Difference between revisions of "NONHSAT091276"
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sequence = <dnaseq>CGAGCACGGAATTGCTGAAGTTGTGAAGGTTGATGCTGTGAATGCGCTCGGTCATCCCCTTGCAACTGATGTCACCTGCAGCATGTCAACGCAGACACAAAACAGGGCATGGGTCAGATCTAGCTGGTTGCATTCCTAACACCTAGGTTTCAGAGTAAAAATACAGAGTCAGCTTGTGATGGCATTCCCTCAAAACATGGAAGGAATTGCAGTAATGAAAGTCATCATGTATTCTAAGAGACTGTTCTGCGAGAGCACAACACAGACGGGGCTAAAGCAGGGTGAGAAGCAAAAGTGCTCAGGAGTTAAGAGAAGCAGACGTCCGAAATTATCTCCATGCATTACCAAAAACCGTGGGCACCACGGCACGGGGAAAACTTACCAGACAACTCTCATGCCATCAAGCCGACGGACTTTCAAAAAAATAAAAGATGCATTTCTTTACTTGCAACATCAGCTCCTGATTTCTAGGTCTGGATCTGGGTTCTCTGTAGCACAGGAAGGTCTCTACTTCTCCTACATAAATGCCTTGCATGGCGGGAACTAAATCAACTACACAGACCCATACATCCAGAGAGCAGAGGTGAGCTGGATACAAGTGGCTTAGAGATGTGGTGGAAGGAGGCCAGAGCTCCAAGGGAAGGGCAGCAAGGAGACAACAGCATGGGTTGCAGCTCAGACAACAGGTAAATAAAACCAAGCAAAGCTGCTGGTCACAGATTTGACCAGGGTGGCAAGAAATGACAAGCTACCATGAGATTCAACAGTGGCACGGAAGGATGATGAGAAGCAAACAGATTAGGAGAAGCTGCCACCACCGTACATAGAGGCACAGATGACCAAGCAGAACAGCACCAGTCCCTGCAAGGTGTGCTCAGATACAGCTCAGCACAGCCATCTGGCCAGGAGGGAATGATAATGCACATGGTGTGCACTGCAGCCGGGAAGTTGAGAACCGCTGTGGGCACCTCAGGACTGAGTCTGGTTACCCTGCTGATCCAAGAAATGAAGCCATCTAAAATTTTGCCTGCTTTCACAATTTTCTGTGTGTGTGTGTGTGTATTAAACAAAGTGAACTAAGAAGCCTTTTATTGGAGACATAATGTACTCACAGTAGTTTCAAAATCAATGGTGTCACTCTTCAGGTAAATTACTCCAAGGCTTGGGCCTAGTGCAGATGTTCATTGGGGCAGGGAGCAGAGAGCGGCTGCATCTAGATCAGACAAAAAACAAAAATAAGGTTGTTAAATGAACAGGTGATGGTGATGGCAAT</dnaseq>| | sequence = <dnaseq>CGAGCACGGAATTGCTGAAGTTGTGAAGGTTGATGCTGTGAATGCGCTCGGTCATCCCCTTGCAACTGATGTCACCTGCAGCATGTCAACGCAGACACAAAACAGGGCATGGGTCAGATCTAGCTGGTTGCATTCCTAACACCTAGGTTTCAGAGTAAAAATACAGAGTCAGCTTGTGATGGCATTCCCTCAAAACATGGAAGGAATTGCAGTAATGAAAGTCATCATGTATTCTAAGAGACTGTTCTGCGAGAGCACAACACAGACGGGGCTAAAGCAGGGTGAGAAGCAAAAGTGCTCAGGAGTTAAGAGAAGCAGACGTCCGAAATTATCTCCATGCATTACCAAAAACCGTGGGCACCACGGCACGGGGAAAACTTACCAGACAACTCTCATGCCATCAAGCCGACGGACTTTCAAAAAAATAAAAGATGCATTTCTTTACTTGCAACATCAGCTCCTGATTTCTAGGTCTGGATCTGGGTTCTCTGTAGCACAGGAAGGTCTCTACTTCTCCTACATAAATGCCTTGCATGGCGGGAACTAAATCAACTACACAGACCCATACATCCAGAGAGCAGAGGTGAGCTGGATACAAGTGGCTTAGAGATGTGGTGGAAGGAGGCCAGAGCTCCAAGGGAAGGGCAGCAAGGAGACAACAGCATGGGTTGCAGCTCAGACAACAGGTAAATAAAACCAAGCAAAGCTGCTGGTCACAGATTTGACCAGGGTGGCAAGAAATGACAAGCTACCATGAGATTCAACAGTGGCACGGAAGGATGATGAGAAGCAAACAGATTAGGAGAAGCTGCCACCACCGTACATAGAGGCACAGATGACCAAGCAGAACAGCACCAGTCCCTGCAAGGTGTGCTCAGATACAGCTCAGCACAGCCATCTGGCCAGGAGGGAATGATAATGCACATGGTGTGCACTGCAGCCGGGAAGTTGAGAACCGCTGTGGGCACCTCAGGACTGAGTCTGGTTACCCTGCTGATCCAAGAAATGAAGCCATCTAAAATTTTGCCTGCTTTCACAATTTTCTGTGTGTGTGTGTGTGTATTAAACAAAGTGAACTAAGAAGCCTTTTATTGGAGACATAATGTACTCACAGTAGTTTCAAAATCAATGGTGTCACTCTTCAGGTAAATTACTCCAAGGCTTGGGCCTAGTGCAGATGTTCATTGGGGCAGGGAGCAGAGAGCGGCTGCATCTAGATCAGACAAAAAACAAAAATAAGGTTGTTAAATGAACAGGTGATGGTGATGGCAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG035788]] | + | [[Category:Intergenic]][[Category:NONHSAG035788]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:38, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT091276 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1273 nt |
| Genomic location |
chr3+:114070651..114108012 |
| Exon number |
6 |
| Exons |
114070651..114070803,114074900..114075028,114085543..114085645,114085814..114085875,114106371..114106426,114107243..114108012 |
| Genome context |
|
| Sequence |
000001 CGAGCACGGA ATTGCTGAAG TTGTGAAGGT TGATGCTGTG AATGCGCTCG GTCATCCCCT TGCAACTGAT GTCACCTGCA 000080
000081 GCATGTCAAC GCAGACACAA AACAGGGCAT GGGTCAGATC TAGCTGGTTG CATTCCTAAC ACCTAGGTTT CAGAGTAAAA 000160 000161 ATACAGAGTC AGCTTGTGAT GGCATTCCCT CAAAACATGG AAGGAATTGC AGTAATGAAA GTCATCATGT ATTCTAAGAG 000240 000241 ACTGTTCTGC GAGAGCACAA CACAGACGGG GCTAAAGCAG GGTGAGAAGC AAAAGTGCTC AGGAGTTAAG AGAAGCAGAC 000320 000321 GTCCGAAATT ATCTCCATGC ATTACCAAAA ACCGTGGGCA CCACGGCACG GGGAAAACTT ACCAGACAAC TCTCATGCCA 000400 000401 TCAAGCCGAC GGACTTTCAA AAAAATAAAA GATGCATTTC TTTACTTGCA ACATCAGCTC CTGATTTCTA GGTCTGGATC 000480 000481 TGGGTTCTCT GTAGCACAGG AAGGTCTCTA CTTCTCCTAC ATAAATGCCT TGCATGGCGG GAACTAAATC AACTACACAG 000560 000561 ACCCATACAT CCAGAGAGCA GAGGTGAGCT GGATACAAGT GGCTTAGAGA TGTGGTGGAA GGAGGCCAGA GCTCCAAGGG 000640 000641 AAGGGCAGCA AGGAGACAAC AGCATGGGTT GCAGCTCAGA CAACAGGTAA ATAAAACCAA GCAAAGCTGC TGGTCACAGA 000720 000721 TTTGACCAGG GTGGCAAGAA ATGACAAGCT ACCATGAGAT TCAACAGTGG CACGGAAGGA TGATGAGAAG CAAACAGATT 000800 000801 AGGAGAAGCT GCCACCACCG TACATAGAGG CACAGATGAC CAAGCAGAAC AGCACCAGTC CCTGCAAGGT GTGCTCAGAT 000880 000881 ACAGCTCAGC ACAGCCATCT GGCCAGGAGG GAATGATAAT GCACATGGTG TGCACTGCAG CCGGGAAGTT GAGAACCGCT 000960 000961 GTGGGCACCT CAGGACTGAG TCTGGTTACC CTGCTGATCC AAGAAATGAA GCCATCTAAA ATTTTGCCTG CTTTCACAAT 001040 001041 TTTCTGTGTG TGTGTGTGTG TATTAAACAA AGTGAACTAA GAAGCCTTTT ATTGGAGACA TAATGTACTC ACAGTAGTTT 001120 001121 CAAAATCAAT GGTGTCACTC TTCAGGTAAA TTACTCCAAG GCTTGGGCCT AGTGCAGATG TTCATTGGGG CAGGGAGCAG 001200 001201 AGAGCGGCTG CATCTAGATC AGACAAAAAA CAAAAATAAG GTTGTTAAAT GAACAGGTGA TGGTGATGGC AAT |
Predicted Small Protein
| Name | NONHSAT091276_smProtein_41:145 |
| Length | 35 |
| Molecular weight | 3647.2414 |
| Aromaticity | 0.0 |
| Instability index | 91.9558823529 |
| Isoelectric point | 9.68841552734 |
| Runs | 5 |
| Runs residual | 0.0390915860015 |
| Runs probability | 0.0307189542484 |
| Amino acid sequence | MRSVIPLQLMSPAACQRRHKTGHGSDLAGCIPNT |
| Secondary structure | LLEEELLLLLLHHHHHHHHLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
