Difference between revisions of "NONHSAT117416"
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sequence = <dnaseq>AGGCTGGGGGAGAAGTTAAAGCCAGAGGAGGGGCAGGAATGTCTGAGGTGGCAACACTTCTCTTCAGCCAGACAGCACTGGCCAGTTTGGAGTCTGTCCATCCTGCAGGCCACAAGCTCTGGatgaggaacttgaggcaagtcaccagcccctgatcatttcgcctaaaagagcaaggactagagttcctgacctccaggccagtccctgatccctGACCTAATGTTATCGCGGAATGATGGTAAGTAAAGTGTCTCTTGCATCTGCATAGAGAGGGTCCTGGGAGCTTAGGAAGTGATGGGGAACAGTGATGTATGCAGCTCATGACTAGGTGGACAGGCCTCTGGGGACAGCTGGTACAGGAGGGAAAGGGACCTCACGGGAGGCCCAGAAACCTGGTAAGAGGTGAGGTATTAAGGTCTGGGATGGAGAAGCTCTGAGGGTATATTTTTCTGCCTCTAAAACTGTTGGAGAGGGAATCTGAGAAAGCTGCAACCAACCAGGAGGCTGGGGTACGCTGGAGAAGGAATGGGCTTCCTAACCTTGAGCCCTCTTCCCTGAAGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAGTGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGTGAGCGCTGCACTCCCTCCCTCCCCCTGCAGCAGTGCCCCCTGTGCCCCCACCCCCACACGCTTTCCCACTGCTTTCCCAGAACACTGCCTGGCCCTGGAGCCACTGGGAAGCCAACAGGGGAGTCCACGCCTGCTGGTGGGGGGAGCCCGGGAGGGCCCGGGAGAAGCACAAAGGGTGGGCTGTGTTGAGCTTCTTCTTTTCTTCCAGTAAAGAGGCTGGAGAGGAGCTGGGTGAGTCTGGGGACAGGGAAGGGGGAGGGCAAGAGAGATCCTGAGTGGGTGAGTGGGGAGAAGCATGGCTGAGCGCTGAGAGGAGGGTTGGGGACGGGAGACAAGGAGAGAGAAAGTAGGAGCATGAGAGAGGCAGAGAAAATCGAGGCAAAagagaaagagaaaatgagacagaaaccaagagaaaaagtgagacagaggataggagagacagggagaaaatgagagtgagagagacacaaagagaagagcaatgaaagagagagagagagagagGCTCCAGAAccaggcacagtggctcacgtctgtcattccagctatcgcaaggctgaggcaggaagatagcttgagctcaggggttgaagacaatcctggacaacatagtgggactctgtctccaaagaaaaaagagagagagagagagagagagagagagggagagagagagagagagagggagagaAGTAAGAAAGGCTGGAGGTGGGAGCAGAACTCACAGGGAAGGATCTGACGGCATCGCCTCCCATCAGCACCTTCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGAGCACCCCAGACACCTTCCTCAACCCAGGCGGGTGGACAGGGTCCCCCTGTGGTCCAGCCAGTAAAAACCATGGTCCCCCCACTTCTGTGTCTCAGTCCTCTCAGTCCATCTCGAGCCTCCGTTCAAATTGATCATCATCAAAACTTATGTGGCTTTTTGACCTTTGAATAGGGaattttttaaattttttaaaaattaaaataaaaaaaaCACATGGCTCACCCTTCCACCCA</dnaseq>| | sequence = <dnaseq>AGGCTGGGGGAGAAGTTAAAGCCAGAGGAGGGGCAGGAATGTCTGAGGTGGCAACACTTCTCTTCAGCCAGACAGCACTGGCCAGTTTGGAGTCTGTCCATCCTGCAGGCCACAAGCTCTGGatgaggaacttgaggcaagtcaccagcccctgatcatttcgcctaaaagagcaaggactagagttcctgacctccaggccagtccctgatccctGACCTAATGTTATCGCGGAATGATGGTAAGTAAAGTGTCTCTTGCATCTGCATAGAGAGGGTCCTGGGAGCTTAGGAAGTGATGGGGAACAGTGATGTATGCAGCTCATGACTAGGTGGACAGGCCTCTGGGGACAGCTGGTACAGGAGGGAAAGGGACCTCACGGGAGGCCCAGAAACCTGGTAAGAGGTGAGGTATTAAGGTCTGGGATGGAGAAGCTCTGAGGGTATATTTTTCTGCCTCTAAAACTGTTGGAGAGGGAATCTGAGAAAGCTGCAACCAACCAGGAGGCTGGGGTACGCTGGAGAAGGAATGGGCTTCCTAACCTTGAGCCCTCTTCCCTGAAGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAGTGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGTGAGCGCTGCACTCCCTCCCTCCCCCTGCAGCAGTGCCCCCTGTGCCCCCACCCCCACACGCTTTCCCACTGCTTTCCCAGAACACTGCCTGGCCCTGGAGCCACTGGGAAGCCAACAGGGGAGTCCACGCCTGCTGGTGGGGGGAGCCCGGGAGGGCCCGGGAGAAGCACAAAGGGTGGGCTGTGTTGAGCTTCTTCTTTTCTTCCAGTAAAGAGGCTGGAGAGGAGCTGGGTGAGTCTGGGGACAGGGAAGGGGGAGGGCAAGAGAGATCCTGAGTGGGTGAGTGGGGAGAAGCATGGCTGAGCGCTGAGAGGAGGGTTGGGGACGGGAGACAAGGAGAGAGAAAGTAGGAGCATGAGAGAGGCAGAGAAAATCGAGGCAAAagagaaagagaaaatgagacagaaaccaagagaaaaagtgagacagaggataggagagacagggagaaaatgagagtgagagagacacaaagagaagagcaatgaaagagagagagagagagagGCTCCAGAAccaggcacagtggctcacgtctgtcattccagctatcgcaaggctgaggcaggaagatagcttgagctcaggggttgaagacaatcctggacaacatagtgggactctgtctccaaagaaaaaagagagagagagagagagagagagagagggagagagagagagagagagggagagaAGTAAGAAAGGCTGGAGGTGGGAGCAGAACTCACAGGGAAGGATCTGACGGCATCGCCTCCCATCAGCACCTTCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGAGCACCCCAGACACCTTCCTCAACCCAGGCGGGTGGACAGGGTCCCCCTGTGGTCCAGCCAGTAAAAACCATGGTCCCCCCACTTCTGTGTCTCAGTCCTCTCAGTCCATCTCGAGCCTCCGTTCAAATTGATCATCATCAAAACTTATGTGGCTTTTTGACCTTTGAATAGGGaattttttaaattttttaaaaattaaaataaaaaaaaCACATGGCTCACCCTTCCACCCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG046117]] | + | [[Category:Intergenic]][[Category:NONHSAG046117]][[Category:Transcripts]] |
Revision as of 11:17, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117416 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1832 nt |
| Genomic location |
chr6_mann_hap4+:2896855..2899570 |
| Exon number |
2 |
| Exons |
2896855..2896976,2897861..2899570 |
| Genome context |
|
| Sequence |
000001 AGGCTGGGGG AGAAGTTAAA GCCAGAGGAG GGGCAGGAAT GTCTGAGGTG GCAACACTTC TCTTCAGCCA GACAGCACTG 000080
000081 GCCAGTTTGG AGTCTGTCCA TCCTGCAGGC CACAAGCTCT GGatgaggaa cttgaggcaa gtcaccagcc cctgatcatt 000160 000161 tcgcctaaaa gagcaaggac tagagttcct gacctccagg ccagtccctg atccctGACC TAATGTTATC GCGGAATGAT 000240 000241 GGTAAGTAAA GTGTCTCTTG CATCTGCATA GAGAGGGTCC TGGGAGCTTA GGAAGTGATG GGGAACAGTG ATGTATGCAG 000320 000321 CTCATGACTA GGTGGACAGG CCTCTGGGGA CAGCTGGTAC AGGAGGGAAA GGGACCTCAC GGGAGGCCCA GAAACCTGGT 000400 000401 AAGAGGTGAG GTATTAAGGT CTGGGATGGA GAAGCTCTGA GGGTATATTT TTCTGCCTCT AAAACTGTTG GAGAGGGAAT 000480 000481 CTGAGAAAGC TGCAACCAAC CAGGAGGCTG GGGTACGCTG GAGAAGGAAT GGGCTTCCTA ACCTTGAGCC CTCTTCCCTG 000560 000561 AAGATATATG TATCTACGGG GGCCTGGGGC TGGGCGGGCT CCTGCTTCTG GCAGTGGTCC TTCTGTCCGC CTGCCTGTGT 000640 000641 TGGCTGCATC GAAGAGGTGA GCGCTGCACT CCCTCCCTCC CCCTGCAGCA GTGCCCCCTG TGCCCCCACC CCCACACGCT 000720 000721 TTCCCACTGC TTTCCCAGAA CACTGCCTGG CCCTGGAGCC ACTGGGAAGC CAACAGGGGA GTCCACGCCT GCTGGTGGGG 000800 000801 GGAGCCCGGG AGGGCCCGGG AGAAGCACAA AGGGTGGGCT GTGTTGAGCT TCTTCTTTTC TTCCAGTAAA GAGGCTGGAG 000880 000881 AGGAGCTGGG TGAGTCTGGG GACAGGGAAG GGGGAGGGCA AGAGAGATCC TGAGTGGGTG AGTGGGGAGA AGCATGGCTG 000960 000961 AGCGCTGAGA GGAGGGTTGG GGACGGGAGA CAAGGAGAGA GAAAGTAGGA GCATGAGAGA GGCAGAGAAA ATCGAGGCAA 001040 001041 Aagagaaaga gaaaatgaga cagaaaccaa gagaaaaagt gagacagagg ataggagaga cagggagaaa atgagagtga 001120 001121 gagagacaca aagagaagag caatgaaaga gagagagaga gagagGCTCC AGAAccaggc acagtggctc acgtctgtca 001200 001201 ttccagctat cgcaaggctg aggcaggaag atagcttgag ctcaggggtt gaagacaatc ctggacaaca tagtgggact 001280 001281 ctgtctccaa agaaaaaaga gagagagaga gagagagaga gagagggaga gagagagaga gagagggaga gaAGTAAGAA 001360 001361 AGGCTGGAGG TGGGAGCAGA ACTCACAGGG AAGGATCTGA CGGCATCGCC TCCCATCAGC ACCTTCTGTC CTGGTCCCAG 001440 001441 GCCCAGGGCT CCTCAGAGCA GGAACTCCAC TATGCATCTC TGCAGAGGCT GCCAGTGCCC AGCAGTGAGG GACCTGACCT 001520 001521 CAGGGGCAGA GACAAGAGAG GCACCAAGGA GGATCCAAGA GCTGACTATG CCTGCATTGC TGAGAACAAA CCCACCTGAG 001600 001601 CACCCCAGAC ACCTTCCTCA ACCCAGGCGG GTGGACAGGG TCCCCCTGTG GTCCAGCCAG TAAAAACCAT GGTCCCCCCA 001680 001681 CTTCTGTGTC TCAGTCCTCT CAGTCCATCT CGAGCCTCCG TTCAAATTGA TCATCATCAA AACTTATGTG GCTTTTTGAC 001760 001761 CTTTGAATAG GGaatttttt aaatttttta aaaattaaaa taaaaaaaaC ACATGGCTCA CCCTTCCACC CA |
Predicted Small Protein
| Name | NONHSAT117416_smProtein_1142:1399 |
| Length | 86 |
| Molecular weight | 10212.1327 |
| Aromaticity | 0.0352941176471 |
| Instability index | 51.9082352941 |
| Isoelectric point | 9.96099853516 |
| Runs | 9 |
| Runs residual | 0.0306595365419 |
| Runs probability | 0.0358593888005 |
| Amino acid sequence | MKERERERLQNQAQWLTSVIPAIARLRQEDSLSSGVEDNPGQHSGTLSPKKKERERERER EGERERERERSKKGWRWEQNSQGRI |
| Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH LLHHHHHHHHHLLLLEEEELLLLLL |
| PRMN | - |
| PiMo | - |