Difference between revisions of "NONHSAT093721"

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sequence = <dnaseq>attttacagaagggggaactgaggctcagtaggataatgtgatttgttcaaggtcacacagctagtaagtggtgcagccaggattggaacccaagcatctggctccagcgttctttcttaaGCTTCCTAGGGCACCCTGGAGGTTCCTTTCCATGTTCCTTTTTCATAAGCCCTGCCTGGGCATCCTAATTGGCCTAGCCTGCACAGTGTCTGAGCGTAGGGCCTTCTTGTCTCTCTGCTCCAGGTCTGTGGGGTGTGGCGGGCAGTGCCTCGGTTGTCTCTGCGGCTCCTTAGGGCAGAACAGCTGCATGTGGCACTTGTGACACTCACTCACCCTTCAGGGGAGGTCTGGGGGCCTCTCATCCGGCACCGGGCCCTGGCTGCAGAGACCTTCAGTGCCATCCTGACTCTAGAAGGCCCCCCACAGCAGGGCGTAGGGGGCATCACCCTGCTCACTCTCAGTGACACAGAGGACTCCTTGCATTTTTTGCTGCTCTTCCGAGGGCTGCTGGAACCCAGGAGTGGGGGTAAGTGGGATGGGGGCAAAACACGTGAGAAGGTTAGGGAGAGCACCTGTCTCAGAAAGGCCCACATGTGCGGCCTTGCAGGACTAACCCAGGTTCCCTTGAGGCTCCAGATTCTACACCAGGGGCAGCTACTGCGAGAACTTCAGGCCAATGTCT</dnaseq>|
 
sequence = <dnaseq>attttacagaagggggaactgaggctcagtaggataatgtgatttgttcaaggtcacacagctagtaagtggtgcagccaggattggaacccaagcatctggctccagcgttctttcttaaGCTTCCTAGGGCACCCTGGAGGTTCCTTTCCATGTTCCTTTTTCATAAGCCCTGCCTGGGCATCCTAATTGGCCTAGCCTGCACAGTGTCTGAGCGTAGGGCCTTCTTGTCTCTCTGCTCCAGGTCTGTGGGGTGTGGCGGGCAGTGCCTCGGTTGTCTCTGCGGCTCCTTAGGGCAGAACAGCTGCATGTGGCACTTGTGACACTCACTCACCCTTCAGGGGAGGTCTGGGGGCCTCTCATCCGGCACCGGGCCCTGGCTGCAGAGACCTTCAGTGCCATCCTGACTCTAGAAGGCCCCCCACAGCAGGGCGTAGGGGGCATCACCCTGCTCACTCTCAGTGACACAGAGGACTCCTTGCATTTTTTGCTGCTCTTCCGAGGGCTGCTGGAACCCAGGAGTGGGGGTAAGTGGGATGGGGGCAAAACACGTGAGAAGGTTAGGGAGAGCACCTGTCTCAGAAAGGCCCACATGTGCGGCCTTGCAGGACTAACCCAGGTTCCCTTGAGGCTCCAGATTCTACACCAGGGGCAGCTACTGCGAGAACTTCAGGCCAATGTCT</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG036861]]
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[[Category:Sense]][[Category:NONHSAG036861]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 00:48, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT093721

Source

NONCODE4.0

Same with

,

Classification

sense

Length

683 nt

Genomic location

chr3+:184099933..184100718

Exon number

2

Exons

184099933..184100318,184100422..184100718

Genome context

Sequence
000001 attttacaga agggggaact gaggctcagt aggataatgt gatttgttca aggtcacaca gctagtaagt ggtgcagcca 000080
000081 ggattggaac ccaagcatct ggctccagcg ttctttctta aGCTTCCTAG GGCACCCTGG AGGTTCCTTT CCATGTTCCT 000160
000161 TTTTCATAAG CCCTGCCTGG GCATCCTAAT TGGCCTAGCC TGCACAGTGT CTGAGCGTAG GGCCTTCTTG TCTCTCTGCT 000240
000241 CCAGGTCTGT GGGGTGTGGC GGGCAGTGCC TCGGTTGTCT CTGCGGCTCC TTAGGGCAGA ACAGCTGCAT GTGGCACTTG 000320
000321 TGACACTCAC TCACCCTTCA GGGGAGGTCT GGGGGCCTCT CATCCGGCAC CGGGCCCTGG CTGCAGAGAC CTTCAGTGCC 000400
000401 ATCCTGACTC TAGAAGGCCC CCCACAGCAG GGCGTAGGGG GCATCACCCT GCTCACTCTC AGTGACACAG AGGACTCCTT 000480
000481 GCATTTTTTG CTGCTCTTCC GAGGGCTGCT GGAACCCAGG AGTGGGGGTA AGTGGGATGG GGGCAAAACA CGTGAGAAGG 000560
000561 TTAGGGAGAG CACCTGTCTC AGAAAGGCCC ACATGTGCGG CCTTGCAGGA CTAACCCAGG TTCCCTTGAG GCTCCAGATT 000640
000641 CTACACCAGG GGCAGCTACT GCGAGAACTT CAGGCCAATG TCT
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Predicted Small Protein

Name NONHSAT093721_smProtein_152:322
Length 57
Molecular weight 5979.1671
Aromaticity 0.0714285714286
Instability index 77.4321428571
Isoelectric point 8.52337646484
Runs 10
Runs residual 0.0252732240437
Runs probability 0.0482600247306
Amino acid sequence MFLFHKPCLGILIGLACTVSERRAFLSLCSRSVGCGGQCLGCLCGSLGQNSCMWHL
Secondary structure LEEEELLLHHHEEELLLLLHHHHHHHHHHLLLLLLLLHHHHHHHLLLLLLLLLLLL
PRMN -
PiMo -