Difference between revisions of "NONHSAT069480"
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sequence = <dnaseq>ATTCAGGCAGTTAAACTCAAGAGAAAACAACTGGGTAGTGAAAACAGAAAAATGACTGACATTTGCGGATTTCTGTTGTTGATCCTGCACTGATTAGGACCAAGCAGGAGTCTCCAGCTGCCACGCAGAAGGAAAGAGGCAGATCTTTGAAGGATGGTTTCTAACAACTTGTGAAGTTACCTGGGGTTAGACGGGAGTTCTGGCCAAAATTGCAAATCCTTCAAATCTCCCAGAAGAGCAGAAGAAAAACAACTCAACAATATTTAAGAAAGTTAACTGGTGAGGTTAACTCAGAACCCCCAGGTGAATTAGGTCATCTCTGTCCCCTCCCCTGAAGACCTCGTGAACTCTGAGGGTATGAAATGGAATTGAGAGTTGGGGACTGCATTCTCCAGAGATCGATGATGAAGGAGTTGAGAAAACAAGCTTCATCCCCTAACCCCAAAAAACAATTTACCTCACTAGTACAAAGCCATTTGGTAGAATCTGTGTTATAGAATCAGGTAACTTGAAGAAATGATGTGAAGTCATCCAGTTTATCCCCTACTTTCAAATAACTAACAAGGTTGCACTGAATTACTTCCTTGCCTTCAGACATGTACTAGGATGAACTCTATGGCGTTCTTCAGGACTTGCATTATTTCAAAAAGTCCTTTGGTAATCCTTTCCAATGTCTGACCAACACCAACCACCCAATTAATATCTAACCTAAACCCTTCCTGTTACTTATTTAAGTCATTTATTTTCTTTGATACCTTGGGAGACATGGGACAGCAGCAGGTCTCCTTTTCAGGAATCTTTCTCAATGCGTGAACTGCCCTTATTATAATGCAGAGTGAGTGAAACATTCGAGGGAGAATCTCAAAAACATGAATTGTTTAATTCTCAAATAATAAAGGAAATCTGGTAAAGTTATGGTTTTGACTTTTCCACCTACTAGCTCTGTGCTCT</dnaseq>| | sequence = <dnaseq>ATTCAGGCAGTTAAACTCAAGAGAAAACAACTGGGTAGTGAAAACAGAAAAATGACTGACATTTGCGGATTTCTGTTGTTGATCCTGCACTGATTAGGACCAAGCAGGAGTCTCCAGCTGCCACGCAGAAGGAAAGAGGCAGATCTTTGAAGGATGGTTTCTAACAACTTGTGAAGTTACCTGGGGTTAGACGGGAGTTCTGGCCAAAATTGCAAATCCTTCAAATCTCCCAGAAGAGCAGAAGAAAAACAACTCAACAATATTTAAGAAAGTTAACTGGTGAGGTTAACTCAGAACCCCCAGGTGAATTAGGTCATCTCTGTCCCCTCCCCTGAAGACCTCGTGAACTCTGAGGGTATGAAATGGAATTGAGAGTTGGGGACTGCATTCTCCAGAGATCGATGATGAAGGAGTTGAGAAAACAAGCTTCATCCCCTAACCCCAAAAAACAATTTACCTCACTAGTACAAAGCCATTTGGTAGAATCTGTGTTATAGAATCAGGTAACTTGAAGAAATGATGTGAAGTCATCCAGTTTATCCCCTACTTTCAAATAACTAACAAGGTTGCACTGAATTACTTCCTTGCCTTCAGACATGTACTAGGATGAACTCTATGGCGTTCTTCAGGACTTGCATTATTTCAAAAAGTCCTTTGGTAATCCTTTCCAATGTCTGACCAACACCAACCACCCAATTAATATCTAACCTAAACCCTTCCTGTTACTTATTTAAGTCATTTATTTTCTTTGATACCTTGGGAGACATGGGACAGCAGCAGGTCTCCTTTTCAGGAATCTTTCTCAATGCGTGAACTGCCCTTATTATAATGCAGAGTGAGTGAAACATTCGAGGGAGAATCTCAAAAACATGAATTGTTTAATTCTCAAATAATAAAGGAAATCTGGTAAAGTTATGGTTTTGACTTTTCCACCTACTAGCTCTGTGCTCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG027180]] | + | [[Category:Intergenic]][[Category:NONHSAG027180]][[Category:Transcripts]] |
Latest revision as of 23:13, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT069480 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
951 nt |
| Genomic location |
chr2-:21316951..21319473 |
| Exon number |
2 |
| Exons |
21316951..21317683,21319226..21319473 |
| Genome context |
|
| Sequence |
000001 ATTCAGGCAG TTAAACTCAA GAGAAAACAA CTGGGTAGTG AAAACAGAAA AATGACTGAC ATTTGCGGAT TTCTGTTGTT 000080
000081 GATCCTGCAC TGATTAGGAC CAAGCAGGAG TCTCCAGCTG CCACGCAGAA GGAAAGAGGC AGATCTTTGA AGGATGGTTT 000160 000161 CTAACAACTT GTGAAGTTAC CTGGGGTTAG ACGGGAGTTC TGGCCAAAAT TGCAAATCCT TCAAATCTCC CAGAAGAGCA 000240 000241 GAAGAAAAAC AACTCAACAA TATTTAAGAA AGTTAACTGG TGAGGTTAAC TCAGAACCCC CAGGTGAATT AGGTCATCTC 000320 000321 TGTCCCCTCC CCTGAAGACC TCGTGAACTC TGAGGGTATG AAATGGAATT GAGAGTTGGG GACTGCATTC TCCAGAGATC 000400 000401 GATGATGAAG GAGTTGAGAA AACAAGCTTC ATCCCCTAAC CCCAAAAAAC AATTTACCTC ACTAGTACAA AGCCATTTGG 000480 000481 TAGAATCTGT GTTATAGAAT CAGGTAACTT GAAGAAATGA TGTGAAGTCA TCCAGTTTAT CCCCTACTTT CAAATAACTA 000560 000561 ACAAGGTTGC ACTGAATTAC TTCCTTGCCT TCAGACATGT ACTAGGATGA ACTCTATGGC GTTCTTCAGG ACTTGCATTA 000640 000641 TTTCAAAAAG TCCTTTGGTA ATCCTTTCCA ATGTCTGACC AACACCAACC ACCCAATTAA TATCTAACCT AAACCCTTCC 000720 000721 TGTTACTTAT TTAAGTCATT TATTTTCTTT GATACCTTGG GAGACATGGG ACAGCAGCAG GTCTCCTTTT CAGGAATCTT 000800 000801 TCTCAATGCG TGAACTGCCC TTATTATAAT GCAGAGTGAG TGAAACATTC GAGGGAGAAT CTCAAAAACA TGAATTGTTT 000880 000881 AATTCTCAAA TAATAAAGGA AATCTGGTAA AGTTATGGTT TTGACTTTTC CACCTACTAG CTCTGTGCTC T |
Predicted Small Protein
| Name | NONHSAT069480_smProtein_362:496 |
| Length | 45 |
| Molecular weight | 5043.9089 |
| Aromaticity | 0.0227272727273 |
| Instability index | 74.8204545455 |
| Isoelectric point | 9.62298583984 |
| Runs | 7 |
| Runs residual | 0.00401069518717 |
| Runs probability | 0.0135892194716 |
| Amino acid sequence | MELRVGDCILQRSMMKELRKQASSPNPKKQFTSLVQSHLVESVL |
| Secondary structure | LEEELLLLHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
