Difference between revisions of "NONHSAT133818"
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sequence = <dnaseq>CAAGAGTCTCGATCGTCCTCCAACCTTTCATCTGTCCCAGGATTAAGATTTCACCTGATGACACGCCCAGAAGTGCGGGAAGGACTGGCCAAGTGGAAGTCTACCACGCGATGCTCGTGGACTGACTGAGGAGTACCCAGCCCGGAGCGCGCTCAGCCTGTGGCCGGCCTCCTCACCAAGGGGTAGGCAGGTGCCCAGAATGCTGGAGGATGCCCGGTAAGGGCACCCGAGTCGCCAGCGGTACCTGTCTGAAGGCGCCCACCCATCCCCGGAAATTTCCTATGCACATACAAGCTTACTGTTGAAGTCCTCTCATCCAATGCACTCAGAACGGgactgtaagtccagctgctgtgtatcatcacctcagcccgattggtcctcggccacacttcacttcagcttctgataggtcctgggccaagctaagcagcatctatgaatcatttcacctcctgactggtcccgggccaagccgagtcacgcattcgccaagacagcccccagactaagcacattccttccccttccgtccataaaaacctggaccccagcctcatgatgggcactcccgttcgggaccccctctctgctggcagagagctttcttctttcaccttattaaactttcac</dnaseq>| | sequence = <dnaseq>CAAGAGTCTCGATCGTCCTCCAACCTTTCATCTGTCCCAGGATTAAGATTTCACCTGATGACACGCCCAGAAGTGCGGGAAGGACTGGCCAAGTGGAAGTCTACCACGCGATGCTCGTGGACTGACTGAGGAGTACCCAGCCCGGAGCGCGCTCAGCCTGTGGCCGGCCTCCTCACCAAGGGGTAGGCAGGTGCCCAGAATGCTGGAGGATGCCCGGTAAGGGCACCCGAGTCGCCAGCGGTACCTGTCTGAAGGCGCCCACCCATCCCCGGAAATTTCCTATGCACATACAAGCTTACTGTTGAAGTCCTCTCATCCAATGCACTCAGAACGGgactgtaagtccagctgctgtgtatcatcacctcagcccgattggtcctcggccacacttcacttcagcttctgataggtcctgggccaagctaagcagcatctatgaatcatttcacctcctgactggtcccgggccaagccgagtcacgcattcgccaagacagcccccagactaagcacattccttccccttccgtccataaaaacctggaccccagcctcatgatgggcactcccgttcgggaccccctctctgctggcagagagctttcttctttcaccttattaaactttcac</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG053108]] | + | [[Category:Antisense]][[Category:NONHSAG053108]][[Category:Transcripts]] |
Latest revision as of 02:32, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT133818 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
633 nt |
| Genomic location |
chr9-:108316326..108320746 |
| Exon number |
3 |
| Exons |
108316326..108316624,108319395..108319456,108320475..108320746 |
| Genome context |
|
| Sequence |
000001 CAAGAGTCTC GATCGTCCTC CAACCTTTCA TCTGTCCCAG GATTAAGATT TCACCTGATG ACACGCCCAG AAGTGCGGGA 000080
000081 AGGACTGGCC AAGTGGAAGT CTACCACGCG ATGCTCGTGG ACTGACTGAG GAGTACCCAG CCCGGAGCGC GCTCAGCCTG 000160 000161 TGGCCGGCCT CCTCACCAAG GGGTAGGCAG GTGCCCAGAA TGCTGGAGGA TGCCCGGTAA GGGCACCCGA GTCGCCAGCG 000240 000241 GTACCTGTCT GAAGGCGCCC ACCCATCCCC GGAAATTTCC TATGCACATA CAAGCTTACT GTTGAAGTCC TCTCATCCAA 000320 000321 TGCACTCAGA ACGGgactgt aagtccagct gctgtgtatc atcacctcag cccgattggt cctcggccac acttcacttc 000400 000401 agcttctgat aggtcctggg ccaagctaag cagcatctat gaatcatttc acctcctgac tggtcccggg ccaagccgag 000480 000481 tcacgcattc gccaagacag cccccagact aagcacattc cttccccttc cgtccataaa aacctggacc ccagcctcat 000560 000561 gatgggcact cccgttcggg accccctctc tgctggcaga gagctttctt ctttcacctt attaaacttt cac |
Predicted Small Protein
| Name | NONHSAT133818_smProtein_209:304 |
| Length | 32 |
| Molecular weight | 3385.0198 |
| Aromaticity | 0.0645161290323 |
| Instability index | 55.6548387097 |
| Isoelectric point | 10.0602416992 |
| Runs | 6 |
| Runs residual | 0.00772849462366 |
| Runs probability | 0.0215656833305 |
| Amino acid sequence | MPGKGTRVASGTCLKAPTHPRKFPMHIQAYC |
| Secondary structure | LLLLLEEELLLLLLLLLLLLLLLLHHHEELL |
| PRMN | - |
| PiMo | - |
