Difference between revisions of "NONHSAT092146"

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sequence = <dnaseq>TTATAATCATGTGTTACTTCATGGCTACCTGTTTTCTCTATGGGAAGAAGTTCTTCACATGAGAGTTTATTTTAGTAGTGATAGATAAAGCTTCTACTCTCTTCAGGGACTTTTCTTAAAGTTGACTTTACTATAACAACAGACAGTTCTTCAGTTTTCAGTTTTATTGCTATTTCTGCTAGAACACCTCATCCACCAGCTTGGCCCCATAAATGATAGTGGTCTCTCAAAGCATGTCCCACCAGACAAATGAAGACTGTCATTCAGACTTTGCCTCCAGCAATTACCTAGGATTCCCTGGAATAAGAGGACTCAGTGTCATTATCCCCTCCAGAAAACAGCCAGTCCTGAGCATGCAGGGTTGCCAGCCTCAATTTCATCGTTTGCTTTTCTGCTTTTAAATGTTTGCAAACAATAGCAGTCCATGTCACATGTTTTATTCTTTTTAGATTAATGAGGTGGCCTGTTCAAGTTAGACAGGCCATATTAATTTCAGCGAATGCGGTCCTTAGCACCACAAAAGCAAACAAATGATTTTAACTCAACTGGACAAAGAGTCTTGGCATAGTAGGTGCGTAATTGTTGGTTTTTGGATTTGACTGGAGAGTGAGAGTTGTGATTTTGATTCTCCAAAAGCAGACTATATGAGCACCAAGTATATTTTAGGTCATTTAGAAAGTTTGTTGTTTGAACAAATGAGGATAAGACATCCATCAGTTTTTGACACTGCACCAAATCTGCTTGATTTCAAAAGGAACTAACTAAACACTCCATCACAAGAGTCCTGACAAAGATGCACGGATGGCTATATTAACGAGACTGTGTCAAAATGAATAATAATAAATGGCTGTCTTGAGAATCCAACGTAAATTTCCTTATCTAAAATAGTGGTTTGTTTAAATGATGAAGCAAAGATGGCATTGGAGCTGTTGGCTGACTGTCCCTTTTTTTCTGCTAACTGCAGAAGCACGGAATCTGATGCCCTACTTTGTGGGGTAATGGTGTGCTTATCTCCCCCTCCTCAAACAGAGTTTGGCACGTTGCTAATAACAGCCAGCCTACTGCTAAAATATCAATGACAGAACAGAAGAAATAGATATTTAGGAAAACATAAATCAAAGCTGAGGAAGTAGGCAAAAAAAAAGCACTGATAGAAAGCAAATAAAGAAAGATCTATAATATTGGGACAGGCAGCATCTCCCTGCTCACATGGTAATTTTCTTTAGCCAGTAACCAACGAGGATGCCTGCCATGGGAAGAAGGTGTGATTTTGTGATTTAATGATCCAAAGCCCATTTTTAGACACCACTTAGCCATAAAGAGAGGCCCAAGTTTCTGTGGTCCAGGAGTCATTGAGATAAGTATTTATGACAAGGTCCACCCAAACACAAGGGGACACAAGAAGGGGGCATGTCAGGCACAGGGAATTTTCACAGTGGCTTACAAAGGCAAGTCTTACTCTTACCTAACACAGTAGTTCTCCACACTGGCTGCATGTTAGATCCCCACAGAAGAGCTTTTAAAATCCCCAATCCAATATTCTTGGAATTGGGGGGCAGGAGAGAGTAGGAGACCCAGTCATTAGAGGTTTTTAAAGCTCCCCAGTTAAATATTTAACTCCCATTTGAAGAGGGGCTAATAAGCTGAGATTAAGAAATACTGACCTAAAACAACATGACGTAGACAGGCAAATCATTTGTGGAACTCAGGCCAGTTAATTGGTCATCTCCCTGAAATAATTCAAATTGGAGAAAATTCTGTACAAATGTAGTAATAGTGATGTTTTATATGTGTATAGTATTTTAAATTTTAAGGTGTTTTTATGTTCATGTCAGGGTGCTCTCAGGAAAATGCTTAGCATCTTGTAAAACTGCAAATGTTAGATATCATCAACCCAGTGTTATAATTGAGAAAACAAGCAGAGTGCAAGTCTAGGACTTATTTGGAGTCTCACCAAAGAAGTGGCTGGCAAAGCCTAAAATTGGGGCACTGGACACTTTCCTATATTCTTCTATCCTGGGAATCATGATTTCCTTTGAAGAATGCTGTAAAATGTTGAGTGTATTTGTTTTTGTCTGTTATGAACTGTGATTGGCCTCACACATAAATAATGAATTCTTTTAGGTTGCTTTAGGAATGTGTTACTTTAGTATCTCAAATCAATAATACAATCACAAGTGAAAC</dnaseq>|
 
sequence = <dnaseq>TTATAATCATGTGTTACTTCATGGCTACCTGTTTTCTCTATGGGAAGAAGTTCTTCACATGAGAGTTTATTTTAGTAGTGATAGATAAAGCTTCTACTCTCTTCAGGGACTTTTCTTAAAGTTGACTTTACTATAACAACAGACAGTTCTTCAGTTTTCAGTTTTATTGCTATTTCTGCTAGAACACCTCATCCACCAGCTTGGCCCCATAAATGATAGTGGTCTCTCAAAGCATGTCCCACCAGACAAATGAAGACTGTCATTCAGACTTTGCCTCCAGCAATTACCTAGGATTCCCTGGAATAAGAGGACTCAGTGTCATTATCCCCTCCAGAAAACAGCCAGTCCTGAGCATGCAGGGTTGCCAGCCTCAATTTCATCGTTTGCTTTTCTGCTTTTAAATGTTTGCAAACAATAGCAGTCCATGTCACATGTTTTATTCTTTTTAGATTAATGAGGTGGCCTGTTCAAGTTAGACAGGCCATATTAATTTCAGCGAATGCGGTCCTTAGCACCACAAAAGCAAACAAATGATTTTAACTCAACTGGACAAAGAGTCTTGGCATAGTAGGTGCGTAATTGTTGGTTTTTGGATTTGACTGGAGAGTGAGAGTTGTGATTTTGATTCTCCAAAAGCAGACTATATGAGCACCAAGTATATTTTAGGTCATTTAGAAAGTTTGTTGTTTGAACAAATGAGGATAAGACATCCATCAGTTTTTGACACTGCACCAAATCTGCTTGATTTCAAAAGGAACTAACTAAACACTCCATCACAAGAGTCCTGACAAAGATGCACGGATGGCTATATTAACGAGACTGTGTCAAAATGAATAATAATAAATGGCTGTCTTGAGAATCCAACGTAAATTTCCTTATCTAAAATAGTGGTTTGTTTAAATGATGAAGCAAAGATGGCATTGGAGCTGTTGGCTGACTGTCCCTTTTTTTCTGCTAACTGCAGAAGCACGGAATCTGATGCCCTACTTTGTGGGGTAATGGTGTGCTTATCTCCCCCTCCTCAAACAGAGTTTGGCACGTTGCTAATAACAGCCAGCCTACTGCTAAAATATCAATGACAGAACAGAAGAAATAGATATTTAGGAAAACATAAATCAAAGCTGAGGAAGTAGGCAAAAAAAAAGCACTGATAGAAAGCAAATAAAGAAAGATCTATAATATTGGGACAGGCAGCATCTCCCTGCTCACATGGTAATTTTCTTTAGCCAGTAACCAACGAGGATGCCTGCCATGGGAAGAAGGTGTGATTTTGTGATTTAATGATCCAAAGCCCATTTTTAGACACCACTTAGCCATAAAGAGAGGCCCAAGTTTCTGTGGTCCAGGAGTCATTGAGATAAGTATTTATGACAAGGTCCACCCAAACACAAGGGGACACAAGAAGGGGGCATGTCAGGCACAGGGAATTTTCACAGTGGCTTACAAAGGCAAGTCTTACTCTTACCTAACACAGTAGTTCTCCACACTGGCTGCATGTTAGATCCCCACAGAAGAGCTTTTAAAATCCCCAATCCAATATTCTTGGAATTGGGGGGCAGGAGAGAGTAGGAGACCCAGTCATTAGAGGTTTTTAAAGCTCCCCAGTTAAATATTTAACTCCCATTTGAAGAGGGGCTAATAAGCTGAGATTAAGAAATACTGACCTAAAACAACATGACGTAGACAGGCAAATCATTTGTGGAACTCAGGCCAGTTAATTGGTCATCTCCCTGAAATAATTCAAATTGGAGAAAATTCTGTACAAATGTAGTAATAGTGATGTTTTATATGTGTATAGTATTTTAAATTTTAAGGTGTTTTTATGTTCATGTCAGGGTGCTCTCAGGAAAATGCTTAGCATCTTGTAAAACTGCAAATGTTAGATATCATCAACCCAGTGTTATAATTGAGAAAACAAGCAGAGTGCAAGTCTAGGACTTATTTGGAGTCTCACCAAAGAAGTGGCTGGCAAAGCCTAAAATTGGGGCACTGGACACTTTCCTATATTCTTCTATCCTGGGAATCATGATTTCCTTTGAAGAATGCTGTAAAATGTTGAGTGTATTTGTTTTTGTCTGTTATGAACTGTGATTGGCCTCACACATAAATAATGAATTCTTTTAGGTTGCTTTAGGAATGTGTTACTTTAGTATCTCAAATCAATAATACAATCACAAGTGAAAC</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG036098]]
+
[[Category:Intergenic]][[Category:NONHSAG036098]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 00:41, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT092146

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2184 nt

Genomic location

chr3-:131173972..131176155

Exon number

1

Exons

131173972..131176155

Genome context

Sequence
000001 TTATAATCAT GTGTTACTTC ATGGCTACCT GTTTTCTCTA TGGGAAGAAG TTCTTCACAT GAGAGTTTAT TTTAGTAGTG 000080
000081 ATAGATAAAG CTTCTACTCT CTTCAGGGAC TTTTCTTAAA GTTGACTTTA CTATAACAAC AGACAGTTCT TCAGTTTTCA 000160
000161 GTTTTATTGC TATTTCTGCT AGAACACCTC ATCCACCAGC TTGGCCCCAT AAATGATAGT GGTCTCTCAA AGCATGTCCC 000240
000241 ACCAGACAAA TGAAGACTGT CATTCAGACT TTGCCTCCAG CAATTACCTA GGATTCCCTG GAATAAGAGG ACTCAGTGTC 000320
000321 ATTATCCCCT CCAGAAAACA GCCAGTCCTG AGCATGCAGG GTTGCCAGCC TCAATTTCAT CGTTTGCTTT TCTGCTTTTA 000400
000401 AATGTTTGCA AACAATAGCA GTCCATGTCA CATGTTTTAT TCTTTTTAGA TTAATGAGGT GGCCTGTTCA AGTTAGACAG 000480
000481 GCCATATTAA TTTCAGCGAA TGCGGTCCTT AGCACCACAA AAGCAAACAA ATGATTTTAA CTCAACTGGA CAAAGAGTCT 000560
000561 TGGCATAGTA GGTGCGTAAT TGTTGGTTTT TGGATTTGAC TGGAGAGTGA GAGTTGTGAT TTTGATTCTC CAAAAGCAGA 000640
000641 CTATATGAGC ACCAAGTATA TTTTAGGTCA TTTAGAAAGT TTGTTGTTTG AACAAATGAG GATAAGACAT CCATCAGTTT 000720
000721 TTGACACTGC ACCAAATCTG CTTGATTTCA AAAGGAACTA ACTAAACACT CCATCACAAG AGTCCTGACA AAGATGCACG 000800
000801 GATGGCTATA TTAACGAGAC TGTGTCAAAA TGAATAATAA TAAATGGCTG TCTTGAGAAT CCAACGTAAA TTTCCTTATC 000880
000881 TAAAATAGTG GTTTGTTTAA ATGATGAAGC AAAGATGGCA TTGGAGCTGT TGGCTGACTG TCCCTTTTTT TCTGCTAACT 000960
000961 GCAGAAGCAC GGAATCTGAT GCCCTACTTT GTGGGGTAAT GGTGTGCTTA TCTCCCCCTC CTCAAACAGA GTTTGGCACG 001040
001041 TTGCTAATAA CAGCCAGCCT ACTGCTAAAA TATCAATGAC AGAACAGAAG AAATAGATAT TTAGGAAAAC ATAAATCAAA 001120
001121 GCTGAGGAAG TAGGCAAAAA AAAAGCACTG ATAGAAAGCA AATAAAGAAA GATCTATAAT ATTGGGACAG GCAGCATCTC 001200
001201 CCTGCTCACA TGGTAATTTT CTTTAGCCAG TAACCAACGA GGATGCCTGC CATGGGAAGA AGGTGTGATT TTGTGATTTA 001280
001281 ATGATCCAAA GCCCATTTTT AGACACCACT TAGCCATAAA GAGAGGCCCA AGTTTCTGTG GTCCAGGAGT CATTGAGATA 001360
001361 AGTATTTATG ACAAGGTCCA CCCAAACACA AGGGGACACA AGAAGGGGGC ATGTCAGGCA CAGGGAATTT TCACAGTGGC 001440
001441 TTACAAAGGC AAGTCTTACT CTTACCTAAC ACAGTAGTTC TCCACACTGG CTGCATGTTA GATCCCCACA GAAGAGCTTT 001520
001521 TAAAATCCCC AATCCAATAT TCTTGGAATT GGGGGGCAGG AGAGAGTAGG AGACCCAGTC ATTAGAGGTT TTTAAAGCTC 001600
001601 CCCAGTTAAA TATTTAACTC CCATTTGAAG AGGGGCTAAT AAGCTGAGAT TAAGAAATAC TGACCTAAAA CAACATGACG 001680
001681 TAGACAGGCA AATCATTTGT GGAACTCAGG CCAGTTAATT GGTCATCTCC CTGAAATAAT TCAAATTGGA GAAAATTCTG 001760
001761 TACAAATGTA GTAATAGTGA TGTTTTATAT GTGTATAGTA TTTTAAATTT TAAGGTGTTT TTATGTTCAT GTCAGGGTGC 001840
001841 TCTCAGGAAA ATGCTTAGCA TCTTGTAAAA CTGCAAATGT TAGATATCAT CAACCCAGTG TTATAATTGA GAAAACAAGC 001920
001921 AGAGTGCAAG TCTAGGACTT ATTTGGAGTC TCACCAAAGA AGTGGCTGGC AAAGCCTAAA ATTGGGGCAC TGGACACTTT 002000
002001 CCTATATTCT TCTATCCTGG GAATCATGAT TTCCTTTGAA GAATGCTGTA AAATGTTGAG TGTATTTGTT TTTGTCTGTT 002080
002081 ATGAACTGTG ATTGGCCTCA CACATAAATA ATGAATTCTT TTAGGTTGCT TTAGGAATGT GTTACTTTAG TATCTCAAAT 002160
002161 CAATAATACA ATCACAAGTG AAAC
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Predicted Small Protein

Name NONHSAT092146_smProtein_212:400
Length 63
Molecular weight 6971.9766
Aromaticity 0.0967741935484
Instability index 52.2870967742
Isoelectric point 7.78936767578
Runs 10
Runs residual 0.00764976958525
Runs probability 0.0345521992581
Amino acid sequence MIVVSQSMSHQTNEDCHSDFASSNYLGFPGIRGLSVIIPSRKQPVLSMQGCQPQFHRLLF
CF
Secondary structure LEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLLEELLLLLLHHHEEEEE
EL
PRMN -
PiMo -