTCATTTTTA</dnaseq>| | sequence = <dnaseq>GTCCGCCCGCCCTCGGCTCCTCCGCCGTGATGCTGTCCCGATCCCGCTGTGTGTCTCGGGCGTTCAGCCGCTCGCTCTCCGCCTTCCAGAAGGGGAACTGCCCTCTAGGGAGACGTTCCCTGCCTGGGGTCTCCTTATGCCAGGGACCAGGTTACCCTAACAGCAGGAAGGTTGTGTAAGTATCACTGGGGAGTACAGATATGTGGCCACGGGTTATTTATTTAAAGACATAAAGTTCTAAATTTGACCATCTGATTTCTTCACTGGCCTCCAGACCTAGAAATTGAGGTGATTATGTTGAGTCCCTAGACTAACCTCAATGTTCACTTTTCCCATGTGATGTTCCTTGAGCATCAGCTCCGTGTCAGGTTTTGGACTGGGAGTGTGCCCACTCTCCACAGGTGTTTGGATTATAATGAAAGTTAAGTTGGAATCCTCTTTTTATGGGATATAGAAGGGTGCTCCTAGATATTCTGTTTGGATGTAAGTGCAGCTGAAAGGCTCGAGGTTACATTTATTGTGGAGATTGAGAGCATCCTCTCAGTAGCATAGTTACTCATTTTTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG015476]] | + | [[Category:Sense]][[Category:NONHSAG015476]][[Category:Transcripts]] |
Latest revision as of 21:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT037822 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
565 nt |
Genomic location |
chr14+:75348628..75352727 |
Exon number |
3 |
Exons |
75348628..75348719,75349294..75349327,75352289..75352727 |
Genome context |
|
Sequence |
000001 GTCCGCCCGC CCTCGGCTCC TCCGCCGTGA TGCTGTCCCG ATCCCGCTGT GTGTCTCGGG CGTTCAGCCG CTCGCTCTCC 000080
000081 GCCTTCCAGA AGGGGAACTG CCCTCTAGGG AGACGTTCCC TGCCTGGGGT CTCCTTATGC CAGGGACCAG GTTACCCTAA 000160 000161 CAGCAGGAAG GTTGTGTAAG TATCACTGGG GAGTACAGAT ATGTGGCCAC GGGTTATTTA TTTAAAGACA TAAAGTTCTA 000240 000241 AATTTGACCA TCTGATTTCT TCACTGGCCT CCAGACCTAG AAATTGAGGT GATTATGTTG AGTCCCTAGA CTAACCTCAA 000320 000321 TGTTCACTTT TCCCATGTGA TGTTCCTTGA GCATCAGCTC CGTGTCAGGT TTTGGACTGG GAGTGTGCCC ACTCTCCACA 000400 000401 GGTGTTTGGA TTATAATGAA AGTTAAGTTG GAATCCTCTT TTTATGGGAT ATAGAAGGGT GCTCCTAGAT ATTCTGTTTG 000480 000481 GATGTAAGTG CAGCTGAAAG GCTCGAGGTT ACATTTATTG TGGAGATTGA GAGCATCCTC TCAGTAGCAT AGTTACTCAT 000560 000561 TTTTA |
Predicted Small Protein
Name | NONHSAT037822_smProtein_29:178 |
Length | 50 |
Molecular weight | 5312.1497 |
Aromaticity | 0.0612244897959 |
Instability index | 67.8244897959 |
Isoelectric point | 11.6250610352 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0321105419145 |
Amino acid sequence | MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVV |
Secondary structure | LLLLLLEELHHHHLLHHHHHLLLLLLLLLLLLLLEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |