Difference between revisions of "NONHSAT040060"
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sequence = <dnaseq>GATAATCACTTTAAGATGGATGATGATGAAAATGAGCACTAGCTATCTTTAAGAATGATCGTAGGGGCAAAGGATGAATTGTGCATTGTTGAAGCAGAGGCAATGAATGATGAAGGTAGTCCGATTACGGTAACACTGATGGCTTTGAAAACATCTGTACAGCCAAGGGCTTCCCTTGGGCTATGAAATACCACCACCTGTGGCGTTGTGGGTGAAGTGTGGTTCAGGGCCCGTGTGTATCAATGGATGGCACTTAGTAGCTGGGGAGGAAGATGCAGAGTCAGAGACAGGAGGATGTGAAACTCTTCAGAATATCTGGAAAGCGATCTCCCCCTGGAGGTGGCAGCAAGGTTCCACAGAAAAAAGTAAAATTTGCTGTTGCTGAAGATGATGATGATGATGATAAGGAAACTGAAGACAAATCTCCAGTGAAGAAATCTATACGAGATACTCTACCCAATCATGCACAACAATCAAACCAGAATGGAAAAGACTCCAAGTCACCAATGTCAAGAAAAGGTCAGGAATCCTTCAAAAAATAGGAAAATACTCCTAAAACACCAGAAGAACCTAGTTCTGCAGAAGACATTAAAGCAAACATGCAGCCAAGTATAGCAAAAGGTGGTTCTCTTTTCAGAGTGGAAGCCAAGAAAATCAATTATGTGAATGGCTTCTGGATGACTGACTAGGGGGCTATTCAAGATCTCTGGCAGGGCAGGAAGTCTCTTT</dnaseq>| | sequence = <dnaseq>GATAATCACTTTAAGATGGATGATGATGAAAATGAGCACTAGCTATCTTTAAGAATGATCGTAGGGGCAAAGGATGAATTGTGCATTGTTGAAGCAGAGGCAATGAATGATGAAGGTAGTCCGATTACGGTAACACTGATGGCTTTGAAAACATCTGTACAGCCAAGGGCTTCCCTTGGGCTATGAAATACCACCACCTGTGGCGTTGTGGGTGAAGTGTGGTTCAGGGCCCGTGTGTATCAATGGATGGCACTTAGTAGCTGGGGAGGAAGATGCAGAGTCAGAGACAGGAGGATGTGAAACTCTTCAGAATATCTGGAAAGCGATCTCCCCCTGGAGGTGGCAGCAAGGTTCCACAGAAAAAAGTAAAATTTGCTGTTGCTGAAGATGATGATGATGATGATAAGGAAACTGAAGACAAATCTCCAGTGAAGAAATCTATACGAGATACTCTACCCAATCATGCACAACAATCAAACCAGAATGGAAAAGACTCCAAGTCACCAATGTCAAGAAAAGGTCAGGAATCCTTCAAAAAATAGGAAAATACTCCTAAAACACCAGAAGAACCTAGTTCTGCAGAAGACATTAAAGCAAACATGCAGCCAAGTATAGCAAAAGGTGGTTCTCTTTTCAGAGTGGAAGCCAAGAAAATCAATTATGTGAATGGCTTCTGGATGACTGACTAGGGGGCTATTCAAGATCTCTGGCAGGGCAGGAAGTCTCTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG015963]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG015963]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:47, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT040060 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
729 nt |
| Genomic location |
chr14-:102309731..102310459 |
| Exon number |
1 |
| Exons |
102309731..102310459 |
| Genome context |
|
| Sequence |
000001 GATAATCACT TTAAGATGGA TGATGATGAA AATGAGCACT AGCTATCTTT AAGAATGATC GTAGGGGCAA AGGATGAATT 000080
000081 GTGCATTGTT GAAGCAGAGG CAATGAATGA TGAAGGTAGT CCGATTACGG TAACACTGAT GGCTTTGAAA ACATCTGTAC 000160 000161 AGCCAAGGGC TTCCCTTGGG CTATGAAATA CCACCACCTG TGGCGTTGTG GGTGAAGTGT GGTTCAGGGC CCGTGTGTAT 000240 000241 CAATGGATGG CACTTAGTAG CTGGGGAGGA AGATGCAGAG TCAGAGACAG GAGGATGTGA AACTCTTCAG AATATCTGGA 000320 000321 AAGCGATCTC CCCCTGGAGG TGGCAGCAAG GTTCCACAGA AAAAAGTAAA ATTTGCTGTT GCTGAAGATG ATGATGATGA 000400 000401 TGATAAGGAA ACTGAAGACA AATCTCCAGT GAAGAAATCT ATACGAGATA CTCTACCCAA TCATGCACAA CAATCAAACC 000480 000481 AGAATGGAAA AGACTCCAAG TCACCAATGT CAAGAAAAGG TCAGGAATCC TTCAAAAAAT AGGAAAATAC TCCTAAAACA 000560 000561 CCAGAAGAAC CTAGTTCTGC AGAAGACATT AAAGCAAACA TGCAGCCAAG TATAGCAAAA GGTGGTTCTC TTTTCAGAGT 000640 000641 GGAAGCCAAG AAAATCAATT ATGTGAATGG CTTCTGGATG ACTGACTAGG GGGCTATTCA AGATCTCTGG CAGGGCAGGA 000720 000721 AGTCTCTTT |
Predicted Small Protein
| Name | NONHSAT040060_smProtein_272:541 |
| Length | 90 |
| Molecular weight | 9972.9426 |
| Aromaticity | 0.0337078651685 |
| Instability index | 71.4617977528 |
| Isoelectric point | 9.55841064453 |
| Runs | 9 |
| Runs residual | 0.0420797532496 |
| Runs probability | 0.0446426818975 |
| Amino acid sequence | MQSQRQEDVKLFRISGKRSPPGGGSKVPQKKVKFAVAEDDDDDDKETEDKSPVKKSIRDT LPNHAQQSNQNGKDSKSPMSRKGQESFKK |
| Secondary structure | LLLLLLLEEEEEEEELLLLLLLLLLLLLLLEEEEEEEELLLLLLLLLLLLLLLLLHHHHL LLLHHHHLLLLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
