Difference between revisions of "NONHSAT137573"
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sequence = <dnaseq>AAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGAAACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAGAAGGTAGCTCCTAGGAGGGATATATGGGTCGTTCTTTCCTTTTTCCTTATTTAAATGGGTTTTTATTGACACCATGTCGCGCCAAAATGGATTCCATCTCCTCAGAGCTTTCCTAGGAACAGCCTAACCTCTTGGGCCTAACTTTATTTTTTTTTTGTTCTGCCTTTCATGTCCAGACTTATTAGTTTTAATTAATTTGTTTGTAACGTATTCATTATGCACTAGATTAAACAATTTTTTTCTGTGCCCACTATACCCCAAATGTGGAGTTTTGGGCAAAAACTTAACATTTGTTCTTGAAGCATCTCAGAGGTGTGTGTGTGTGTGTGTAATCTTTGGGGGACTTACATTGCCAGGTTGATTACTCACTAAGAAAAGAGCTAGATTTCCTGTTTTCAAATCTGTTGGCGAAATTAAGTTTATGTTAAGCATAGCATGTTTACTATATATATGGGGAAGACAGTTAAGAGTGACATCTAATATGTTGTTAAATGCTTATGTGATTAAAGTAAAtttcatgcattaccgcggagtatgaattgctgcaaccttttagaaaagaatctggcaatatttagggaaataaaaaatacagatatcacttgaacaaaaactggaattcaaaagtctgacttttaagaatctatcctacagaaataaaagtaccagtatataatgacgcatgaacaaggatacttttgtactattttgttcttgtgacaactggaaacaacctgtgtatccatcaataggagaatgtttgagtaaattttggtacataaatattatgaaatattttgacttttgacctagagaatcttatgatggatggttatgtgagaaaagtaagttgcagaatagtctagtatgagtccttttTTTTTTTTGATGGGGTGATGAAGGAATGCAAGATTAACTTCTTTATCTTTTGGAGGAGACgttaaatatattatgaaatacttaagacatatacagatatacaaggaataatacaatgaacctctcttctcaccacccaacgtaaaaaaaaaatcaaacattaacgtgacagttgaagttctctgtgtacccatccctgattgcatctctctcttctctcatccccagaggtaaccattattttaaacttagtgatttttaccatgcatttcttaaacttctgtgacataGCAACTTCTAGCATGGATTATTTTTTGTAAATATTGAAGATGAATTTTTAAAAAAAGTCAATGAAAGAAGA</dnaseq>| | sequence = <dnaseq>AAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGAAACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAGAAGGTAGCTCCTAGGAGGGATATATGGGTCGTTCTTTCCTTTTTCCTTATTTAAATGGGTTTTTATTGACACCATGTCGCGCCAAAATGGATTCCATCTCCTCAGAGCTTTCCTAGGAACAGCCTAACCTCTTGGGCCTAACTTTATTTTTTTTTTGTTCTGCCTTTCATGTCCAGACTTATTAGTTTTAATTAATTTGTTTGTAACGTATTCATTATGCACTAGATTAAACAATTTTTTTCTGTGCCCACTATACCCCAAATGTGGAGTTTTGGGCAAAAACTTAACATTTGTTCTTGAAGCATCTCAGAGGTGTGTGTGTGTGTGTGTAATCTTTGGGGGACTTACATTGCCAGGTTGATTACTCACTAAGAAAAGAGCTAGATTTCCTGTTTTCAAATCTGTTGGCGAAATTAAGTTTATGTTAAGCATAGCATGTTTACTATATATATGGGGAAGACAGTTAAGAGTGACATCTAATATGTTGTTAAATGCTTATGTGATTAAAGTAAAtttcatgcattaccgcggagtatgaattgctgcaaccttttagaaaagaatctggcaatatttagggaaataaaaaatacagatatcacttgaacaaaaactggaattcaaaagtctgacttttaagaatctatcctacagaaataaaagtaccagtatataatgacgcatgaacaaggatacttttgtactattttgttcttgtgacaactggaaacaacctgtgtatccatcaataggagaatgtttgagtaaattttggtacataaatattatgaaatattttgacttttgacctagagaatcttatgatggatggttatgtgagaaaagtaagttgcagaatagtctagtatgagtccttttTTTTTTTTGATGGGGTGATGAAGGAATGCAAGATTAACTTCTTTATCTTTTGGAGGAGACgttaaatatattatgaaatacttaagacatatacagatatacaaggaataatacaatgaacctctcttctcaccacccaacgtaaaaaaaaaatcaaacattaacgtgacagttgaagttctctgtgtacccatccctgattgcatctctctcttctctcatccccagaggtaaccattattttaaacttagtgatttttaccatgcatttcttaaacttctgtgacataGCAACTTCTAGCATGGATTATTTTTTGTAAATATTGAAGATGAATTTTTAAAAAAAGTCAATGAAAGAAGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG054784]] | + | [[Category:Intergenic]][[Category:NONHSAG054784]][[Category:Transcripts]] |
Latest revision as of 02:46, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137573 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1438 nt |
Genomic location |
chrX+:73164179..73165734 |
Exon number |
2 |
Exons |
73164179..73164300,73164419..73165734 |
Genome context |
|
Sequence |
000001 AAGACTTAAG ATGGCGGCGT TTGCACGGAG TGCAATCACT GCGTCCTTAC GGGGGTTGCA AGGCGTCCGA AGTATGAGTC 000080
000081 CACTAACAAA AGTCCAGAAA CTCGCCAGTT AATAGTATTG TGTCTCTTCA AAATATCGGA GAATAATTTC TTTCTCGCTG 000160 000161 ATCGCCTAAC TTCTACTGAC GAAGCTTGGA AGTTGCAGAA GGTAGCTCCT AGGAGGGATA TATGGGTCGT TCTTTCCTTT 000240 000241 TTCCTTATTT AAATGGGTTT TTATTGACAC CATGTCGCGC CAAAATGGAT TCCATCTCCT CAGAGCTTTC CTAGGAACAG 000320 000321 CCTAACCTCT TGGGCCTAAC TTTATTTTTT TTTTGTTCTG CCTTTCATGT CCAGACTTAT TAGTTTTAAT TAATTTGTTT 000400 000401 GTAACGTATT CATTATGCAC TAGATTAAAC AATTTTTTTC TGTGCCCACT ATACCCCAAA TGTGGAGTTT TGGGCAAAAA 000480 000481 CTTAACATTT GTTCTTGAAG CATCTCAGAG GTGTGTGTGT GTGTGTGTAA TCTTTGGGGG ACTTACATTG CCAGGTTGAT 000560 000561 TACTCACTAA GAAAAGAGCT AGATTTCCTG TTTTCAAATC TGTTGGCGAA ATTAAGTTTA TGTTAAGCAT AGCATGTTTA 000640 000641 CTATATATAT GGGGAAGACA GTTAAGAGTG ACATCTAATA TGTTGTTAAA TGCTTATGTG ATTAAAGTAA Atttcatgca 000720 000721 ttaccgcgga gtatgaattg ctgcaacctt ttagaaaaga atctggcaat atttagggaa ataaaaaata cagatatcac 000800 000801 ttgaacaaaa actggaattc aaaagtctga cttttaagaa tctatcctac agaaataaaa gtaccagtat ataatgacgc 000880 000881 atgaacaagg atacttttgt actattttgt tcttgtgaca actggaaaca acctgtgtat ccatcaatag gagaatgttt 000960 000961 gagtaaattt tggtacataa atattatgaa atattttgac ttttgaccta gagaatctta tgatggatgg ttatgtgaga 001040 001041 aaagtaagtt gcagaatagt ctagtatgag tccttttTTT TTTTTGATGG GGTGATGAAG GAATGCAAGA TTAACTTCTT 001120 001121 TATCTTTTGG AGGAGACgtt aaatatatta tgaaatactt aagacatata cagatataca aggaataata caatgaacct 001200 001201 ctcttctcac cacccaacgt aaaaaaaaaa tcaaacatta acgtgacagt tgaagttctc tgtgtaccca tccctgattg 001280 001281 catctctctc ttctctcatc cccagaggta accattattt taaacttagt gatttttacc atgcatttct taaacttctg 001360 001361 tgacataGCA ACTTCTAGCA TGGATTATTT TTTGTAAATA TTGAAGATGA ATTTTTAAAA AAAGTCAATG AAAGAAGA |
Predicted Small Protein
Name | NONHSAT137573_smProtein_221:313 |
Length | 31 |
Molecular weight | 3381.9394 |
Aromaticity | 0.133333333333 |
Instability index | 53.3366666667 |
Isoelectric point | 7.95404052734 |
Runs | 5 |
Runs residual | 0.0355855855856 |
Runs probability | 0.00448683978095 |
Amino acid sequence | MGRSFLFPYLNGFLLTPCRAKMDSISSELS |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |