Difference between revisions of "NONHSAT114520"
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sequence = <dnaseq>ATGTTGATGCTGGCTGAGCAGCAGCAGAAGCAGAAGTGGGCTGTGAATACTCAAAACACTGCCTGGAGTAATGCTGATTCTAAATTTGGCCAGAGGATACTAGAGAAGATGGAATGGTCTAAAGGAAGGGGTTTAGGGGTTCAGGAGCAAGGAGGCCCAGATGATATTAAAGTTCAAGTTAAAAATAACGACCTGGGACTTCAAGCTACAATCAATAATGAAGCCAACTGGATTGCCCATCAAGATGATTTTAACTGGCTTCTGGCGGAACTGAACACTTGTCAGAGGCAGGAAACAGCAGACTCCTTAGACAACAAGAAAAAGAAATATTTTAGTCTTGAAGAAATTCCAAAATCTTCAAAAACTGTGTTCATCATAGGAAATTTACAAAAGAAAAGGATCTATCATCTCGGAGCAAAACAGATCGTGACTGCATTTTTGGGAAAAAACAGAGTAAGAAGACTCCCGAGGGTAATTCCAGTCCCTCCACTCCAGACAGAACAAAACCACGATGACAACCCATGCCTTCACCATCCAGGAGCGTTTTGCCAAGCGAATGGCAGCACTGAAGAACAAGCCCCAGGTTGCAGCTCCAGGGCCTGACATTTCCAAGACCCAAGTGGAATGCAAAAGGGGGAAGAAAAGAAACAAAGAGGCAACAGGTAAAAATGGGGAGAGTTACCCCCCAACACAGCCTAAGGCCAAGCGGCCTAAAGAGGGAAAGCCTAAGAGAGACAAGGTCCAGAAGTCGGCATCCAAGGAGAAAAGAGCACGGACAGACGGACAGTGCAGAGGCCTCTGCTGGGAAGAGAGTTCTGAGGCCTCTGCTCAGGGTGCAGGGAATTGTGTGCAGCCACCTGATGGCCAGGATTTCACCCTGAAGCCCAAAAAGACAAGAGGAAAAAAAAAAGCTGCAAAGCCAGTAGAGGTAGCAATGGACACTACGCTGAAAGAAACACCAATGAAAAATAAGAAAAAGAAGAAAGGTTCCAAATGA</dnaseq>| | sequence = <dnaseq>ATGTTGATGCTGGCTGAGCAGCAGCAGAAGCAGAAGTGGGCTGTGAATACTCAAAACACTGCCTGGAGTAATGCTGATTCTAAATTTGGCCAGAGGATACTAGAGAAGATGGAATGGTCTAAAGGAAGGGGTTTAGGGGTTCAGGAGCAAGGAGGCCCAGATGATATTAAAGTTCAAGTTAAAAATAACGACCTGGGACTTCAAGCTACAATCAATAATGAAGCCAACTGGATTGCCCATCAAGATGATTTTAACTGGCTTCTGGCGGAACTGAACACTTGTCAGAGGCAGGAAACAGCAGACTCCTTAGACAACAAGAAAAAGAAATATTTTAGTCTTGAAGAAATTCCAAAATCTTCAAAAACTGTGTTCATCATAGGAAATTTACAAAAGAAAAGGATCTATCATCTCGGAGCAAAACAGATCGTGACTGCATTTTTGGGAAAAAACAGAGTAAGAAGACTCCCGAGGGTAATTCCAGTCCCTCCACTCCAGACAGAACAAAACCACGATGACAACCCATGCCTTCACCATCCAGGAGCGTTTTGCCAAGCGAATGGCAGCACTGAAGAACAAGCCCCAGGTTGCAGCTCCAGGGCCTGACATTTCCAAGACCCAAGTGGAATGCAAAAGGGGGAAGAAAAGAAACAAAGAGGCAACAGGTAAAAATGGGGAGAGTTACCCCCCAACACAGCCTAAGGCCAAGCGGCCTAAAGAGGGAAAGCCTAAGAGAGACAAGGTCCAGAAGTCGGCATCCAAGGAGAAAAGAGCACGGACAGACGGACAGTGCAGAGGCCTCTGCTGGGAAGAGAGTTCTGAGGCCTCTGCTCAGGGTGCAGGGAATTGTGTGCAGCCACCTGATGGCCAGGATTTCACCCTGAAGCCCAAAAAGACAAGAGGAAAAAAAAAAGCTGCAAAGCCAGTAGAGGTAGCAATGGACACTACGCTGAAAGAAACACCAATGAAAAATAAGAAAAAGAAGAAAGGTTCCAAATGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG044630]] | + | [[Category:Intergenic]][[Category:NONHSAG044630]][[Category:Transcripts]] |
Latest revision as of 01:59, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114520 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
997 nt |
Genomic location |
chr6-:112646955..112647951 |
Exon number |
1 |
Exons |
112646955..112647951 |
Genome context |
|
Sequence |
000001 ATGTTGATGC TGGCTGAGCA GCAGCAGAAG CAGAAGTGGG CTGTGAATAC TCAAAACACT GCCTGGAGTA ATGCTGATTC 000080
000081 TAAATTTGGC CAGAGGATAC TAGAGAAGAT GGAATGGTCT AAAGGAAGGG GTTTAGGGGT TCAGGAGCAA GGAGGCCCAG 000160 000161 ATGATATTAA AGTTCAAGTT AAAAATAACG ACCTGGGACT TCAAGCTACA ATCAATAATG AAGCCAACTG GATTGCCCAT 000240 000241 CAAGATGATT TTAACTGGCT TCTGGCGGAA CTGAACACTT GTCAGAGGCA GGAAACAGCA GACTCCTTAG ACAACAAGAA 000320 000321 AAAGAAATAT TTTAGTCTTG AAGAAATTCC AAAATCTTCA AAAACTGTGT TCATCATAGG AAATTTACAA AAGAAAAGGA 000400 000401 TCTATCATCT CGGAGCAAAA CAGATCGTGA CTGCATTTTT GGGAAAAAAC AGAGTAAGAA GACTCCCGAG GGTAATTCCA 000480 000481 GTCCCTCCAC TCCAGACAGA ACAAAACCAC GATGACAACC CATGCCTTCA CCATCCAGGA GCGTTTTGCC AAGCGAATGG 000560 000561 CAGCACTGAA GAACAAGCCC CAGGTTGCAG CTCCAGGGCC TGACATTTCC AAGACCCAAG TGGAATGCAA AAGGGGGAAG 000640 000641 AAAAGAAACA AAGAGGCAAC AGGTAAAAAT GGGGAGAGTT ACCCCCCAAC ACAGCCTAAG GCCAAGCGGC CTAAAGAGGG 000720 000721 AAAGCCTAAG AGAGACAAGG TCCAGAAGTC GGCATCCAAG GAGAAAAGAG CACGGACAGA CGGACAGTGC AGAGGCCTCT 000800 000801 GCTGGGAAGA GAGTTCTGAG GCCTCTGCTC AGGGTGCAGG GAATTGTGTG CAGCCACCTG ATGGCCAGGA TTTCACCCTG 000880 000881 AAGCCCAAAA AGACAAGAGG AAAAAAAAAA GCTGCAAAGC CAGTAGAGGT AGCAATGGAC ACTACGCTGA AAGAAACACC 000960 000961 AATGAAAAAT AAGAAAAAGA AGAAAGGTTC CAAATGA |
Predicted Small Protein
Name | NONHSAT114520_smProtein_668:880 |
Length | 71 |
Molecular weight | 7920.0633 |
Aromaticity | 0.0 |
Instability index | 73.6057142857 |
Isoelectric point | 11.9378051758 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0249887896947 |
Amino acid sequence | MGRVTPQHSLRPSGLKRESLRETRSRSRHPRRKEHGQTDSAEASAGKRVLRPLLRVQGIV CSHLMARISP |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLHHHHLLLLEELLHHHHHLLEE HHHHEEEELL |
PRMN | - |
PiMo | - |