Difference between revisions of "NONHSAT071042"

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sequence = <dnaseq>GGGCCTTACCCCGCCAGGCGCCGGAGTCCACGCTCCACCGCCGCTGAGGGGCGTTCGGGCGCCACCGAGCAGCCCAAATTGAAACCCCGAGAGGCTCGGGACTAAAGCTGAAGGGGCAGGTAGAGGGGCCGCCCGGCGGTCCCAGACCATCCTAGCAAATCTGGGGCGAGGGAAGGGTTGTCAGTTGGCCGATTGGGAGCGGCTTCGGGAGCGAAGGAGCTGCTTTTCGGCGAGGCCCCTCGGGAGTGAAGGTTCCTCGAATCAAGCGTAAACTGGGGCCCCCTCTGGGATGGTGTAAACTTATTCAGCTTCAAATGCAGCCCAGTATCCTGCCCTAAGTTCCAGAGGACCATTTTCCACATGAAAAGTCTTACGGATAGACAAACTTCCATTCAAGCCAATGTCAAGTTTTCATTGCAAGAAAGTAGCAGCCGTGTTTAAGGGCTTGTTTCTGGCTATGTTAAAGGACCATCCTCTGAGGAAAGCAGAGGAGAGGAACTCCATTATCCTTACAGTGAAACGCAACCACTGCAGAAAAACTCCACTGAGTTCGCTCCAAATGCTCATCTTCTTCTTCGGCCCTGGATGTCAGACAAACAGGACAAACAGGAAACAAAATTATTTTTCTTCGTGGAGGGCAGAGCAGCACTCCCCCGTCGCCCAGTATTTGGATCCCCAGCGGGAATGGGGAGCACCAGGCCAGTGGGAGGCTGCCCCGGCCCTCCCGCGACCTCTGGATTGAACTTTCCGCACACTTCTCGGCCCCTCGGCAGGTGGCCCAGCCTCGACCCGACCCCACTGCCCACTCACTGCTTCTCCTGCGCGTCCAGGTCCCTGACGAGCGCATCGCGCTTGTTCACCAGGGCCACCAGCTCATCTAGCAGAAGCTGTTCGCGTCGCTTCTGGGCCTCGGTCTTCTGCCAGTCTGCAGAAGACGGGAGGCTAGTTACCCACCGGCAGGGCCTCCGAACACCCGGCCCCCCGCCCTCCCCTTCCCGCCTTTTCCAGTTTCCTTATATTTCTCAGCAAACCACATTATAGAGCCACTAGCTAGTGTTTTCTGGGGAGTTTGGCTGTTGTGGTGAAGGCTTCCTCGCTAAAAGTCTACTTCCTAAACAGGTCCTGTGAATGGAGATGGCTGCAGCAGTGTTGGAACCTGCTTAGAACCAGGTGTGAACTGGTGGCTAGCCTGAGGTGCGCACCTGAATCCAGCCAAAGTGGGGGAGGGGAGCTAGAGGCCCAGAAGAGGTTGGCCCAGGGGTTGGTAGTGGGGGAAGTGGGTAAATGAGGAGGCGGGAAACAGTGATGGGCGATAAAATCATTCTGAAAAGGCTAGAGAATCTGCCTGAGAACCTATCCTCCTCCCCCACCCCCACTCTCACCCCAAACAGCCCATTCTTCGCTAATTTCCTCTTCGCTCTATTTTAGCAGTTGGATGTATCTCACACTGGGCGCCATATGCTTCACAATAACTTTAAAAGTAGTGAATCGGCTAATTAGCATTTTTCTTTGAAGTAAAAAATAAATTTGCTCTGCAATATTACACTGCAGCTCTCGATCGCATCACAGCCAGTTTTCTTTTGGAGACGTTTGCTGGGTGGTTTCAAATCAAAGCACTTTTGCAAAGGAAAAATTACATATTTCTTTCTGAAACCCTATGTTAAAGGTTGGAAAACCCGATGGGCAGTGCTCTTTCCATGGATGGGGGGCGTTTTTTTTTTTTTTTTTTGAAGGTTTTAGACCCCAATAATATATTTCCTAATCTTTGCTGGTCTGATGATTTCCTTAAGATGAGCAGCAGTTTCATTTAATAGAAACAGGACCAAATCGAACATTTAAAACACTTTTGAAACCAAAGCCAACTGCTCTCTGGCCAGACTGTAAGGGCTTGTAGCTGTCAATCAACCCCCAGTCTACCCCGCCTCCCTCATTAGGAAGGTAAACAATGAAAAGAAGAAGTAGATGATGAGGCAGATAGCAGAACAAATGAGGACCTAGAGGGAAACAGGACACCAGCTTAAAAAAA</dnaseq>|
 
sequence = <dnaseq>GGGCCTTACCCCGCCAGGCGCCGGAGTCCACGCTCCACCGCCGCTGAGGGGCGTTCGGGCGCCACCGAGCAGCCCAAATTGAAACCCCGAGAGGCTCGGGACTAAAGCTGAAGGGGCAGGTAGAGGGGCCGCCCGGCGGTCCCAGACCATCCTAGCAAATCTGGGGCGAGGGAAGGGTTGTCAGTTGGCCGATTGGGAGCGGCTTCGGGAGCGAAGGAGCTGCTTTTCGGCGAGGCCCCTCGGGAGTGAAGGTTCCTCGAATCAAGCGTAAACTGGGGCCCCCTCTGGGATGGTGTAAACTTATTCAGCTTCAAATGCAGCCCAGTATCCTGCCCTAAGTTCCAGAGGACCATTTTCCACATGAAAAGTCTTACGGATAGACAAACTTCCATTCAAGCCAATGTCAAGTTTTCATTGCAAGAAAGTAGCAGCCGTGTTTAAGGGCTTGTTTCTGGCTATGTTAAAGGACCATCCTCTGAGGAAAGCAGAGGAGAGGAACTCCATTATCCTTACAGTGAAACGCAACCACTGCAGAAAAACTCCACTGAGTTCGCTCCAAATGCTCATCTTCTTCTTCGGCCCTGGATGTCAGACAAACAGGACAAACAGGAAACAAAATTATTTTTCTTCGTGGAGGGCAGAGCAGCACTCCCCCGTCGCCCAGTATTTGGATCCCCAGCGGGAATGGGGAGCACCAGGCCAGTGGGAGGCTGCCCCGGCCCTCCCGCGACCTCTGGATTGAACTTTCCGCACACTTCTCGGCCCCTCGGCAGGTGGCCCAGCCTCGACCCGACCCCACTGCCCACTCACTGCTTCTCCTGCGCGTCCAGGTCCCTGACGAGCGCATCGCGCTTGTTCACCAGGGCCACCAGCTCATCTAGCAGAAGCTGTTCGCGTCGCTTCTGGGCCTCGGTCTTCTGCCAGTCTGCAGAAGACGGGAGGCTAGTTACCCACCGGCAGGGCCTCCGAACACCCGGCCCCCCGCCCTCCCCTTCCCGCCTTTTCCAGTTTCCTTATATTTCTCAGCAAACCACATTATAGAGCCACTAGCTAGTGTTTTCTGGGGAGTTTGGCTGTTGTGGTGAAGGCTTCCTCGCTAAAAGTCTACTTCCTAAACAGGTCCTGTGAATGGAGATGGCTGCAGCAGTGTTGGAACCTGCTTAGAACCAGGTGTGAACTGGTGGCTAGCCTGAGGTGCGCACCTGAATCCAGCCAAAGTGGGGGAGGGGAGCTAGAGGCCCAGAAGAGGTTGGCCCAGGGGTTGGTAGTGGGGGAAGTGGGTAAATGAGGAGGCGGGAAACAGTGATGGGCGATAAAATCATTCTGAAAAGGCTAGAGAATCTGCCTGAGAACCTATCCTCCTCCCCCACCCCCACTCTCACCCCAAACAGCCCATTCTTCGCTAATTTCCTCTTCGCTCTATTTTAGCAGTTGGATGTATCTCACACTGGGCGCCATATGCTTCACAATAACTTTAAAAGTAGTGAATCGGCTAATTAGCATTTTTCTTTGAAGTAAAAAATAAATTTGCTCTGCAATATTACACTGCAGCTCTCGATCGCATCACAGCCAGTTTTCTTTTGGAGACGTTTGCTGGGTGGTTTCAAATCAAAGCACTTTTGCAAAGGAAAAATTACATATTTCTTTCTGAAACCCTATGTTAAAGGTTGGAAAACCCGATGGGCAGTGCTCTTTCCATGGATGGGGGGCGTTTTTTTTTTTTTTTTTTGAAGGTTTTAGACCCCAATAATATATTTCCTAATCTTTGCTGGTCTGATGATTTCCTTAAGATGAGCAGCAGTTTCATTTAATAGAAACAGGACCAAATCGAACATTTAAAACACTTTTGAAACCAAAGCCAACTGCTCTCTGGCCAGACTGTAAGGGCTTGTAGCTGTCAATCAACCCCCAGTCTACCCCGCCTCCCTCATTAGGAAGGTAAACAATGAAAAGAAGAAGTAGATGATGAGGCAGATAGCAGAACAAATGAGGACCTAGAGGGAAACAGGACACCAGCTTAAAAAAA</dnaseq>|
 
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}}
[[Category:Intergenic]][[Category:NONHSAG027924]]
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[[Category:Intergenic]][[Category:NONHSAG027924]][[Category:Transcripts]]

Latest revision as of 23:20, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT071042

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2026 nt

Genomic location

chr2-:63271057..63274846

Exon number

4

Exons

63271057..63272578,63273172..63273276,63273617..63273782,63274571..63274846

Genome context

Sequence
000001 GGGCCTTACC CCGCCAGGCG CCGGAGTCCA CGCTCCACCG CCGCTGAGGG GCGTTCGGGC GCCACCGAGC AGCCCAAATT 000080
000081 GAAACCCCGA GAGGCTCGGG ACTAAAGCTG AAGGGGCAGG TAGAGGGGCC GCCCGGCGGT CCCAGACCAT CCTAGCAAAT 000160
000161 CTGGGGCGAG GGAAGGGTTG TCAGTTGGCC GATTGGGAGC GGCTTCGGGA GCGAAGGAGC TGCTTTTCGG CGAGGCCCCT 000240
000241 CGGGAGTGAA GGTTCCTCGA ATCAAGCGTA AACTGGGGCC CCCTCTGGGA TGGTGTAAAC TTATTCAGCT TCAAATGCAG 000320
000321 CCCAGTATCC TGCCCTAAGT TCCAGAGGAC CATTTTCCAC ATGAAAAGTC TTACGGATAG ACAAACTTCC ATTCAAGCCA 000400
000401 ATGTCAAGTT TTCATTGCAA GAAAGTAGCA GCCGTGTTTA AGGGCTTGTT TCTGGCTATG TTAAAGGACC ATCCTCTGAG 000480
000481 GAAAGCAGAG GAGAGGAACT CCATTATCCT TACAGTGAAA CGCAACCACT GCAGAAAAAC TCCACTGAGT TCGCTCCAAA 000560
000561 TGCTCATCTT CTTCTTCGGC CCTGGATGTC AGACAAACAG GACAAACAGG AAACAAAATT ATTTTTCTTC GTGGAGGGCA 000640
000641 GAGCAGCACT CCCCCGTCGC CCAGTATTTG GATCCCCAGC GGGAATGGGG AGCACCAGGC CAGTGGGAGG CTGCCCCGGC 000720
000721 CCTCCCGCGA CCTCTGGATT GAACTTTCCG CACACTTCTC GGCCCCTCGG CAGGTGGCCC AGCCTCGACC CGACCCCACT 000800
000801 GCCCACTCAC TGCTTCTCCT GCGCGTCCAG GTCCCTGACG AGCGCATCGC GCTTGTTCAC CAGGGCCACC AGCTCATCTA 000880
000881 GCAGAAGCTG TTCGCGTCGC TTCTGGGCCT CGGTCTTCTG CCAGTCTGCA GAAGACGGGA GGCTAGTTAC CCACCGGCAG 000960
000961 GGCCTCCGAA CACCCGGCCC CCCGCCCTCC CCTTCCCGCC TTTTCCAGTT TCCTTATATT TCTCAGCAAA CCACATTATA 001040
001041 GAGCCACTAG CTAGTGTTTT CTGGGGAGTT TGGCTGTTGT GGTGAAGGCT TCCTCGCTAA AAGTCTACTT CCTAAACAGG 001120
001121 TCCTGTGAAT GGAGATGGCT GCAGCAGTGT TGGAACCTGC TTAGAACCAG GTGTGAACTG GTGGCTAGCC TGAGGTGCGC 001200
001201 ACCTGAATCC AGCCAAAGTG GGGGAGGGGA GCTAGAGGCC CAGAAGAGGT TGGCCCAGGG GTTGGTAGTG GGGGAAGTGG 001280
001281 GTAAATGAGG AGGCGGGAAA CAGTGATGGG CGATAAAATC ATTCTGAAAA GGCTAGAGAA TCTGCCTGAG AACCTATCCT 001360
001361 CCTCCCCCAC CCCCACTCTC ACCCCAAACA GCCCATTCTT CGCTAATTTC CTCTTCGCTC TATTTTAGCA GTTGGATGTA 001440
001441 TCTCACACTG GGCGCCATAT GCTTCACAAT AACTTTAAAA GTAGTGAATC GGCTAATTAG CATTTTTCTT TGAAGTAAAA 001520
001521 AATAAATTTG CTCTGCAATA TTACACTGCA GCTCTCGATC GCATCACAGC CAGTTTTCTT TTGGAGACGT TTGCTGGGTG 001600
001601 GTTTCAAATC AAAGCACTTT TGCAAAGGAA AAATTACATA TTTCTTTCTG AAACCCTATG TTAAAGGTTG GAAAACCCGA 001680
001681 TGGGCAGTGC TCTTTCCATG GATGGGGGGC GTTTTTTTTT TTTTTTTTTG AAGGTTTTAG ACCCCAATAA TATATTTCCT 001760
001761 AATCTTTGCT GGTCTGATGA TTTCCTTAAG ATGAGCAGCA GTTTCATTTA ATAGAAACAG GACCAAATCG AACATTTAAA 001840
001841 ACACTTTTGA AACCAAAGCC AACTGCTCTC TGGCCAGACT GTAAGGGCTT GTAGCTGTCA ATCAACCCCC AGTCTACCCC 001920
001921 GCCTCCCTCA TTAGGAAGGT AAACAATGAA AAGAAGAAGT AGATGATGAG GCAGATAGCA GAACAAATGA GGACCTAGAG 002000
002001 GGAAACAGGA CACCAGCTTA AAAAAA
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Predicted Small Protein

Name NONHSAT071042_smProtein_1679:1810
Length 44
Molecular weight 4943.6944
Aromaticity 0.209302325581
Instability index 51.923255814
Isoelectric point 4.57611083984
Runs 7
Runs residual 0.0054873268879
Runs probability 0.0463825169707
Amino acid sequence MGSALSMDGGRFFFFFLKVLDPNNIFPNLCWSDDFLKMSSSFI
Secondary structure LLLEEELLLLEEEEEEEEELLLLLLLLLLLLLHHHHHHHHLLL
PRMN -
PiMo -