Difference between revisions of "NONHSAT133461"

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sequence = <dnaseq>TTTCAGGAGAAATGATACCAGCTTTTTTTGTACCTCTGGTAGAATTCAACTGTGACTCCATCTGGTCCTGGGCTTTTTTTGATTGGGAAGCCATGTGACTTCATCCTCCGTGGCTCTGGTGGTCTCTTCGACATCTGTGAGATACTCACTAAAAGCTGGTTGCGCTTTGAGATCTGGGCGCCTGCTGGAACCTGGAGCCACAAGTCTTCATTCATGCTAAAGAACTCCTGTCTTGGTGGAGTGGCTCGGCTGGCCCGTGTATGGGAACCCATGAGGCTGTCCGCGCATCCCGAAGTGTGACCTTCCAGGCCCACAGGGTGGCTGGCGCTGGGCTTCTTCGTGGCCCGCGACAGTCCGGCCACCTTCATCGGCCAGTGGCGCACGGATCTGGGCGACTCCGAAGTGCTCCGCGAGCTGGCAAGGGAGACACTGGGACTCTGCACCCGCTCAGCTCCCCAAGATAAAGGCCTCGGAGGGGAAGTTCCGCGTGGGAGACTCCGGCCTGTTGGTCTCTGTGCTGGTGCGGGGGAGCCGCGTGACGGCGCGCGTGGGTGTGGCGACCCGCTGGAGCGCTACCTGGACCGTCAGGACCCGCGCTGCCGCTCCTCCACTACCCACTGCCCGCCCCCGTCGAGGGTCCGCACCCTGTCCCCGCAGAGGGTGTCGCCCACCCCTAGCCCCTGCCCTGGTAGCCTGGTCCCCTCGAGAGAGCGCCGGCGCTCCGGGCCCTAGGTGACCCCTATTCGCTTACAAAGCATAAAGCAGGTGCCGAGGCTCCCAGGCCCTGGGATCAGCTGCCCGCCGCATCCCCGCTCCTACTCCGAGGACAGTGACTCCTCAGCTTTCTCAGCCCAGAGCCGCCCCCTTGGTGCCCGCAGCGAGGATGAGGCACTAGGCCCGGAGGAAGCGATCCAGACGGGGGCTGACCACCACCACCTGGCCTCTCCGAGACGGCCCCCTGCCCCGCGCAGCCAGTCCCGGGACCGGCTGGATCCGGGTCAGCCCCGGGGAGCTCCAGAAGAGAGAGGAGGGGAGCCCAGCTGCGGGCCCTCAGCCCTGCCCCGTGGGCGCAGGAGCAGGTTGGGCGCAAGGATGGAGATGGGCAGCACTCGTGGGAGCCACAGGGCAGGGGCAGCGGGGCTCGGGCAGGAGCACTCCTGGGCTCTCCGTGCCCACCGCCCTGAAGCACCCTGGCTTTCCCAGTCCAAACCCAGTGTAGAGTTTAGCACCACACGCGCCAGCGTCTTCCGCACACACCAGAGCAGCTGCTCTGACGCCTGGACGAGGAGTTTCTGGCCAATGCCGGGACCCATAAGGCTGTTGCTAGCGGGACCTCCACTAGACCAGCCCCTAACCGGGCTCCAGCCCCAGACCCTCTAGCTCCTGACTCGGCCTACAGATCCTCTAGTTCCTCCTCTTCATCCCTCATTCTCTTGTATGGCAAACGTGGCCAACGTGGGGACTCTGGCCTTAAGACCAATGGGCTGCCCGGCCCGCTGTCAAGCCCTTCCCAGCTCCTCCTCCAATGAAGGAAAGCCCTGCCCTAGCATGGGAGGGGCTACTAGATGCACCTGGGAGCCCCCTGACTGGTCCAGAACACTCGAGGACCTGAGCACTGGGTAGGATGGACATACAGCCAGACTGCAAACCCTCGGGCATCCCCATGCCTAGGGTCTCCCCCGGGTTCCTCCAGACCCACAGAGTTGGGGGGTGCGGGGGGAAGGGGAAGGGAGCTTGCATGCCTCCAGCCAGGTTCCTGGACCAGACCAGCTGCCCCCAAACCCTGTCCCTTCTCCTTTTCGTTTGTGGCCTTAACCCTCTTTGCATCAGGGGGCCCCCTCTGCCTCTTGCGTTCCTGACTTCATGGGACCAGACTCCTCAGGAATGTCACAATGGGACCTCTATTGTACATTACAGTTGGGGGATGAGCTTTGCTATTTAATTACTAATATTATTGAATGCCTTAGAGGAGGCCAGAGCAGCCTGGTATCCTGAGGACACGTGGCCCAGCAGAGCCTCTGAACAGTAAAGTTTTGCTCCAGCCAAAATGAGAGAGAGAGAGAATCTATTAAGTTAGTTTAACCAGAACCCCCGTTATCCCTGATGCTTCCTGTTAGTAATTTTGTATCCAGTGACCCCTGTCCCTTGGCCATAAATTCCTACTTGTGCTTGTTCTATTTGGAATAGAGCCCAGTTCTGTACTGATGTCTCTTTTCCCCAACTGAGATAGTTTCTAAATAAAATTTGCCTTTGCTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>TTTCAGGAGAAATGATACCAGCTTTTTTTGTACCTCTGGTAGAATTCAACTGTGACTCCATCTGGTCCTGGGCTTTTTTTGATTGGGAAGCCATGTGACTTCATCCTCCGTGGCTCTGGTGGTCTCTTCGACATCTGTGAGATACTCACTAAAAGCTGGTTGCGCTTTGAGATCTGGGCGCCTGCTGGAACCTGGAGCCACAAGTCTTCATTCATGCTAAAGAACTCCTGTCTTGGTGGAGTGGCTCGGCTGGCCCGTGTATGGGAACCCATGAGGCTGTCCGCGCATCCCGAAGTGTGACCTTCCAGGCCCACAGGGTGGCTGGCGCTGGGCTTCTTCGTGGCCCGCGACAGTCCGGCCACCTTCATCGGCCAGTGGCGCACGGATCTGGGCGACTCCGAAGTGCTCCGCGAGCTGGCAAGGGAGACACTGGGACTCTGCACCCGCTCAGCTCCCCAAGATAAAGGCCTCGGAGGGGAAGTTCCGCGTGGGAGACTCCGGCCTGTTGGTCTCTGTGCTGGTGCGGGGGAGCCGCGTGACGGCGCGCGTGGGTGTGGCGACCCGCTGGAGCGCTACCTGGACCGTCAGGACCCGCGCTGCCGCTCCTCCACTACCCACTGCCCGCCCCCGTCGAGGGTCCGCACCCTGTCCCCGCAGAGGGTGTCGCCCACCCCTAGCCCCTGCCCTGGTAGCCTGGTCCCCTCGAGAGAGCGCCGGCGCTCCGGGCCCTAGGTGACCCCTATTCGCTTACAAAGCATAAAGCAGGTGCCGAGGCTCCCAGGCCCTGGGATCAGCTGCCCGCCGCATCCCCGCTCCTACTCCGAGGACAGTGACTCCTCAGCTTTCTCAGCCCAGAGCCGCCCCCTTGGTGCCCGCAGCGAGGATGAGGCACTAGGCCCGGAGGAAGCGATCCAGACGGGGGCTGACCACCACCACCTGGCCTCTCCGAGACGGCCCCCTGCCCCGCGCAGCCAGTCCCGGGACCGGCTGGATCCGGGTCAGCCCCGGGGAGCTCCAGAAGAGAGAGGAGGGGAGCCCAGCTGCGGGCCCTCAGCCCTGCCCCGTGGGCGCAGGAGCAGGTTGGGCGCAAGGATGGAGATGGGCAGCACTCGTGGGAGCCACAGGGCAGGGGCAGCGGGGCTCGGGCAGGAGCACTCCTGGGCTCTCCGTGCCCACCGCCCTGAAGCACCCTGGCTTTCCCAGTCCAAACCCAGTGTAGAGTTTAGCACCACACGCGCCAGCGTCTTCCGCACACACCAGAGCAGCTGCTCTGACGCCTGGACGAGGAGTTTCTGGCCAATGCCGGGACCCATAAGGCTGTTGCTAGCGGGACCTCCACTAGACCAGCCCCTAACCGGGCTCCAGCCCCAGACCCTCTAGCTCCTGACTCGGCCTACAGATCCTCTAGTTCCTCCTCTTCATCCCTCATTCTCTTGTATGGCAAACGTGGCCAACGTGGGGACTCTGGCCTTAAGACCAATGGGCTGCCCGGCCCGCTGTCAAGCCCTTCCCAGCTCCTCCTCCAATGAAGGAAAGCCCTGCCCTAGCATGGGAGGGGCTACTAGATGCACCTGGGAGCCCCCTGACTGGTCCAGAACACTCGAGGACCTGAGCACTGGGTAGGATGGACATACAGCCAGACTGCAAACCCTCGGGCATCCCCATGCCTAGGGTCTCCCCCGGGTTCCTCCAGACCCACAGAGTTGGGGGGTGCGGGGGGAAGGGGAAGGGAGCTTGCATGCCTCCAGCCAGGTTCCTGGACCAGACCAGCTGCCCCCAAACCCTGTCCCTTCTCCTTTTCGTTTGTGGCCTTAACCCTCTTTGCATCAGGGGGCCCCCTCTGCCTCTTGCGTTCCTGACTTCATGGGACCAGACTCCTCAGGAATGTCACAATGGGACCTCTATTGTACATTACAGTTGGGGGATGAGCTTTGCTATTTAATTACTAATATTATTGAATGCCTTAGAGGAGGCCAGAGCAGCCTGGTATCCTGAGGACACGTGGCCCAGCAGAGCCTCTGAACAGTAAAGTTTTGCTCCAGCCAAAATGAGAGAGAGAGAGAATCTATTAAGTTAGTTTAACCAGAACCCCCGTTATCCCTGATGCTTCCTGTTAGTAATTTTGTATCCAGTGACCCCTGTCCCTTGGCCATAAATTCCTACTTGTGCTTGTTCTATTTGGAATAGAGCCCAGTTCTGTACTGATGTCTCTTTTCCCCAACTGAGATAGTTTCTAAATAAAATTTGCCTTTGCTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG052978]]
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[[Category:Intergenic]][[Category:NONHSAG052978]][[Category:Transcripts]]

Latest revision as of 02:31, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT133461

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2311 nt

Genomic location

chr9-:99837953..99844227

Exon number

3

Exons

99837953..99839973,99841569..99841724,99844143..99844227

Genome context

Sequence
000001 TTTCAGGAGA AATGATACCA GCTTTTTTTG TACCTCTGGT AGAATTCAAC TGTGACTCCA TCTGGTCCTG GGCTTTTTTT 000080
000081 GATTGGGAAG CCATGTGACT TCATCCTCCG TGGCTCTGGT GGTCTCTTCG ACATCTGTGA GATACTCACT AAAAGCTGGT 000160
000161 TGCGCTTTGA GATCTGGGCG CCTGCTGGAA CCTGGAGCCA CAAGTCTTCA TTCATGCTAA AGAACTCCTG TCTTGGTGGA 000240
000241 GTGGCTCGGC TGGCCCGTGT ATGGGAACCC ATGAGGCTGT CCGCGCATCC CGAAGTGTGA CCTTCCAGGC CCACAGGGTG 000320
000321 GCTGGCGCTG GGCTTCTTCG TGGCCCGCGA CAGTCCGGCC ACCTTCATCG GCCAGTGGCG CACGGATCTG GGCGACTCCG 000400
000401 AAGTGCTCCG CGAGCTGGCA AGGGAGACAC TGGGACTCTG CACCCGCTCA GCTCCCCAAG ATAAAGGCCT CGGAGGGGAA 000480
000481 GTTCCGCGTG GGAGACTCCG GCCTGTTGGT CTCTGTGCTG GTGCGGGGGA GCCGCGTGAC GGCGCGCGTG GGTGTGGCGA 000560
000561 CCCGCTGGAG CGCTACCTGG ACCGTCAGGA CCCGCGCTGC CGCTCCTCCA CTACCCACTG CCCGCCCCCG TCGAGGGTCC 000640
000641 GCACCCTGTC CCCGCAGAGG GTGTCGCCCA CCCCTAGCCC CTGCCCTGGT AGCCTGGTCC CCTCGAGAGA GCGCCGGCGC 000720
000721 TCCGGGCCCT AGGTGACCCC TATTCGCTTA CAAAGCATAA AGCAGGTGCC GAGGCTCCCA GGCCCTGGGA TCAGCTGCCC 000800
000801 GCCGCATCCC CGCTCCTACT CCGAGGACAG TGACTCCTCA GCTTTCTCAG CCCAGAGCCG CCCCCTTGGT GCCCGCAGCG 000880
000881 AGGATGAGGC ACTAGGCCCG GAGGAAGCGA TCCAGACGGG GGCTGACCAC CACCACCTGG CCTCTCCGAG ACGGCCCCCT 000960
000961 GCCCCGCGCA GCCAGTCCCG GGACCGGCTG GATCCGGGTC AGCCCCGGGG AGCTCCAGAA GAGAGAGGAG GGGAGCCCAG 001040
001041 CTGCGGGCCC TCAGCCCTGC CCCGTGGGCG CAGGAGCAGG TTGGGCGCAA GGATGGAGAT GGGCAGCACT CGTGGGAGCC 001120
001121 ACAGGGCAGG GGCAGCGGGG CTCGGGCAGG AGCACTCCTG GGCTCTCCGT GCCCACCGCC CTGAAGCACC CTGGCTTTCC 001200
001201 CAGTCCAAAC CCAGTGTAGA GTTTAGCACC ACACGCGCCA GCGTCTTCCG CACACACCAG AGCAGCTGCT CTGACGCCTG 001280
001281 GACGAGGAGT TTCTGGCCAA TGCCGGGACC CATAAGGCTG TTGCTAGCGG GACCTCCACT AGACCAGCCC CTAACCGGGC 001360
001361 TCCAGCCCCA GACCCTCTAG CTCCTGACTC GGCCTACAGA TCCTCTAGTT CCTCCTCTTC ATCCCTCATT CTCTTGTATG 001440
001441 GCAAACGTGG CCAACGTGGG GACTCTGGCC TTAAGACCAA TGGGCTGCCC GGCCCGCTGT CAAGCCCTTC CCAGCTCCTC 001520
001521 CTCCAATGAA GGAAAGCCCT GCCCTAGCAT GGGAGGGGCT ACTAGATGCA CCTGGGAGCC CCCTGACTGG TCCAGAACAC 001600
001601 TCGAGGACCT GAGCACTGGG TAGGATGGAC ATACAGCCAG ACTGCAAACC CTCGGGCATC CCCATGCCTA GGGTCTCCCC 001680
001681 CGGGTTCCTC CAGACCCACA GAGTTGGGGG GTGCGGGGGG AAGGGGAAGG GAGCTTGCAT GCCTCCAGCC AGGTTCCTGG 001760
001761 ACCAGACCAG CTGCCCCCAA ACCCTGTCCC TTCTCCTTTT CGTTTGTGGC CTTAACCCTC TTTGCATCAG GGGGCCCCCT 001840
001841 CTGCCTCTTG CGTTCCTGAC TTCATGGGAC CAGACTCCTC AGGAATGTCA CAATGGGACC TCTATTGTAC ATTACAGTTG 001920
001921 GGGGATGAGC TTTGCTATTT AATTACTAAT ATTATTGAAT GCCTTAGAGG AGGCCAGAGC AGCCTGGTAT CCTGAGGACA 002000
002001 CGTGGCCCAG CAGAGCCTCT GAACAGTAAA GTTTTGCTCC AGCCAAAATG AGAGAGAGAG AGAATCTATT AAGTTAGTTT 002080
002081 AACCAGAACC CCCGTTATCC CTGATGCTTC CTGTTAGTAA TTTTGTATCC AGTGACCCCT GTCCCTTGGC CATAAATTCC 002160
002161 TACTTGTGCT TGTTCTATTT GGAATAGAGC CCAGTTCTGT ACTGATGTCT CTTTTCCCCA ACTGAGATAG TTTCTAAATA 002240
002241 AAATTTGCCT TTGCTGCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A
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Predicted Small Protein

Name NONHSAT133461_smProtein_260:463
Length 68
Molecular weight 7023.8485
Aromaticity 0.0149253731343
Instability index 40.6537313433
Isoelectric point 12.3688354492
Runs 10
Runs residual 0.0059388919278
Runs probability 0.0484631690515
Amino acid sequence MGTHEAVRASRSVTFQAHRVAGAGLLRGPRQSGHLHRPVAHGSGRLRSAPRAGKGDTGTL
HPLSSPR
Secondary structure LLLEEEEELLLEEEEEEHHHHLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLEEE
LLLLLLL
PRMN -
PiMo -