Difference between revisions of "NONHSAT094549"

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sequence = <dnaseq>TCGCTCTGTAACCTGCGGGTATTGGATGATTCGTAGCTAAGACTTCGCGACACCCTTGAAGCTGAGAAATGGAACCCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGTCTCCCTAGaggaaggaacagagccacagagaaaaatgacttgctcacaacagaagagccagtagtaaaacacagGTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTATGCAGCCGTGAAAGGACTGGGCAAAGATGCTGCTCTTAGTATTTCATGATTGGTGGAAGCTCTCAAGCTCCAGGAGCAACTTAAGGCTCCCGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTATGCTTCGTGCTGAGCATACTGGGGAACCCATCAGTGGTGCTTCTAGACGAGCTGTTCACCGGGATGGACCCTGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCATTAAAAACCAGGAGAGGGGCGCCCTCTTGACCACCCATTACATGTCAGAGGCTAAGTCTCTGTGTGACCGTGTGGCCATCATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACAGCTGAAAAGTTTGGTAAAGATTATTTACTAGAAATAAAAATGAAAGAACCTACTCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCATGTAAGTTACCTGTGGAGGATGTCCACCCTCTGTCTCAGGCCTTTTTCAAATTAAAGGCAGTGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTGTTCTTAGAACTCTGTAAAGAGCAGGCGCTGGGAAATGTTGATGA</dnaseq>|
 
sequence = <dnaseq>TCGCTCTGTAACCTGCGGGTATTGGATGATTCGTAGCTAAGACTTCGCGACACCCTTGAAGCTGAGAAATGGAACCCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGTCTCCCTAGaggaaggaacagagccacagagaaaaatgacttgctcacaacagaagagccagtagtaaaacacagGTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTATGCAGCCGTGAAAGGACTGGGCAAAGATGCTGCTCTTAGTATTTCATGATTGGTGGAAGCTCTCAAGCTCCAGGAGCAACTTAAGGCTCCCGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTATGCTTCGTGCTGAGCATACTGGGGAACCCATCAGTGGTGCTTCTAGACGAGCTGTTCACCGGGATGGACCCTGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCATTAAAAACCAGGAGAGGGGCGCCCTCTTGACCACCCATTACATGTCAGAGGCTAAGTCTCTGTGTGACCGTGTGGCCATCATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACAGCTGAAAAGTTTGGTAAAGATTATTTACTAGAAATAAAAATGAAAGAACCTACTCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCATGTAAGTTACCTGTGGAGGATGTCCACCCTCTGTCTCAGGCCTTTTTCAAATTAAAGGCAGTGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTGTTCTTAGAACTCTGTAAAGAGCAGGCGCTGGGAAATGTTGATGA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG037205]]
+
[[Category:Intergenic]][[Category:NONHSAG037205]][[Category:Transcripts]]

Latest revision as of 00:51, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT094549

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1423 nt

Genomic location

chr4-:419604..467840

Exon number

4

Exons

419604..420762,431235..431300,466364..466490,467770..467840

Genome context

Sequence
000001 TCGCTCTGTA ACCTGCGGGT ATTGGATGAT TCGTAGCTAA GACTTCGCGA CACCCTTGAA GCTGAGAAAT GGAACCCTTA 000080
000081 ACATTCAGGG ATGTGGCCAT AGAATTCTCT CCAGAAGAGT GGAAATGCCT GGACCCTGCC CAGCAGAATT TGTATAGAGA 000160
000161 TGTGATGTTG GAGAACTACA GAAACCTGGT CTCCCTAGag gaaggaacag agccacagag aaaaatgact tgctcacaac 000240
000241 agaagagcca gtagtaaaac acagGTGTCT GGAAATGAAG TATGGAAATG AAATCATGAA TAAAGACCCA GTTTTCAGAA 000320
000321 TCTCTCCACG AAGTAGAGGA ACTCATACCA ATCCAGAAGA GCCTGAAGAA GATGTTCAAG CTGAAAGAGT CCAAGCAGCA 000400
000401 AATGCACTCA CTACTCCAAA CTTGGAGGAG GAACCAGTCA TAACTGCAAG CTGTTTACAC AAGGAATATT ATGAGACAAA 000480
000481 GAAAGTTGCT TTTCAACAAC AAAGAAGAAA GCAGCCATCA GAAATGTTTC GTTTTGTGTT AAAAAGTGAA GTTTTGGGAT 000560
000561 TACTAGGACA CAATGGAGCT GGCAAAAGTA CTTCCATTAA AATGATAACT GGGTGCACAG TGCCAACTGC AGGAGTGGTG 000640
000641 GTGTTACAAG GCAACAGAGC ATCAGTAAGG CAACAGCGTG ACAACAGCCT CAAGTTCTTG GGTACTGCCC TCAGGAGAAC 000720
000721 TCACTGTGTC CCAAACTTAC AATGAAAGAG CATTTGGAGT TGTATGCAGC CGTGAAAGGA CTGGGCAAAG ATGCTGCTCT 000800
000801 TAGTATTTCA TGATTGGTGG AAGCTCTCAA GCTCCAGGAG CAACTTAAGG CTCCCGTGAA AACTCTATCA GAGGGAATAA 000880
000881 AGAGAAAGCT ATGCTTCGTG CTGAGCATAC TGGGGAACCC ATCAGTGGTG CTTCTAGACG AGCTGTTCAC CGGGATGGAC 000960
000961 CCTGAGGGGC AGCAGCAAAT GTGGCAGATA CTTCAGGCTA CCATTAAAAA CCAGGAGAGG GGCGCCCTCT TGACCACCCA 001040
001041 TTACATGTCA GAGGCTAAGT CTCTGTGTGA CCGTGTGGCC ATCATGGTGT CAGGAACGCT AAGGTGTATT GGTTCCATTC 001120
001121 AACAGCTGAA AAGTTTGGTA AAGATTATTT ACTAGAAATA AAAATGAAAG AACCTACTCA GGTGGAAGCT CTCCACACAG 001200
001201 AGATTTTGAA GCTTTTCCCA CAGGCTGCTT GGCAGGAAAG ATATTCCTCT TTAATGGCAT GTAAGTTACC TGTGGAGGAT 001280
001281 GTCCACCCTC TGTCTCAGGC CTTTTTCAAA TTAAAGGCAG TGAAACAGAC CTTCAACCTG GAGGAATACA GCCTCTCTCA 001360
001361 GGCTACCTTG GAGCAGGTGT TCTTAGAACT CTGTAAAGAG CAGGCGCTGG GAAATGTTGA TGA
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Predicted Small Protein

Name NONHSAT094549_smProtein_68:253
Length 62
Molecular weight 7252.0949
Aromaticity 0.0819672131148
Instability index 68.8721311475
Isoelectric point 4.60919189453
Runs 11
Runs residual 0.0275108347466
Runs probability 0.0359316535787
Amino acid sequence MEPLTFRDVAIEFSPEEWKCLDPAQQNLYRDVMLENYRNLVSLEEGTEPQRKMTCSQQKS
Q
Secondary structure LLLLLLLEEEEEELLHHHLLLLHHHHHHHHHHHHHHHLLLEELLLLLLLLLLEEELLLLL
L
PRMN -
PiMo -