Difference between revisions of "NONHSAT117357"
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sequence = <dnaseq>AGTGTCCATGATAGTgaatccattttggttgtgttggatttgaggtggcaaagaaataaggaactggcatgtgactgcgggaaattggagctacaagacaggagttcaggtgaaaagataggactagagttggatgctgaaacttgcagtcacacaaggacttgaacctagagcttttctaaagcccgtactctttccagtacCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCCTCTCTCTCTTCACTTCCATGTGATCTGTTACTCATTTTGTCAAGACATCCTGGGTCCCAGAGACCACTCTTATTCCCAGGTGTGTGACCTCCTCCTACAGACTACAGTGGGAAAGACACCATCTCCAGgtgccaggtgctacacaagatactggctatagcagcgaacaggacagcccgtctcatcctcatggaggtcacaggacaatgagaagaaagacttttttatttttatttttttgagacggagttttgctcttgttgccgaggctggagtgcagtggtgtgatctcgactcactgcaacctccgcctcccaagttcaagcaattatcctgcctcaggcctcttgagtagctgggattacaggcacctgccaccactcctggctaattttttgtatttttagtagagacaggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgcagggattacaggcatgagccatcgaacccggcccaagaagaaagacattgaacaagtaattacagggtattgggtgttatgaaagaaaagcatggtactgtataatgaggtcatctaatttagtctggggtgacaaggaatgcctactaaagaaggtatcgtttaagacatacctggggaatagcggtagtGAAAATAGAagctccagaaatgcagggaccatggctgacatgtttaccatgccagtgtctggcatggaagaggcccaattcctttggttgaaaggatgaaGTAATCTAGCTGAATAAAGGGTGTGTGCGTGCACGCAGGTGTGTTTGTAGTTAACCTTCCTTTAGCTCAGCTTAGGAAACAGCTTTTGTAAAACTGCGTAACTAGTAGTAGGTGAGAGAGGAATACGAATGATATACACACCATTAAAGACAACTTACTAACAGCATGA</dnaseq>| | sequence = <dnaseq>AGTGTCCATGATAGTgaatccattttggttgtgttggatttgaggtggcaaagaaataaggaactggcatgtgactgcgggaaattggagctacaagacaggagttcaggtgaaaagataggactagagttggatgctgaaacttgcagtcacacaaggacttgaacctagagcttttctaaagcccgtactctttccagtacCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCCTCTCTCTCTTCACTTCCATGTGATCTGTTACTCATTTTGTCAAGACATCCTGGGTCCCAGAGACCACTCTTATTCCCAGGTGTGTGACCTCCTCCTACAGACTACAGTGGGAAAGACACCATCTCCAGgtgccaggtgctacacaagatactggctatagcagcgaacaggacagcccgtctcatcctcatggaggtcacaggacaatgagaagaaagacttttttatttttatttttttgagacggagttttgctcttgttgccgaggctggagtgcagtggtgtgatctcgactcactgcaacctccgcctcccaagttcaagcaattatcctgcctcaggcctcttgagtagctgggattacaggcacctgccaccactcctggctaattttttgtatttttagtagagacaggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgcagggattacaggcatgagccatcgaacccggcccaagaagaaagacattgaacaagtaattacagggtattgggtgttatgaaagaaaagcatggtactgtataatgaggtcatctaatttagtctggggtgacaaggaatgcctactaaagaaggtatcgtttaagacatacctggggaatagcggtagtGAAAATAGAagctccagaaatgcagggaccatggctgacatgtttaccatgccagtgtctggcatggaagaggcccaattcctttggttgaaaggatgaaGTAATCTAGCTGAATAAAGGGTGTGTGCGTGCACGCAGGTGTGTTTGTAGTTAACCTTCCTTTAGCTCAGCTTAGGAAACAGCTTTTGTAAAACTGCGTAACTAGTAGTAGGTGAGAGAGGAATACGAATGATATACACACCATTAAAGACAACTTACTAACAGCATGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG046080]] | + | [[Category:Intergenic]][[Category:NONHSAG046080]][[Category:Transcripts]] |
Revision as of 10:59, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117357 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1202 nt |
| Genomic location |
chr6_mann_hap4+:2082687..2108112 |
| Exon number |
4 |
| Exons |
2082687..2082813,2104553..2104734,2106751..2106818,2107288..2108112 |
| Genome context |
|
| Sequence |
000001 AGTGTCCATG ATAGTgaatc cattttggtt gtgttggatt tgaggtggca aagaaataag gaactggcat gtgactgcgg 000080
000081 gaaattggag ctacaagaca ggagttcagg tgaaaagata ggactagagt tggatgctga aacttgcagt cacacaagga 000160 000161 cttgaaccta gagcttttct aaagcccgta ctctttccag tacCCTGAGC CAGGGGAGCC AGCGGGCAGA AATGACGTGT 000240 000241 GAGGTACCCT CTCTCTCTTC ACTTCCATGT GATCTGTTAC TCATTTTGTC AAGACATCCT GGGTCCCAGA GACCACTCTT 000320 000321 ATTCCCAGGT GTGTGACCTC CTCCTACAGA CTACAGTGGG AAAGACACCA TCTCCAGgtg ccaggtgcta cacaagatac 000400 000401 tggctatagc agcgaacagg acagcccgtc tcatcctcat ggaggtcaca ggacaatgag aagaaagact tttttatttt 000480 000481 tatttttttg agacggagtt ttgctcttgt tgccgaggct ggagtgcagt ggtgtgatct cgactcactg caacctccgc 000560 000561 ctcccaagtt caagcaatta tcctgcctca ggcctcttga gtagctggga ttacaggcac ctgccaccac tcctggctaa 000640 000641 ttttttgtat ttttagtaga gacaggggtt tcatcatgtt ggccaggctg gtctcgaact cctgacctca ggtgatccac 000720 000721 ccacctcggc ctcccaaagt gcagggatta caggcatgag ccatcgaacc cggcccaaga agaaagacat tgaacaagta 000800 000801 attacagggt attgggtgtt atgaaagaaa agcatggtac tgtataatga ggtcatctaa tttagtctgg ggtgacaagg 000880 000881 aatgcctact aaagaaggta tcgtttaaga catacctggg gaatagcggt agtGAAAATA GAagctccag aaatgcaggg 000960 000961 accatggctg acatgtttac catgccagtg tctggcatgg aagaggccca attcctttgg ttgaaaggat gaaGTAATCT 001040 001041 AGCTGAATAA AGGGTGTGTG CGTGCACGCA GGTGTGTTTG TAGTTAACCT TCCTTTAGCT CAGCTTAGGA AACAGCTTTT 001120 001121 GTAAAACTGC GTAACTAGTA GTAGGTGAGA GAGGAATACG AATGATATAC ACACCATTAA AGACAACTTA CTAACAGCAT 001200 001201 GA |
Predicted Small Protein
| Name | NONHSAT117357_smProtein_755:823 |
| Length | 23 |
| Molecular weight | 2686.139 |
| Aromaticity | 0.0909090909091 |
| Instability index | 47.2818181818 |
| Isoelectric point | 9.99200439453 |
| Runs | 6 |
| Runs residual | 0.0363636363636 |
| Runs probability | 0.0293823235 |
| Amino acid sequence | MSHRTRPKKKDIEQVITGYWVL |
| Secondary structure | LLLLLLLLLLHHHHHEELEEEL |
| PRMN | - |
| PiMo | - |
