Difference between revisions of "NONHSAT137573"

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sequence = <dnaseq>AAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGAAACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAGAAGGTAGCTCCTAGGAGGGATATATGGGTCGTTCTTTCCTTTTTCCTTATTTAAATGGGTTTTTATTGACACCATGTCGCGCCAAAATGGATTCCATCTCCTCAGAGCTTTCCTAGGAACAGCCTAACCTCTTGGGCCTAACTTTATTTTTTTTTTGTTCTGCCTTTCATGTCCAGACTTATTAGTTTTAATTAATTTGTTTGTAACGTATTCATTATGCACTAGATTAAACAATTTTTTTCTGTGCCCACTATACCCCAAATGTGGAGTTTTGGGCAAAAACTTAACATTTGTTCTTGAAGCATCTCAGAGGTGTGTGTGTGTGTGTGTAATCTTTGGGGGACTTACATTGCCAGGTTGATTACTCACTAAGAAAAGAGCTAGATTTCCTGTTTTCAAATCTGTTGGCGAAATTAAGTTTATGTTAAGCATAGCATGTTTACTATATATATGGGGAAGACAGTTAAGAGTGACATCTAATATGTTGTTAAATGCTTATGTGATTAAAGTAAAtttcatgcattaccgcggagtatgaattgctgcaaccttttagaaaagaatctggcaatatttagggaaataaaaaatacagatatcacttgaacaaaaactggaattcaaaagtctgacttttaagaatctatcctacagaaataaaagtaccagtatataatgacgcatgaacaaggatacttttgtactattttgttcttgtgacaactggaaacaacctgtgtatccatcaataggagaatgtttgagtaaattttggtacataaatattatgaaatattttgacttttgacctagagaatcttatgatggatggttatgtgagaaaagtaagttgcagaatagtctagtatgagtccttttTTTTTTTTGATGGGGTGATGAAGGAATGCAAGATTAACTTCTTTATCTTTTGGAGGAGACgttaaatatattatgaaatacttaagacatatacagatatacaaggaataatacaatgaacctctcttctcaccacccaacgtaaaaaaaaaatcaaacattaacgtgacagttgaagttctctgtgtacccatccctgattgcatctctctcttctctcatccccagaggtaaccattattttaaacttagtgatttttaccatgcatttcttaaacttctgtgacataGCAACTTCTAGCATGGATTATTTTTTGTAAATATTGAAGATGAATTTTTAAAAAAAGTCAATGAAAGAAGA</dnaseq>|
 
sequence = <dnaseq>AAGACTTAAGATGGCGGCGTTTGCACGGAGTGCAATCACTGCGTCCTTACGGGGGTTGCAAGGCGTCCGAAGTATGAGTCCACTAACAAAAGTCCAGAAACTCGCCAGTTAATAGTATTGTGTCTCTTCAAAATATCGGAGAATAATTTCTTTCTCGCTGATCGCCTAACTTCTACTGACGAAGCTTGGAAGTTGCAGAAGGTAGCTCCTAGGAGGGATATATGGGTCGTTCTTTCCTTTTTCCTTATTTAAATGGGTTTTTATTGACACCATGTCGCGCCAAAATGGATTCCATCTCCTCAGAGCTTTCCTAGGAACAGCCTAACCTCTTGGGCCTAACTTTATTTTTTTTTTGTTCTGCCTTTCATGTCCAGACTTATTAGTTTTAATTAATTTGTTTGTAACGTATTCATTATGCACTAGATTAAACAATTTTTTTCTGTGCCCACTATACCCCAAATGTGGAGTTTTGGGCAAAAACTTAACATTTGTTCTTGAAGCATCTCAGAGGTGTGTGTGTGTGTGTGTAATCTTTGGGGGACTTACATTGCCAGGTTGATTACTCACTAAGAAAAGAGCTAGATTTCCTGTTTTCAAATCTGTTGGCGAAATTAAGTTTATGTTAAGCATAGCATGTTTACTATATATATGGGGAAGACAGTTAAGAGTGACATCTAATATGTTGTTAAATGCTTATGTGATTAAAGTAAAtttcatgcattaccgcggagtatgaattgctgcaaccttttagaaaagaatctggcaatatttagggaaataaaaaatacagatatcacttgaacaaaaactggaattcaaaagtctgacttttaagaatctatcctacagaaataaaagtaccagtatataatgacgcatgaacaaggatacttttgtactattttgttcttgtgacaactggaaacaacctgtgtatccatcaataggagaatgtttgagtaaattttggtacataaatattatgaaatattttgacttttgacctagagaatcttatgatggatggttatgtgagaaaagtaagttgcagaatagtctagtatgagtccttttTTTTTTTTGATGGGGTGATGAAGGAATGCAAGATTAACTTCTTTATCTTTTGGAGGAGACgttaaatatattatgaaatacttaagacatatacagatatacaaggaataatacaatgaacctctcttctcaccacccaacgtaaaaaaaaaatcaaacattaacgtgacagttgaagttctctgtgtacccatccctgattgcatctctctcttctctcatccccagaggtaaccattattttaaacttagtgatttttaccatgcatttcttaaacttctgtgacataGCAACTTCTAGCATGGATTATTTTTTGTAAATATTGAAGATGAATTTTTAAAAAAAGTCAATGAAAGAAGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG054784]]
+
[[Category:Intergenic]][[Category:NONHSAG054784]][[Category:Transcripts]]

Latest revision as of 02:46, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT137573

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1438 nt

Genomic location

chrX+:73164179..73165734

Exon number

2

Exons

73164179..73164300,73164419..73165734

Genome context

Sequence
000001 AAGACTTAAG ATGGCGGCGT TTGCACGGAG TGCAATCACT GCGTCCTTAC GGGGGTTGCA AGGCGTCCGA AGTATGAGTC 000080
000081 CACTAACAAA AGTCCAGAAA CTCGCCAGTT AATAGTATTG TGTCTCTTCA AAATATCGGA GAATAATTTC TTTCTCGCTG 000160
000161 ATCGCCTAAC TTCTACTGAC GAAGCTTGGA AGTTGCAGAA GGTAGCTCCT AGGAGGGATA TATGGGTCGT TCTTTCCTTT 000240
000241 TTCCTTATTT AAATGGGTTT TTATTGACAC CATGTCGCGC CAAAATGGAT TCCATCTCCT CAGAGCTTTC CTAGGAACAG 000320
000321 CCTAACCTCT TGGGCCTAAC TTTATTTTTT TTTTGTTCTG CCTTTCATGT CCAGACTTAT TAGTTTTAAT TAATTTGTTT 000400
000401 GTAACGTATT CATTATGCAC TAGATTAAAC AATTTTTTTC TGTGCCCACT ATACCCCAAA TGTGGAGTTT TGGGCAAAAA 000480
000481 CTTAACATTT GTTCTTGAAG CATCTCAGAG GTGTGTGTGT GTGTGTGTAA TCTTTGGGGG ACTTACATTG CCAGGTTGAT 000560
000561 TACTCACTAA GAAAAGAGCT AGATTTCCTG TTTTCAAATC TGTTGGCGAA ATTAAGTTTA TGTTAAGCAT AGCATGTTTA 000640
000641 CTATATATAT GGGGAAGACA GTTAAGAGTG ACATCTAATA TGTTGTTAAA TGCTTATGTG ATTAAAGTAA Atttcatgca 000720
000721 ttaccgcgga gtatgaattg ctgcaacctt ttagaaaaga atctggcaat atttagggaa ataaaaaata cagatatcac 000800
000801 ttgaacaaaa actggaattc aaaagtctga cttttaagaa tctatcctac agaaataaaa gtaccagtat ataatgacgc 000880
000881 atgaacaagg atacttttgt actattttgt tcttgtgaca actggaaaca acctgtgtat ccatcaatag gagaatgttt 000960
000961 gagtaaattt tggtacataa atattatgaa atattttgac ttttgaccta gagaatctta tgatggatgg ttatgtgaga 001040
001041 aaagtaagtt gcagaatagt ctagtatgag tccttttTTT TTTTTGATGG GGTGATGAAG GAATGCAAGA TTAACTTCTT 001120
001121 TATCTTTTGG AGGAGACgtt aaatatatta tgaaatactt aagacatata cagatataca aggaataata caatgaacct 001200
001201 ctcttctcac cacccaacgt aaaaaaaaaa tcaaacatta acgtgacagt tgaagttctc tgtgtaccca tccctgattg 001280
001281 catctctctc ttctctcatc cccagaggta accattattt taaacttagt gatttttacc atgcatttct taaacttctg 001360
001361 tgacataGCA ACTTCTAGCA TGGATTATTT TTTGTAAATA TTGAAGATGA ATTTTTAAAA AAAGTCAATG AAAGAAGA
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Predicted Small Protein

Name NONHSAT137573_smProtein_221:313
Length 31
Molecular weight 3381.9394
Aromaticity 0.133333333333
Instability index 53.3366666667
Isoelectric point 7.95404052734
Runs 5
Runs residual 0.0355855855856
Runs probability 0.00448683978095
Amino acid sequence MGRSFLFPYLNGFLLTPCRAKMDSISSELS
Secondary structure LLLEELLLLLLLLLLLLLLLLLLHHHLLLL
PRMN -
PiMo -