Difference between revisions of "NONHSAT040920"

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Please input one-sentence summary here.
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''PWRN1'', Prader-Willi region non-protein coding RNA 1 of 1451 bp, which was located between NDN and C15orf2, may play a role in PWS (Prader–Willi/Angelman syndrome) with C15orf2.
  
 
==Annotated Information==
 
==Annotated Information==
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===Transcriptomic Nomeclature===
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===Name===
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Please input transcriptomic nomeclature information here.
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''PWRN1'':Prader-Willi region non-protein coding RNA 1(HGNC nomenclature)
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''NCRNA00198'', "non-protein coding RNA 198"<ref name="ref1" />
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===Characteristics===
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[[File:phisical maps.png|right|thumb|400px|'''phisical maps'''<ref name="ref1" />]]
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PWRN1,a 1451 bp Prader-Willi region non-protein coding RNA 1,located between NDN and C15orf2 in 15q11.2<ref name="ref1" />.
  
 
===Function===
 
===Function===
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Please input function information here.
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PWRN1 may functions with C15orf2 in PWS (Prader–Willi/Angelman syndrome)<ref name="ref1" />.
  
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===Regulation===
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===Disease===
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Prader-Willi syndrome
  
 
===Expression===
 
===Expression===
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[[File:Tissue-specific expression analysis of PWRN1 detected by reamplification of RT-PCR products for exons 23-26.jpg|right|thumb|400px|'''Tissue-specific expression analysis of PWRN1 detected by reamplification of RT-PCR products for exons 23-26'''<ref name="ref1" />]]
  
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===Allelic Information and Variation===
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The expression of PWRN1 is most abundant in testis, but also present at low levels in several other tissues, including fetal brain<ref name="ref1" />.  
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Please input allelic information and variation information here.
 
  
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===Evolution===
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RT-PCR primer pairs used for PWRN1 were as follows,
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{|class='wikitable' style="text-align:center"
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|-
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! | Primer
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! | Sequences
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|-
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| | PWRN2-AK058147-F2
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| | 5'-AACACGGAGATGCATTGACA-3'<ref name="ref1" />
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|-
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| | Ex26R
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| | 5'-ACCTGGGCAACAATTGACTC-3'<ref name="ref1" />
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|-
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| | PWRN1-Exon19-F
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| | 5'-GCAACATTCGAAACCCAGGTGCT-3'<ref name="ref1" />
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|-
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| | Ex26R
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| | 5'-ACCTGGGCAACAATTGACTC-3'<ref name="ref1" />
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|-
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| | AK058147-F2
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| | 5'-AACACGGAGATGCATTGACA-3'<ref name="ref1" />
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|-
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| | AL704599-R2
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| | 5'-TCTGTTTCCCAAGCTGGAGT-3'<ref name="ref1" />
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|-
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| | PWRN1-Exon2-F
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| | 5'-GATTCCCCAGCTGATCCTCG-3'<ref name="ref1" />
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|-
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| | PWRN1-Exon8-R
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| | 5'-AGAAGGGTGTCAATGCATCACCG-3'<ref name="ref1" />
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|-
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| | Ex23F
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| | 5'-GCCTCCTTTATTGAGAAATGTTTT-3'<ref name="ref1" />
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|-
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| | Ex26R
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| | 5'-ACCTGGGCAACAATTGACTC-3'<ref name="ref1" />
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|}
  
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You can also add sub-section(s) at will.
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===Allelic Information and Variation===
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PWRN1 is biallelically expressed in testis and kidney, but monoallelically in fetal brain<ref name="ref1" />.
  
 
==Labs working on this lncRNA==
 
==Labs working on this lncRNA==
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* Institut für Humangenetik, Universitätsklinikum Essen, Hufelandstrasse 55, 45122 Essen, Germany.<ref name="ref1" />
  
 
==References==
 
==References==
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<references>
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<ref name="ref1">Buiting K, Nazlican H, Galetzka D, Wawrzik M, Gross S, Horsthemke B. C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain[J]. Genomics. 2007,89(5):588-95.</ref>(1)
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</references>
  
 
{{basic|
 
{{basic|
 
tID = NONHSAT040920|
 
tID = NONHSAT040920|
 
source = NONCODE4.0|
 
source = NONCODE4.0|
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same = ,|
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same = ''PWRN1'', ''NCRNA00198''|
 
classification = intergenic|
 
classification = intergenic|
 
length = 1451 nt|
 
length = 1451 nt|
Line 42: Line 85:
 
sequence = <dnaseq>AGAACAGGCAGAGGCAGTTCAGGGGTATTCTGGTTGCCTTACCCAGCTCTGAAGTCTGTCAGCCTCTTCAGATGTCACTTGCCATGTGGTAAGGAAGTGTAGTCAGCAGCTGGTGCAGTGGGAAGAAGAGAAAGGAAGTTCCCCAAGACAAAAACATCTCGGCAGACCGTGATCATGGGCTACATTCTCCGTACCAGCTTCATAGCTCCAGTGAGAAAATAAATTCCTGCATCCAGGAGATGTGGAGTAAGAGATACAGCTGCCCTTGACCATATTTCTTACTTCCGAGAAGATCGTAGCAGTAATTCAGTCTTCAGGGAACACCAAGGCCTGTTTGATTTTCCAAGTATCAACAAGTGGAGTTGACAAGAGTGACAAGTGGTCAGAGCAAAGCATTTCATGATGACTGTAACGTGCCTGTGTCAGCAGCGACTGCTTACAGTGAGATTCACATGACCATCGTTTATGACATAGGAAGAATAAAAGGAGAGAGAGAGAGAAAGATAGGTAGTTGATCAAAATGAAGAATTGGATTTGGAAAGCAACTTCGAATAGTCTCTGCTTATATTTCTGAGATTAAGGCAAACAGTCTCAAGAATCTCATCCAGGATACCTCATCACAGGCTGGAGTGCAGTGTCATGAGCTTGGCTCACTACAGCCTCCATCTTCTGTGCTTAAGGATCCTTCCCTCTCAACCTCCAAGGTAGCTGAGACTACAGGCAACATTCGAAACCCAGGTGCCACTCCTTCAGGAAGGTACCATCAAGCTCCAAGGACTCATCCTCTTTCTCCTTCCCCACTACCTAGTCATTAGAGCGTCAGCATCCACTTCCTGAAAGGAAGATGCCTGTTTTTCACATATCCCAGAAAGCCTCATTTTAGGACAGCATTTAGCAGAGTGTATTCAGGATCCCACTAACCTTTTCGGAAGACATGACTTCCAGATGATATAAGGCAAGAATAAGAAATTTCAGTGACAGGGAACAGAAATCATATTTCTGCATTCAGGATCATGTTTTCTTGGCTCCATCAGGAACTGTGCAGGACTGTGCACTCTGTTGATACTCACATGGTGGAATTATATTGCCCTTGGCCAACCCTAAAGCCATCAAGATAGCAGCAACTACTCTATCATTACTGTACCACCACCTGTATGGATCTCGTTGCCCATATGAAACTGAGTAAGGAACAATGTGCATCACACTCACAGAGAAAGATGGACAAGTTTGGAATAATTCACTGTCGAAGTCTTCTTGAGCTGAGCAGTCATGTGAGCTTGGAAGATGATCCCTCTCCAGCTGATCCTTCAGCTCAGGCCATCATCTACATCTGGATTCCTGACCCGGAGAAACTATGAGTAATGTGTGCTGCTTTTGAGCCACTAAGCTACATGGTAATAGGCTATGCTTCAATAAACAATAATACACTTGATGATAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>AGAACAGGCAGAGGCAGTTCAGGGGTATTCTGGTTGCCTTACCCAGCTCTGAAGTCTGTCAGCCTCTTCAGATGTCACTTGCCATGTGGTAAGGAAGTGTAGTCAGCAGCTGGTGCAGTGGGAAGAAGAGAAAGGAAGTTCCCCAAGACAAAAACATCTCGGCAGACCGTGATCATGGGCTACATTCTCCGTACCAGCTTCATAGCTCCAGTGAGAAAATAAATTCCTGCATCCAGGAGATGTGGAGTAAGAGATACAGCTGCCCTTGACCATATTTCTTACTTCCGAGAAGATCGTAGCAGTAATTCAGTCTTCAGGGAACACCAAGGCCTGTTTGATTTTCCAAGTATCAACAAGTGGAGTTGACAAGAGTGACAAGTGGTCAGAGCAAAGCATTTCATGATGACTGTAACGTGCCTGTGTCAGCAGCGACTGCTTACAGTGAGATTCACATGACCATCGTTTATGACATAGGAAGAATAAAAGGAGAGAGAGAGAGAAAGATAGGTAGTTGATCAAAATGAAGAATTGGATTTGGAAAGCAACTTCGAATAGTCTCTGCTTATATTTCTGAGATTAAGGCAAACAGTCTCAAGAATCTCATCCAGGATACCTCATCACAGGCTGGAGTGCAGTGTCATGAGCTTGGCTCACTACAGCCTCCATCTTCTGTGCTTAAGGATCCTTCCCTCTCAACCTCCAAGGTAGCTGAGACTACAGGCAACATTCGAAACCCAGGTGCCACTCCTTCAGGAAGGTACCATCAAGCTCCAAGGACTCATCCTCTTTCTCCTTCCCCACTACCTAGTCATTAGAGCGTCAGCATCCACTTCCTGAAAGGAAGATGCCTGTTTTTCACATATCCCAGAAAGCCTCATTTTAGGACAGCATTTAGCAGAGTGTATTCAGGATCCCACTAACCTTTTCGGAAGACATGACTTCCAGATGATATAAGGCAAGAATAAGAAATTTCAGTGACAGGGAACAGAAATCATATTTCTGCATTCAGGATCATGTTTTCTTGGCTCCATCAGGAACTGTGCAGGACTGTGCACTCTGTTGATACTCACATGGTGGAATTATATTGCCCTTGGCCAACCCTAAAGCCATCAAGATAGCAGCAACTACTCTATCATTACTGTACCACCACCTGTATGGATCTCGTTGCCCATATGAAACTGAGTAAGGAACAATGTGCATCACACTCACAGAGAAAGATGGACAAGTTTGGAATAATTCACTGTCGAAGTCTTCTTGAGCTGAGCAGTCATGTGAGCTTGGAAGATGATCCCTCTCCAGCTGATCCTTCAGCTCAGGCCATCATCTACATCTGGATTCCTGACCCGGAGAAACTATGAGTAATGTGTGCTGCTTTTGAGCCACTAAGCTACATGGTAATAGGCTATGCTTCAATAAACAATAATACACTTGATGATAAAAAAAAAAAAAAA</dnaseq>|
 
}}
 
}}
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[[Category:Intergenic]][[Category:NONHSAG016297]]
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[[Category:Intergenic]][[Category:NONHSAG016297]][[Category:Transcripts]]

Latest revision as of 14:00, 1 July 2016

PWRN1, Prader-Willi region non-protein coding RNA 1 of 1451 bp, which was located between NDN and C15orf2, may play a role in PWS (Prader–Willi/Angelman syndrome) with C15orf2.

Annotated Information

Name

PWRN1:Prader-Willi region non-protein coding RNA 1(HGNC nomenclature)

NCRNA00198, "non-protein coding RNA 198"[1]

Characteristics

phisical maps[1]

PWRN1,a 1451 bp Prader-Willi region non-protein coding RNA 1,located between NDN and C15orf2 in 15q11.2[1].

Function

PWRN1 may functions with C15orf2 in PWS (Prader–Willi/Angelman syndrome)[1].

Disease

Prader-Willi syndrome

Expression

Tissue-specific expression analysis of PWRN1 detected by reamplification of RT-PCR products for exons 23-26[1]

The expression of PWRN1 is most abundant in testis, but also present at low levels in several other tissues, including fetal brain[1].

RT-PCR primer pairs used for PWRN1 were as follows,

Primer Sequences
PWRN2-AK058147-F2 5'-AACACGGAGATGCATTGACA-3'[1]
Ex26R 5'-ACCTGGGCAACAATTGACTC-3'[1]
PWRN1-Exon19-F 5'-GCAACATTCGAAACCCAGGTGCT-3'[1]
Ex26R 5'-ACCTGGGCAACAATTGACTC-3'[1]
AK058147-F2 5'-AACACGGAGATGCATTGACA-3'[1]
AL704599-R2 5'-TCTGTTTCCCAAGCTGGAGT-3'[1]
PWRN1-Exon2-F 5'-GATTCCCCAGCTGATCCTCG-3'[1]
PWRN1-Exon8-R 5'-AGAAGGGTGTCAATGCATCACCG-3'[1]
Ex23F 5'-GCCTCCTTTATTGAGAAATGTTTT-3'[1]
Ex26R 5'-ACCTGGGCAACAATTGACTC-3'[1]

Allelic Information and Variation

PWRN1 is biallelically expressed in testis and kidney, but monoallelically in fetal brain[1].

Labs working on this lncRNA

  • Institut für Humangenetik, Universitätsklinikum Essen, Hufelandstrasse 55, 45122 Essen, Germany.[1]

References

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 Buiting K, Nazlican H, Galetzka D, Wawrzik M, Gross S, Horsthemke B. C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain[J]. Genomics. 2007,89(5):588-95.

Basic Information

Transcript ID

NONHSAT040920

Source

NONCODE4.0

Same with

PWRN1, NCRNA00198

Classification

intergenic

Length

1451 nt

Genomic location

chr15+:24803299..24832926

Exon number

9

Exons

24803299..24803468,24811803..24811947,24813044..24813329,24814930..24814956,24815179..24815275,24819657..24819960,24820054..24820150,24825374..24825477,24832714..24832926

Genome context

Sequence
000001 AGAACAGGCA GAGGCAGTTC AGGGGTATTC TGGTTGCCTT ACCCAGCTCT GAAGTCTGTC AGCCTCTTCA GATGTCACTT 000080
000081 GCCATGTGGT AAGGAAGTGT AGTCAGCAGC TGGTGCAGTG GGAAGAAGAG AAAGGAAGTT CCCCAAGACA AAAACATCTC 000160
000161 GGCAGACCGT GATCATGGGC TACATTCTCC GTACCAGCTT CATAGCTCCA GTGAGAAAAT AAATTCCTGC ATCCAGGAGA 000240
000241 TGTGGAGTAA GAGATACAGC TGCCCTTGAC CATATTTCTT ACTTCCGAGA AGATCGTAGC AGTAATTCAG TCTTCAGGGA 000320
000321 ACACCAAGGC CTGTTTGATT TTCCAAGTAT CAACAAGTGG AGTTGACAAG AGTGACAAGT GGTCAGAGCA AAGCATTTCA 000400
000401 TGATGACTGT AACGTGCCTG TGTCAGCAGC GACTGCTTAC AGTGAGATTC ACATGACCAT CGTTTATGAC ATAGGAAGAA 000480
000481 TAAAAGGAGA GAGAGAGAGA AAGATAGGTA GTTGATCAAA ATGAAGAATT GGATTTGGAA AGCAACTTCG AATAGTCTCT 000560
000561 GCTTATATTT CTGAGATTAA GGCAAACAGT CTCAAGAATC TCATCCAGGA TACCTCATCA CAGGCTGGAG TGCAGTGTCA 000640
000641 TGAGCTTGGC TCACTACAGC CTCCATCTTC TGTGCTTAAG GATCCTTCCC TCTCAACCTC CAAGGTAGCT GAGACTACAG 000720
000721 GCAACATTCG AAACCCAGGT GCCACTCCTT CAGGAAGGTA CCATCAAGCT CCAAGGACTC ATCCTCTTTC TCCTTCCCCA 000800
000801 CTACCTAGTC ATTAGAGCGT CAGCATCCAC TTCCTGAAAG GAAGATGCCT GTTTTTCACA TATCCCAGAA AGCCTCATTT 000880
000881 TAGGACAGCA TTTAGCAGAG TGTATTCAGG ATCCCACTAA CCTTTTCGGA AGACATGACT TCCAGATGAT ATAAGGCAAG 000960
000961 AATAAGAAAT TTCAGTGACA GGGAACAGAA ATCATATTTC TGCATTCAGG ATCATGTTTT CTTGGCTCCA TCAGGAACTG 001040
001041 TGCAGGACTG TGCACTCTGT TGATACTCAC ATGGTGGAAT TATATTGCCC TTGGCCAACC CTAAAGCCAT CAAGATAGCA 001120
001121 GCAACTACTC TATCATTACT GTACCACCAC CTGTATGGAT CTCGTTGCCC ATATGAAACT GAGTAAGGAA CAATGTGCAT 001200
001201 CACACTCACA GAGAAAGATG GACAAGTTTG GAATAATTCA CTGTCGAAGT CTTCTTGAGC TGAGCAGTCA TGTGAGCTTG 001280
001281 GAAGATGATC CCTCTCCAGC TGATCCTTCA GCTCAGGC