Difference between revisions of "NONHSAT072515"

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sequence = <dnaseq>CTCCACACTGGTTGGTGACCTGGCTCTGCAGTTCACTCTGCTGCTTCAGATGAAAATTTTCAGGTCTGTCTGCCACTGTAGTGAAGGACTGCTTTGGGTAGTGTCTGTGGAGAAACTTTTTAAAGGACATAGTTAAAATATTGTGCTACAAACCAATTCTTGAACACCAATCGTTTTGTCCTACCTCTCTGTGACAGTGAAAGATGGCTGTGCTCTTGGCAAAGGTCATCTCTCTGTCATGATTCTGGATCTCCTTTTCTTCTCCTGATTATCTGTCACTCAGTTATCCCCACTGTCTTCCACAACTTTAACCTCAGCTTCTCTATTCTAGGAGACTCTTCTCGCAGGCTCAAGGCTCTCCTACCCTCCATCATTCCTCCCTCTACCCCACACAGCCAGCATGTGTCCAGCTAGTCTATCCTTCAGCCAAACTTCCTTAGAAAGAGGCCTTACCTCACTGTCCCTACCCATCTCCTCTCTGACTCACTTCTTAACTCCATGACTGGGTTCTGGTTTCTTTCCCTTGCCTGTTGTGACTTCCTATGGACACAGCCAAAAACCATCACATAGTCCTGTTGTATGGCATCCCCTCCATCTTGAAATGTCCTCTCCCTCAGTTCCTATATGTTATCACACATGCCTGCCTTGGCTTCTCCCTCTAGTTGTTCCTTCTCTGTCTTCTGTGGGCTTCTTATTGTCTGCTCACTCCTTCTTCAGTGTCCTCACATGGGCTTCCTTCCCTTCTCAGCTGATGCCATCACCTGGGGAATCACAGTTACTCAGCAGCACTGGGGCC</dnaseq>|
 
sequence = <dnaseq>CTCCACACTGGTTGGTGACCTGGCTCTGCAGTTCACTCTGCTGCTTCAGATGAAAATTTTCAGGTCTGTCTGCCACTGTAGTGAAGGACTGCTTTGGGTAGTGTCTGTGGAGAAACTTTTTAAAGGACATAGTTAAAATATTGTGCTACAAACCAATTCTTGAACACCAATCGTTTTGTCCTACCTCTCTGTGACAGTGAAAGATGGCTGTGCTCTTGGCAAAGGTCATCTCTCTGTCATGATTCTGGATCTCCTTTTCTTCTCCTGATTATCTGTCACTCAGTTATCCCCACTGTCTTCCACAACTTTAACCTCAGCTTCTCTATTCTAGGAGACTCTTCTCGCAGGCTCAAGGCTCTCCTACCCTCCATCATTCCTCCCTCTACCCCACACAGCCAGCATGTGTCCAGCTAGTCTATCCTTCAGCCAAACTTCCTTAGAAAGAGGCCTTACCTCACTGTCCCTACCCATCTCCTCTCTGACTCACTTCTTAACTCCATGACTGGGTTCTGGTTTCTTTCCCTTGCCTGTTGTGACTTCCTATGGACACAGCCAAAAACCATCACATAGTCCTGTTGTATGGCATCCCCTCCATCTTGAAATGTCCTCTCCCTCAGTTCCTATATGTTATCACACATGCCTGCCTTGGCTTCTCCCTCTAGTTGTTCCTTCTCTGTCTTCTGTGGGCTTCTTATTGTCTGCTCACTCCTTCTTCAGTGTCCTCACATGGGCTTCCTTCCCTTCTCAGCTGATGCCATCACCTGGGGAATCACAGTTACTCAGCAGCACTGGGGCC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG028596]]
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[[Category:Intergenic]][[Category:NONHSAG028596]][[Category:Transcripts]]

Latest revision as of 23:27, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT072515

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

796 nt

Genomic location

chr2+:96479687..96480574

Exon number

2

Exons

96479687..96479710,96479803..96480574

Genome context

Sequence
000001 CTCCACACTG GTTGGTGACC TGGCTCTGCA GTTCACTCTG CTGCTTCAGA TGAAAATTTT CAGGTCTGTC TGCCACTGTA 000080
000081 GTGAAGGACT GCTTTGGGTA GTGTCTGTGG AGAAACTTTT TAAAGGACAT AGTTAAAATA TTGTGCTACA AACCAATTCT 000160
000161 TGAACACCAA TCGTTTTGTC CTACCTCTCT GTGACAGTGA AAGATGGCTG TGCTCTTGGC AAAGGTCATC TCTCTGTCAT 000240
000241 GATTCTGGAT CTCCTTTTCT TCTCCTGATT ATCTGTCACT CAGTTATCCC CACTGTCTTC CACAACTTTA ACCTCAGCTT 000320
000321 CTCTATTCTA GGAGACTCTT CTCGCAGGCT CAAGGCTCTC CTACCCTCCA TCATTCCTCC CTCTACCCCA CACAGCCAGC 000400
000401 ATGTGTCCAG CTAGTCTATC CTTCAGCCAA ACTTCCTTAG AAAGAGGCCT TACCTCACTG TCCCTACCCA TCTCCTCTCT 000480
000481 GACTCACTTC TTAACTCCAT GACTGGGTTC TGGTTTCTTT CCCTTGCCTG TTGTGACTTC CTATGGACAC AGCCAAAAAC 000560
000561 CATCACATAG TCCTGTTGTA TGGCATCCCC TCCATCTTGA AATGTCCTCT CCCTCAGTTC CTATATGTTA TCACACATGC 000640
000641 CTGCCTTGGC TTCTCCCTCT AGTTGTTCCT TCTCTGTCTT CTGTGGGCTT CTTATTGTCT GCTCACTCCT TCTTCAGTGT 000720
000721 CCTCACATGG GCTTCCTTCC CTTCTCAGCT GATGCCATCA CCTGGGGAAT CACAGTTACT CAGCAGCACT GGGGCC
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Predicted Small Protein

Name NONHSAT072515_smProtein_542:661
Length 40
Molecular weight 4368.2348
Aromaticity 0.102564102564
Instability index 46.6743589744
Isoelectric point 7.85516357422
Runs 5
Runs residual 0.0405354449472
Runs probability 0.096025437202
Amino acid sequence MDTAKNHHIVLLYGIPSILKCPLPQFLYVITHACLGFSL
Secondary structure LLLLLLLEEEEELLLLLLLLLLLLHHHHHHHHHHHLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL
PiMo iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooo