Difference between revisions of "NONHSAT114520"

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sequence = <dnaseq>ATGTTGATGCTGGCTGAGCAGCAGCAGAAGCAGAAGTGGGCTGTGAATACTCAAAACACTGCCTGGAGTAATGCTGATTCTAAATTTGGCCAGAGGATACTAGAGAAGATGGAATGGTCTAAAGGAAGGGGTTTAGGGGTTCAGGAGCAAGGAGGCCCAGATGATATTAAAGTTCAAGTTAAAAATAACGACCTGGGACTTCAAGCTACAATCAATAATGAAGCCAACTGGATTGCCCATCAAGATGATTTTAACTGGCTTCTGGCGGAACTGAACACTTGTCAGAGGCAGGAAACAGCAGACTCCTTAGACAACAAGAAAAAGAAATATTTTAGTCTTGAAGAAATTCCAAAATCTTCAAAAACTGTGTTCATCATAGGAAATTTACAAAAGAAAAGGATCTATCATCTCGGAGCAAAACAGATCGTGACTGCATTTTTGGGAAAAAACAGAGTAAGAAGACTCCCGAGGGTAATTCCAGTCCCTCCACTCCAGACAGAACAAAACCACGATGACAACCCATGCCTTCACCATCCAGGAGCGTTTTGCCAAGCGAATGGCAGCACTGAAGAACAAGCCCCAGGTTGCAGCTCCAGGGCCTGACATTTCCAAGACCCAAGTGGAATGCAAAAGGGGGAAGAAAAGAAACAAAGAGGCAACAGGTAAAAATGGGGAGAGTTACCCCCCAACACAGCCTAAGGCCAAGCGGCCTAAAGAGGGAAAGCCTAAGAGAGACAAGGTCCAGAAGTCGGCATCCAAGGAGAAAAGAGCACGGACAGACGGACAGTGCAGAGGCCTCTGCTGGGAAGAGAGTTCTGAGGCCTCTGCTCAGGGTGCAGGGAATTGTGTGCAGCCACCTGATGGCCAGGATTTCACCCTGAAGCCCAAAAAGACAAGAGGAAAAAAAAAAGCTGCAAAGCCAGTAGAGGTAGCAATGGACACTACGCTGAAAGAAACACCAATGAAAAATAAGAAAAAGAAGAAAGGTTCCAAATGA</dnaseq>|
 
sequence = <dnaseq>ATGTTGATGCTGGCTGAGCAGCAGCAGAAGCAGAAGTGGGCTGTGAATACTCAAAACACTGCCTGGAGTAATGCTGATTCTAAATTTGGCCAGAGGATACTAGAGAAGATGGAATGGTCTAAAGGAAGGGGTTTAGGGGTTCAGGAGCAAGGAGGCCCAGATGATATTAAAGTTCAAGTTAAAAATAACGACCTGGGACTTCAAGCTACAATCAATAATGAAGCCAACTGGATTGCCCATCAAGATGATTTTAACTGGCTTCTGGCGGAACTGAACACTTGTCAGAGGCAGGAAACAGCAGACTCCTTAGACAACAAGAAAAAGAAATATTTTAGTCTTGAAGAAATTCCAAAATCTTCAAAAACTGTGTTCATCATAGGAAATTTACAAAAGAAAAGGATCTATCATCTCGGAGCAAAACAGATCGTGACTGCATTTTTGGGAAAAAACAGAGTAAGAAGACTCCCGAGGGTAATTCCAGTCCCTCCACTCCAGACAGAACAAAACCACGATGACAACCCATGCCTTCACCATCCAGGAGCGTTTTGCCAAGCGAATGGCAGCACTGAAGAACAAGCCCCAGGTTGCAGCTCCAGGGCCTGACATTTCCAAGACCCAAGTGGAATGCAAAAGGGGGAAGAAAAGAAACAAAGAGGCAACAGGTAAAAATGGGGAGAGTTACCCCCCAACACAGCCTAAGGCCAAGCGGCCTAAAGAGGGAAAGCCTAAGAGAGACAAGGTCCAGAAGTCGGCATCCAAGGAGAAAAGAGCACGGACAGACGGACAGTGCAGAGGCCTCTGCTGGGAAGAGAGTTCTGAGGCCTCTGCTCAGGGTGCAGGGAATTGTGTGCAGCCACCTGATGGCCAGGATTTCACCCTGAAGCCCAAAAAGACAAGAGGAAAAAAAAAAGCTGCAAAGCCAGTAGAGGTAGCAATGGACACTACGCTGAAAGAAACACCAATGAAAAATAAGAAAAAGAAGAAAGGTTCCAAATGA</dnaseq>|
 
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}}
[[Category:Intergenic]][[Category:NONHSAG044630]]
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[[Category:Intergenic]][[Category:NONHSAG044630]][[Category:Transcripts]]

Latest revision as of 01:59, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT114520

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

997 nt

Genomic location

chr6-:112646955..112647951

Exon number

1

Exons

112646955..112647951

Genome context

Sequence
000001 ATGTTGATGC TGGCTGAGCA GCAGCAGAAG CAGAAGTGGG CTGTGAATAC TCAAAACACT GCCTGGAGTA ATGCTGATTC 000080
000081 TAAATTTGGC CAGAGGATAC TAGAGAAGAT GGAATGGTCT AAAGGAAGGG GTTTAGGGGT TCAGGAGCAA GGAGGCCCAG 000160
000161 ATGATATTAA AGTTCAAGTT AAAAATAACG ACCTGGGACT TCAAGCTACA ATCAATAATG AAGCCAACTG GATTGCCCAT 000240
000241 CAAGATGATT TTAACTGGCT TCTGGCGGAA CTGAACACTT GTCAGAGGCA GGAAACAGCA GACTCCTTAG ACAACAAGAA 000320
000321 AAAGAAATAT TTTAGTCTTG AAGAAATTCC AAAATCTTCA AAAACTGTGT TCATCATAGG AAATTTACAA AAGAAAAGGA 000400
000401 TCTATCATCT CGGAGCAAAA CAGATCGTGA CTGCATTTTT GGGAAAAAAC AGAGTAAGAA GACTCCCGAG GGTAATTCCA 000480
000481 GTCCCTCCAC TCCAGACAGA ACAAAACCAC GATGACAACC CATGCCTTCA CCATCCAGGA GCGTTTTGCC AAGCGAATGG 000560
000561 CAGCACTGAA GAACAAGCCC CAGGTTGCAG CTCCAGGGCC TGACATTTCC AAGACCCAAG TGGAATGCAA AAGGGGGAAG 000640
000641 AAAAGAAACA AAGAGGCAAC AGGTAAAAAT GGGGAGAGTT ACCCCCCAAC ACAGCCTAAG GCCAAGCGGC CTAAAGAGGG 000720
000721 AAAGCCTAAG AGAGACAAGG TCCAGAAGTC GGCATCCAAG GAGAAAAGAG CACGGACAGA CGGACAGTGC AGAGGCCTCT 000800
000801 GCTGGGAAGA GAGTTCTGAG GCCTCTGCTC AGGGTGCAGG GAATTGTGTG CAGCCACCTG ATGGCCAGGA TTTCACCCTG 000880
000881 AAGCCCAAAA AGACAAGAGG AAAAAAAAAA GCTGCAAAGC CAGTAGAGGT AGCAATGGAC ACTACGCTGA AAGAAACACC 000960
000961 AATGAAAAAT AAGAAAAAGA AGAAAGGTTC CAAATGA
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Predicted Small Protein

Name NONHSAT114520_smProtein_668:880
Length 71
Molecular weight 7920.0633
Aromaticity 0.0
Instability index 73.6057142857
Isoelectric point 11.9378051758
Runs 13
Runs residual 0.0408769448373
Runs probability 0.0249887896947
Amino acid sequence MGRVTPQHSLRPSGLKRESLRETRSRSRHPRRKEHGQTDSAEASAGKRVLRPLLRVQGIV
CSHLMARISP
Secondary structure LLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLHHHHLLLLEELLHHHHHLLEE
HHHHEEEELL
PRMN -
PiMo -