Difference between revisions of "NONHSAT092146"
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sequence = <dnaseq>TTATAATCATGTGTTACTTCATGGCTACCTGTTTTCTCTATGGGAAGAAGTTCTTCACATGAGAGTTTATTTTAGTAGTGATAGATAAAGCTTCTACTCTCTTCAGGGACTTTTCTTAAAGTTGACTTTACTATAACAACAGACAGTTCTTCAGTTTTCAGTTTTATTGCTATTTCTGCTAGAACACCTCATCCACCAGCTTGGCCCCATAAATGATAGTGGTCTCTCAAAGCATGTCCCACCAGACAAATGAAGACTGTCATTCAGACTTTGCCTCCAGCAATTACCTAGGATTCCCTGGAATAAGAGGACTCAGTGTCATTATCCCCTCCAGAAAACAGCCAGTCCTGAGCATGCAGGGTTGCCAGCCTCAATTTCATCGTTTGCTTTTCTGCTTTTAAATGTTTGCAAACAATAGCAGTCCATGTCACATGTTTTATTCTTTTTAGATTAATGAGGTGGCCTGTTCAAGTTAGACAGGCCATATTAATTTCAGCGAATGCGGTCCTTAGCACCACAAAAGCAAACAAATGATTTTAACTCAACTGGACAAAGAGTCTTGGCATAGTAGGTGCGTAATTGTTGGTTTTTGGATTTGACTGGAGAGTGAGAGTTGTGATTTTGATTCTCCAAAAGCAGACTATATGAGCACCAAGTATATTTTAGGTCATTTAGAAAGTTTGTTGTTTGAACAAATGAGGATAAGACATCCATCAGTTTTTGACACTGCACCAAATCTGCTTGATTTCAAAAGGAACTAACTAAACACTCCATCACAAGAGTCCTGACAAAGATGCACGGATGGCTATATTAACGAGACTGTGTCAAAATGAATAATAATAAATGGCTGTCTTGAGAATCCAACGTAAATTTCCTTATCTAAAATAGTGGTTTGTTTAAATGATGAAGCAAAGATGGCATTGGAGCTGTTGGCTGACTGTCCCTTTTTTTCTGCTAACTGCAGAAGCACGGAATCTGATGCCCTACTTTGTGGGGTAATGGTGTGCTTATCTCCCCCTCCTCAAACAGAGTTTGGCACGTTGCTAATAACAGCCAGCCTACTGCTAAAATATCAATGACAGAACAGAAGAAATAGATATTTAGGAAAACATAAATCAAAGCTGAGGAAGTAGGCAAAAAAAAAGCACTGATAGAAAGCAAATAAAGAAAGATCTATAATATTGGGACAGGCAGCATCTCCCTGCTCACATGGTAATTTTCTTTAGCCAGTAACCAACGAGGATGCCTGCCATGGGAAGAAGGTGTGATTTTGTGATTTAATGATCCAAAGCCCATTTTTAGACACCACTTAGCCATAAAGAGAGGCCCAAGTTTCTGTGGTCCAGGAGTCATTGAGATAAGTATTTATGACAAGGTCCACCCAAACACAAGGGGACACAAGAAGGGGGCATGTCAGGCACAGGGAATTTTCACAGTGGCTTACAAAGGCAAGTCTTACTCTTACCTAACACAGTAGTTCTCCACACTGGCTGCATGTTAGATCCCCACAGAAGAGCTTTTAAAATCCCCAATCCAATATTCTTGGAATTGGGGGGCAGGAGAGAGTAGGAGACCCAGTCATTAGAGGTTTTTAAAGCTCCCCAGTTAAATATTTAACTCCCATTTGAAGAGGGGCTAATAAGCTGAGATTAAGAAATACTGACCTAAAACAACATGACGTAGACAGGCAAATCATTTGTGGAACTCAGGCCAGTTAATTGGTCATCTCCCTGAAATAATTCAAATTGGAGAAAATTCTGTACAAATGTAGTAATAGTGATGTTTTATATGTGTATAGTATTTTAAATTTTAAGGTGTTTTTATGTTCATGTCAGGGTGCTCTCAGGAAAATGCTTAGCATCTTGTAAAACTGCAAATGTTAGATATCATCAACCCAGTGTTATAATTGAGAAAACAAGCAGAGTGCAAGTCTAGGACTTATTTGGAGTCTCACCAAAGAAGTGGCTGGCAAAGCCTAAAATTGGGGCACTGGACACTTTCCTATATTCTTCTATCCTGGGAATCATGATTTCCTTTGAAGAATGCTGTAAAATGTTGAGTGTATTTGTTTTTGTCTGTTATGAACTGTGATTGGCCTCACACATAAATAATGAATTCTTTTAGGTTGCTTTAGGAATGTGTTACTTTAGTATCTCAAATCAATAATACAATCACAAGTGAAAC</dnaseq>| | sequence = <dnaseq>TTATAATCATGTGTTACTTCATGGCTACCTGTTTTCTCTATGGGAAGAAGTTCTTCACATGAGAGTTTATTTTAGTAGTGATAGATAAAGCTTCTACTCTCTTCAGGGACTTTTCTTAAAGTTGACTTTACTATAACAACAGACAGTTCTTCAGTTTTCAGTTTTATTGCTATTTCTGCTAGAACACCTCATCCACCAGCTTGGCCCCATAAATGATAGTGGTCTCTCAAAGCATGTCCCACCAGACAAATGAAGACTGTCATTCAGACTTTGCCTCCAGCAATTACCTAGGATTCCCTGGAATAAGAGGACTCAGTGTCATTATCCCCTCCAGAAAACAGCCAGTCCTGAGCATGCAGGGTTGCCAGCCTCAATTTCATCGTTTGCTTTTCTGCTTTTAAATGTTTGCAAACAATAGCAGTCCATGTCACATGTTTTATTCTTTTTAGATTAATGAGGTGGCCTGTTCAAGTTAGACAGGCCATATTAATTTCAGCGAATGCGGTCCTTAGCACCACAAAAGCAAACAAATGATTTTAACTCAACTGGACAAAGAGTCTTGGCATAGTAGGTGCGTAATTGTTGGTTTTTGGATTTGACTGGAGAGTGAGAGTTGTGATTTTGATTCTCCAAAAGCAGACTATATGAGCACCAAGTATATTTTAGGTCATTTAGAAAGTTTGTTGTTTGAACAAATGAGGATAAGACATCCATCAGTTTTTGACACTGCACCAAATCTGCTTGATTTCAAAAGGAACTAACTAAACACTCCATCACAAGAGTCCTGACAAAGATGCACGGATGGCTATATTAACGAGACTGTGTCAAAATGAATAATAATAAATGGCTGTCTTGAGAATCCAACGTAAATTTCCTTATCTAAAATAGTGGTTTGTTTAAATGATGAAGCAAAGATGGCATTGGAGCTGTTGGCTGACTGTCCCTTTTTTTCTGCTAACTGCAGAAGCACGGAATCTGATGCCCTACTTTGTGGGGTAATGGTGTGCTTATCTCCCCCTCCTCAAACAGAGTTTGGCACGTTGCTAATAACAGCCAGCCTACTGCTAAAATATCAATGACAGAACAGAAGAAATAGATATTTAGGAAAACATAAATCAAAGCTGAGGAAGTAGGCAAAAAAAAAGCACTGATAGAAAGCAAATAAAGAAAGATCTATAATATTGGGACAGGCAGCATCTCCCTGCTCACATGGTAATTTTCTTTAGCCAGTAACCAACGAGGATGCCTGCCATGGGAAGAAGGTGTGATTTTGTGATTTAATGATCCAAAGCCCATTTTTAGACACCACTTAGCCATAAAGAGAGGCCCAAGTTTCTGTGGTCCAGGAGTCATTGAGATAAGTATTTATGACAAGGTCCACCCAAACACAAGGGGACACAAGAAGGGGGCATGTCAGGCACAGGGAATTTTCACAGTGGCTTACAAAGGCAAGTCTTACTCTTACCTAACACAGTAGTTCTCCACACTGGCTGCATGTTAGATCCCCACAGAAGAGCTTTTAAAATCCCCAATCCAATATTCTTGGAATTGGGGGGCAGGAGAGAGTAGGAGACCCAGTCATTAGAGGTTTTTAAAGCTCCCCAGTTAAATATTTAACTCCCATTTGAAGAGGGGCTAATAAGCTGAGATTAAGAAATACTGACCTAAAACAACATGACGTAGACAGGCAAATCATTTGTGGAACTCAGGCCAGTTAATTGGTCATCTCCCTGAAATAATTCAAATTGGAGAAAATTCTGTACAAATGTAGTAATAGTGATGTTTTATATGTGTATAGTATTTTAAATTTTAAGGTGTTTTTATGTTCATGTCAGGGTGCTCTCAGGAAAATGCTTAGCATCTTGTAAAACTGCAAATGTTAGATATCATCAACCCAGTGTTATAATTGAGAAAACAAGCAGAGTGCAAGTCTAGGACTTATTTGGAGTCTCACCAAAGAAGTGGCTGGCAAAGCCTAAAATTGGGGCACTGGACACTTTCCTATATTCTTCTATCCTGGGAATCATGATTTCCTTTGAAGAATGCTGTAAAATGTTGAGTGTATTTGTTTTTGTCTGTTATGAACTGTGATTGGCCTCACACATAAATAATGAATTCTTTTAGGTTGCTTTAGGAATGTGTTACTTTAGTATCTCAAATCAATAATACAATCACAAGTGAAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG036098]] | + | [[Category:Intergenic]][[Category:NONHSAG036098]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:41, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092146 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2184 nt |
Genomic location |
chr3-:131173972..131176155 |
Exon number |
1 |
Exons |
131173972..131176155 |
Genome context |
|
Sequence |
000001 TTATAATCAT GTGTTACTTC ATGGCTACCT GTTTTCTCTA TGGGAAGAAG TTCTTCACAT GAGAGTTTAT TTTAGTAGTG 000080
000081 ATAGATAAAG CTTCTACTCT CTTCAGGGAC TTTTCTTAAA GTTGACTTTA CTATAACAAC AGACAGTTCT TCAGTTTTCA 000160 000161 GTTTTATTGC TATTTCTGCT AGAACACCTC ATCCACCAGC TTGGCCCCAT AAATGATAGT GGTCTCTCAA AGCATGTCCC 000240 000241 ACCAGACAAA TGAAGACTGT CATTCAGACT TTGCCTCCAG CAATTACCTA GGATTCCCTG GAATAAGAGG ACTCAGTGTC 000320 000321 ATTATCCCCT CCAGAAAACA GCCAGTCCTG AGCATGCAGG GTTGCCAGCC TCAATTTCAT CGTTTGCTTT TCTGCTTTTA 000400 000401 AATGTTTGCA AACAATAGCA GTCCATGTCA CATGTTTTAT TCTTTTTAGA TTAATGAGGT GGCCTGTTCA AGTTAGACAG 000480 000481 GCCATATTAA TTTCAGCGAA TGCGGTCCTT AGCACCACAA AAGCAAACAA ATGATTTTAA CTCAACTGGA CAAAGAGTCT 000560 000561 TGGCATAGTA GGTGCGTAAT TGTTGGTTTT TGGATTTGAC TGGAGAGTGA GAGTTGTGAT TTTGATTCTC CAAAAGCAGA 000640 000641 CTATATGAGC ACCAAGTATA TTTTAGGTCA TTTAGAAAGT TTGTTGTTTG AACAAATGAG GATAAGACAT CCATCAGTTT 000720 000721 TTGACACTGC ACCAAATCTG CTTGATTTCA AAAGGAACTA ACTAAACACT CCATCACAAG AGTCCTGACA AAGATGCACG 000800 000801 GATGGCTATA TTAACGAGAC TGTGTCAAAA TGAATAATAA TAAATGGCTG TCTTGAGAAT CCAACGTAAA TTTCCTTATC 000880 000881 TAAAATAGTG GTTTGTTTAA ATGATGAAGC AAAGATGGCA TTGGAGCTGT TGGCTGACTG TCCCTTTTTT TCTGCTAACT 000960 000961 GCAGAAGCAC GGAATCTGAT GCCCTACTTT GTGGGGTAAT GGTGTGCTTA TCTCCCCCTC CTCAAACAGA GTTTGGCACG 001040 001041 TTGCTAATAA CAGCCAGCCT ACTGCTAAAA TATCAATGAC AGAACAGAAG AAATAGATAT TTAGGAAAAC ATAAATCAAA 001120 001121 GCTGAGGAAG TAGGCAAAAA AAAAGCACTG ATAGAAAGCA AATAAAGAAA GATCTATAAT ATTGGGACAG GCAGCATCTC 001200 001201 CCTGCTCACA TGGTAATTTT CTTTAGCCAG TAACCAACGA GGATGCCTGC CATGGGAAGA AGGTGTGATT TTGTGATTTA 001280 001281 ATGATCCAAA GCCCATTTTT AGACACCACT TAGCCATAAA GAGAGGCCCA AGTTTCTGTG GTCCAGGAGT CATTGAGATA 001360 001361 AGTATTTATG ACAAGGTCCA CCCAAACACA AGGGGACACA AGAAGGGGGC ATGTCAGGCA CAGGGAATTT TCACAGTGGC 001440 001441 TTACAAAGGC AAGTCTTACT CTTACCTAAC ACAGTAGTTC TCCACACTGG CTGCATGTTA GATCCCCACA GAAGAGCTTT 001520 001521 TAAAATCCCC AATCCAATAT TCTTGGAATT GGGGGGCAGG AGAGAGTAGG AGACCCAGTC ATTAGAGGTT TTTAAAGCTC 001600 001601 CCCAGTTAAA TATTTAACTC CCATTTGAAG AGGGGCTAAT AAGCTGAGAT TAAGAAATAC TGACCTAAAA CAACATGACG 001680 001681 TAGACAGGCA AATCATTTGT GGAACTCAGG CCAGTTAATT GGTCATCTCC CTGAAATAAT TCAAATTGGA GAAAATTCTG 001760 001761 TACAAATGTA GTAATAGTGA TGTTTTATAT GTGTATAGTA TTTTAAATTT TAAGGTGTTT TTATGTTCAT GTCAGGGTGC 001840 001841 TCTCAGGAAA ATGCTTAGCA TCTTGTAAAA CTGCAAATGT TAGATATCAT CAACCCAGTG TTATAATTGA GAAAACAAGC 001920 001921 AGAGTGCAAG TCTAGGACTT ATTTGGAGTC TCACCAAAGA AGTGGCTGGC AAAGCCTAAA ATTGGGGCAC TGGACACTTT 002000 002001 CCTATATTCT TCTATCCTGG GAATCATGAT TTCCTTTGAA GAATGCTGTA AAATGTTGAG TGTATTTGTT TTTGTCTGTT 002080 002081 ATGAACTGTG ATTGGCCTCA CACATAAATA ATGAATTCTT TTAGGTTGCT TTAGGAATGT GTTACTTTAG TATCTCAAAT 002160 002161 CAATAATACA ATCACAAGTG AAAC |
Predicted Small Protein
Name | NONHSAT092146_smProtein_212:400 |
Length | 63 |
Molecular weight | 6971.9766 |
Aromaticity | 0.0967741935484 |
Instability index | 52.2870967742 |
Isoelectric point | 7.78936767578 |
Runs | 10 |
Runs residual | 0.00764976958525 |
Runs probability | 0.0345521992581 |
Amino acid sequence | MIVVSQSMSHQTNEDCHSDFASSNYLGFPGIRGLSVIIPSRKQPVLSMQGCQPQFHRLLF CF |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLLEELLLLLLHHHEEEEE EL |
PRMN | - |
PiMo | - |